Wall clock time and date at job start Mon Mar 30 2020 02:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99652 * 2 1 4 4 C 1.50705 * 109.47137 * 293.95641 * 3 2 1 5 5 H 1.08000 * 120.00078 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99779 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00452 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99658 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47165 * 59.99806 * 8 6 4 10 10 H 1.48503 * 109.46942 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47017 * 299.99641 * 8 6 4 12 12 C 1.46894 * 111.00130 * 123.95204 * 2 1 3 13 13 C 1.52998 * 109.47317 * 66.04816 * 12 2 1 14 14 C 1.53001 * 109.47523 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47162 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.46972 * 180.02562 * 15 14 13 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 1.08997 * 109.47231 * 296.04459 * 1 2 3 25 25 H 1.09001 * 109.47171 * 56.05059 * 1 2 3 26 26 H 1.09004 * 109.46748 * 176.04759 * 1 2 3 27 27 H 1.08998 * 109.47359 * 53.95192 * 3 2 1 28 28 H 1.09001 * 109.47299 * 173.95627 * 3 2 1 29 29 H 0.96999 * 120.00434 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47265 * 306.04837 * 12 2 1 31 31 H 1.09005 * 109.46913 * 186.05060 * 12 2 1 32 32 H 1.09005 * 109.46936 * 59.99819 * 13 12 2 33 33 H 1.08993 * 109.47017 * 300.00143 * 13 12 2 34 34 H 1.09001 * 109.46447 * 60.00134 * 14 13 12 35 35 H 1.09005 * 109.47034 * 300.00445 * 14 13 12 36 36 H 1.09005 * 109.47112 * 60.00208 * 15 14 13 37 37 H 1.08993 * 109.47202 * 300.00311 * 15 14 13 38 38 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 39 39 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5113 -2.0488 6 6 2.0275 3.3492 -1.5289 7 7 2.7126 4.0017 -0.6154 8 14 1.5835 4.1865 -3.1387 9 1 0.1064 4.2236 -3.2864 10 1 2.1155 5.5730 -3.1386 11 1 2.1754 3.4288 -4.2704 12 6 1.9955 -0.7659 1.1376 13 6 1.6316 -2.2425 0.9704 14 6 2.1805 -3.0404 2.1549 15 6 1.8160 -4.5169 1.9880 16 8 2.3281 -5.2620 3.0946 17 6 2.0416 -6.6607 3.0359 18 6 2.6257 -7.3443 4.2454 19 6 1.8724 -7.4737 5.3972 20 6 2.4079 -8.1012 6.5064 21 6 3.6965 -8.5998 6.4636 22 6 4.4517 -8.4657 5.3136 23 6 3.9145 -7.8423 4.2028 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 1.5610 1.9274 0.8309 28 1 3.0797 1.3445 0.1082 29 1 2.9871 4.9178 -0.7774 30 1 1.5611 -0.3872 2.0628 31 1 3.0798 -0.6609 1.1756 32 1 2.0660 -2.6213 0.0451 33 1 0.5474 -2.3475 0.9323 34 1 1.7464 -2.6618 3.0803 35 1 3.2648 -2.9354 2.1925 36 1 2.2497 -4.8959 1.0625 37 1 0.7317 -4.6215 1.9506 38 1 2.4807 -7.0841 2.1325 39 1 0.9621 -6.8102 3.0197 40 1 0.8654 -7.0846 5.4305 41 1 1.8196 -8.2019 7.4064 42 1 4.1147 -9.0904 7.3302 43 1 5.4600 -8.8513 5.2816 44 1 4.5028 -7.7419 3.3027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209256552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:02 Heat of formation + Delta-G solvation = -33.345104 kcal Electronic energy + Delta-G solvation = -19983.137854 eV Core-core repulsion = 16899.906655 eV Total energy + Delta-G solvation = -3083.231199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.66140 -38.02164 -36.88944 -33.94338 -32.48613 -31.85838 -31.20758 -28.38310 -26.95231 -26.14452 -24.84857 -22.88996 -22.56379 -21.66884 -20.83534 -19.94773 -17.21568 -16.63158 -16.47346 -16.25146 -15.70611 -15.40773 -14.83785 -14.62354 -14.43169 -14.00696 -13.73796 -13.49258 -13.36918 -13.02404 -12.66430 -12.46084 -11.92299 -11.71253 -11.67442 -11.43742 -11.25718 -11.14614 -11.05731 -10.85375 -10.82258 -10.56155 -10.42171 -10.19716 -9.76260 -9.74186 -9.22265 -9.18730 -9.12762 -8.41068 -7.19805 -6.00014 -4.01432 0.95820 1.09986 3.26342 3.35035 3.38784 3.41886 3.82196 4.44105 4.50417 4.52979 4.69841 4.80660 4.92603 5.00853 5.03247 5.05664 5.16087 5.24929 5.34048 