Wall clock time and date at job start Mon Mar 30 2020 02:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99652 * 2 1 4 4 C 1.50705 * 109.47137 * 293.95641 * 3 2 1 5 5 H 1.08000 * 120.00078 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99779 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00452 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99658 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47165 * 59.99806 * 8 6 4 10 10 H 1.48503 * 109.46942 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47017 * 299.99641 * 8 6 4 12 12 C 1.46894 * 111.00130 * 123.95204 * 2 1 3 13 13 C 1.52998 * 109.47317 * 66.04816 * 12 2 1 14 14 C 1.53001 * 109.47523 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47162 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.46972 * 180.02562 * 15 14 13 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 1.08997 * 109.47231 * 296.04459 * 1 2 3 25 25 H 1.09001 * 109.47171 * 56.05059 * 1 2 3 26 26 H 1.09004 * 109.46748 * 176.04759 * 1 2 3 27 27 H 1.08998 * 109.47359 * 53.95192 * 3 2 1 28 28 H 1.09001 * 109.47299 * 173.95627 * 3 2 1 29 29 H 0.96999 * 120.00434 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47265 * 306.04837 * 12 2 1 31 31 H 1.09005 * 109.46913 * 186.05060 * 12 2 1 32 32 H 1.09005 * 109.46936 * 59.99819 * 13 12 2 33 33 H 1.08993 * 109.47017 * 300.00143 * 13 12 2 34 34 H 1.09001 * 109.46447 * 60.00134 * 14 13 12 35 35 H 1.09005 * 109.47034 * 300.00445 * 14 13 12 36 36 H 1.09005 * 109.47112 * 60.00208 * 15 14 13 37 37 H 1.08993 * 109.47202 * 300.00311 * 15 14 13 38 38 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 39 39 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5113 -2.0488 6 6 2.0275 3.3492 -1.5289 7 7 2.7126 4.0017 -0.6154 8 14 1.5835 4.1865 -3.1387 9 1 0.1064 4.2236 -3.2864 10 1 2.1155 5.5730 -3.1386 11 1 2.1754 3.4288 -4.2704 12 6 1.9955 -0.7659 1.1376 13 6 1.6316 -2.2425 0.9704 14 6 2.1805 -3.0404 2.1549 15 6 1.8160 -4.5169 1.9880 16 8 2.3281 -5.2620 3.0946 17 6 2.0416 -6.6607 3.0359 18 6 2.6257 -7.3443 4.2454 19 6 1.8724 -7.4737 5.3972 20 6 2.4079 -8.1012 6.5064 21 6 3.6965 -8.5998 6.4636 22 6 4.4517 -8.4657 5.3136 23 6 3.9145 -7.8423 4.2028 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 1.5610 1.9274 0.8309 28 1 3.0797 1.3445 0.1082 29 1 2.9871 4.9178 -0.7774 30 1 1.5611 -0.3872 2.0628 31 1 3.0798 -0.6609 1.1756 32 1 2.0660 -2.6213 0.0451 33 1 0.5474 -2.3475 0.9323 34 1 1.7464 -2.6618 3.0803 35 1 3.2648 -2.9354 2.1925 36 1 2.2497 -4.8959 1.0625 37 1 0.7317 -4.6215 1.9506 38 1 2.4807 -7.0841 2.1325 39 1 0.9621 -6.8102 3.0197 40 1 0.8654 -7.0846 5.4305 41 1 1.8196 -8.2019 7.4064 42 1 4.1147 -9.0904 7.3302 43 1 5.4600 -8.8513 5.2816 44 1 4.5028 -7.7419 3.3027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209256552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:02 Heat of formation + Delta-G solvation = -51.592700 kcal Electronic energy + Delta-G solvation = -19983.929130 eV Core-core repulsion = 16899.906655 eV Total energy + Delta-G solvation = -3084.022474 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29508 -38.99953 -38.38137 -35.37916 -34.28521 -32.72130 -31.79894 -29.89818 -28.68439 -27.13713 -26.32962 -24.08077 -23.48752 -22.46737 -22.03300 -21.53328 -18.50871 -17.84243 -17.39534 -17.33398 -16.77683 -16.43675 -16.35831 -15.93580 -15.71117 -15.20656 -14.87015 -14.82238 -14.27938 -13.94901 -13.73540 -13.62320 -13.46633 -13.20084 -12.98929 -12.73952 -12.68047 -12.39723 -12.32839 -12.28178 -12.03249 -11.91580 -11.79817 -11.77238 -11.39874 -11.20169 -10.61889 -10.57025 -9.83317 -9.76862 -9.03094 -8.20704 -6.31611 0.33151 0.48927 1.41220 1.45101 1.53033 2.40160 2.55699 3.06715 3.11452 3.42774 3.85819 3.90856 3.97435 4.10225 4.14760 4.27850 4.28930 4.35376 4.41073 4.41850 4.51267 4.54624 4.64746 4.70268 4.73180 4.76089 4.82133 4.89677 4.98002 5.07147 5.09042 5.14704 5.17871 5.28924 5.35136 5.41250 5.54076 5.60161 5.64801 5.66161 6.04454 6.08803 6.25153 6.33006 6.63857 6.84631 7.38174 8.90378 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.049672 B = 0.002012 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.564426 B =13910.086684 C =14043.213326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.551 5.551 3 C 0.205 3.795 4 C -0.526 4.526 5 H 0.065 0.935 6 C -0.002 4.002 7 N -0.936 5.936 8 Si 0.974 3.026 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.054 3.946 13 C -0.096 4.096 14 C -0.110 4.110 15 C 0.066 3.934 16 O -0.405 6.405 17 C 0.100 3.900 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.115 4.115 24 H 0.007 0.993 25 H 0.056 0.944 26 H 0.085 0.915 27 H -0.040 1.040 28 H 0.001 0.999 29 H 0.265 0.735 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.130 0.870 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 -27.217 11.276 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.275 5.275 3 C 0.079 3.921 4 C -0.564 4.564 5 H 0.084 0.916 6 C -0.200 4.200 7 N -0.576 5.576 8 Si 0.798 3.202 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.192 1.192 12 C -0.074 4.074 13 C -0.134 4.134 14 C -0.148 4.148 15 C -0.010 4.010 16 O -0.326 6.326 17 C 0.024 3.976 18 C -0.109 4.109 19 C -0.133 4.133 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.133 4.133 24 H 0.026 0.974 25 H 0.075 0.925 26 H 0.103 0.897 27 H -0.023 1.023 28 H 0.019 0.981 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.148 0.852 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.291 -27.195 11.025 29.373 hybrid contribution -0.292 1.283 0.012 1.316 sum -1.582 -25.912 11.038 28.209 Atomic orbital electron populations 1.22268 0.87517 1.01595 0.99581 1.62046 1.08387 1.15100 1.41989 1.19400 0.93570 0.84083 0.95054 1.21467 1.35033 0.97585 1.02344 0.91646 1.25992 0.94975 0.98090 1.00950 1.70087 1.39291 1.11914 1.36348 0.85372 0.78868 0.77074 0.78907 1.19099 1.20851 1.19210 1.22120 0.99344 0.94761 0.91160 1.21350 1.01529 0.92205 0.98275 1.21380 1.01624 0.93203 0.98581 1.22527 0.98464 0.91160 0.88845 1.87923 1.79044 1.19294 1.46313 1.21416 0.99654 0.80818 0.95729 1.19841 0.95480 0.99770 0.95839 1.21318 1.00582 0.98585 0.92766 1.21474 0.96345 0.98324 0.98826 1.21555 0.94482 0.99238 0.98735 1.21472 1.00935 0.99404 0.93180 1.21318 0.94576 0.97794 0.99620 0.97403 0.92490 0.89662 1.02261 0.98062 0.92658 0.96255 0.92522 0.91022 0.90835 0.91778 0.91858 0.92189 0.91996 0.91459 0.91333 0.85204 0.83995 0.83792 0.84049 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.14 127.69 1.17 2.67 16 2 N -0.55 -24.59 4.75 -927.03 -4.41 -29.00 16 3 C 0.21 11.39 4.72 85.56 0.40 11.80 16 4 C -0.53 -30.55 8.46 25.60 0.22 -30.34 16 5 H 0.07 3.68 7.12 -2.91 -0.02 3.66 16 6 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 7 N -0.94 -57.54 13.29 21.45 0.28 -57.26 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 C 0.05 2.00 4.96 86.30 0.43 2.43 16 13 C -0.10 -2.61 5.14 30.59 0.16 -2.45 16 14 C -0.11 -2.64 5.58 30.59 0.17 -2.47 16 15 C 0.07 1.35 5.94 71.98 0.43 1.77 16 16 O -0.41 -9.40 10.33 -148.98 -1.54 -10.94 16 17 C 0.10 1.77 6.06 71.24 0.43 2.20 16 18 C -0.11 -2.05 5.51 -19.86 -0.11 -2.16 16 19 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 20 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 21 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 22 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 23 C -0.12 -2.00 9.70 22.27 0.22 -1.78 16 24 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.06 2.39 6.76 -2.39 -0.02 2.37 16 26 H 0.08 2.63 6.47 -2.38 -0.02 2.62 16 27 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 28 H 0.00 0.08 7.93 -2.39 -0.02 0.06 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.02 0.71 8.12 -2.38 -0.02 0.69 16 31 H 0.06 2.17 7.93 -2.38 -0.02 2.15 16 32 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.07 1.83 6.55 -2.39 -0.02 1.81 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.02 8.08 -2.38 -0.02 1.00 16 39 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 40 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 43 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -68.55 362.37 2.16 -66.40 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.93 Total: 8.58 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 4.86 Total: -24.58 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -4.12 Total: -86.26 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.54 Total: -10.94 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.55 2.16 -66.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209256552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.803 kcal (2) G-P(sol) polarization free energy of solvation -68.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds