Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46907 * 109.46887 * 2 1 4 4 C 1.46897 * 110.99930 * 72.41342 * 3 2 1 5 5 C 1.52997 * 109.47298 * 70.22275 * 4 3 2 6 6 C 1.46903 * 110.99809 * 196.36016 * 3 2 1 7 7 C 1.52999 * 109.47011 * 162.75859 * 6 3 2 8 8 O 1.42902 * 109.47115 * 66.41723 * 7 6 3 9 9 C 1.42898 * 114.00151 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.46735 * 30.00633 * 9 8 7 11 11 C 1.50698 * 109.47367 * 270.00553 * 9 8 7 12 12 H 1.07998 * 119.99903 * 329.79617 * 11 9 8 13 13 C 1.37877 * 120.00207 * 149.80203 * 11 9 8 14 14 N 1.31518 * 119.99814 * 1.78278 * 13 11 9 15 15 Si 1.86795 * 120.00155 * 181.78264 * 13 11 9 16 16 H 1.48502 * 109.47304 * 269.99688 * 15 13 11 17 17 H 1.48495 * 109.47167 * 29.99963 * 15 13 11 18 18 H 1.48501 * 109.47053 * 149.99846 * 15 13 11 19 19 C 1.50693 * 109.47099 * 149.99897 * 9 8 7 20 20 C 1.38242 * 119.99874 * 39.04245 * 19 9 8 21 21 C 1.38237 * 119.99939 * 179.78701 * 20 19 9 22 22 C 1.38231 * 120.00196 * 0