5.35053 5.35663 5.48521 5.65586 5.71676 5.73027 5.82614 6.00678 6.08696 6.13129 6.17276 6.19210 6.25793 6.29196 6.35999 6.56953 6.60441 6.67072 6.79108 7.04574 7.33587 7.38560 7.82913 8.12750 8.24329 8.59267 9.06028 9.62478 11.10879 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.049672 B = 0.002012 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.564426 B =13910.086684 C =14043.213326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.543 5.543 3 C 0.192 3.808 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.057 3.943 13 C -0.111 4.111 14 C -0.116 4.116 15 C 0.063 3.937 16 O -0.383 6.383 17 C 0.102 3.898 18 C -0.089 4.089 19 C -0.099 4.099 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.099 4.099 24 H 0.009 0.991 25 H 0.073 0.927 26 H 0.046 0.954 27 H -0.010 1.010 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -25.705 11.748 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.267 5.267 3 C 0.067 3.933 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.072 4.072 13 C -0.149 4.149 14 C -0.154 4.154 15 C -0.013 4.013 16 O -0.303 6.303 17 C 0.025 3.975 18 C -0.089 4.089 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.117 4.117 24 H 0.028 0.972 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.008 0.992 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.459 -25.651 11.491 28.111 hybrid contribution -0.576 0.874 -0.230 1.072 sum -1.035 -24.777 11.260 27.235 Atomic orbital electron populations 1.22243 0.89159 0.99431 1.00416 1.62103 1.06840 1.17804 1.39990 1.19729 0.95370 0.81662 0.96548 1.21143 1.34820 0.96928 1.01730 0.91914 1.25005 0.95344 0.97369 0.97017 1.69949 1.38361 1.11474 1.34109 0.86546 0.78652 0.78312 0.83797 1.20317 1.21371 1.20161 1.22015 1.00059 0.92607 0.92542 1.21512 1.00726 0.95250 0.97428 1.21502 1.02245 0.92006 0.99664 1.22590 0.97601 0.92495 0.88642 1.87967 1.78602 1.17819 1.45866 1.21282 0.98780 0.82174 0.95231 1.19657 0.94878 0.99001 0.95330 1.21094 1.00059 0.98106 0.92480 1.21159 0.95866 0.98815 0.98395 1.21206 0.94568 0.99633 0.98081 1.21165 0.99955 0.99744 0.93340 1.21101 0.94468 0.97310 0.98817 0.97230 0.90862 0.93571 0.99210 0.95264 0.92889 0.96074 0.91439 0.91191 0.92123 0.91422 0.91092 0.93171 0.93382 0.92471 0.92527 0.85916 0.85919 0.86043 0.85893 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.07 0.55 1.27 16 2 N -0.54 -12.08 4.75 -244.36 -1.16 -13.24 16 3 C 0.19 5.15 4.72 -4.97 -0.02 5.13 16 4 C -0.51 -14.55 8.46 -34.44 -0.29 -14.84 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.06 1.04 4.96 -3.83 -0.02 1.02 16 13 C -0.11 -1.61 5.14 -26.73 -0.14 -1.74 16 14 C -0.12 -1.47 5.58 -26.73 -0.15 -1.62 16 15 C 0.06 0.70 5.94 37.16 0.22 0.92 16 16 O -0.38 -4.66 10.33 -35.23 -0.36 -5.02 16 17 C 0.10 0.96 6.06 36.01 0.22 1.18 16 18 C -0.09 -0.86 5.51 -104.62 -0.58 -1.44 16 19 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 20 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.10 -0.89 9.70 -39.58 -0.38 -1.28 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 26 H 0.05 0.77 6.47 -51.93 -0.34 0.44 16 27 H -0.01 -0.28 8.12 -51.93 -0.42 -0.71 16 28 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 39 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -31.65 362.37 -10.31 -41.96 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.69 Total: -4.34 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.27 Total: -15.26 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.43 Total: -39.65 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.36 Total: -5.02 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.65 -10.31 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209256552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.611 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds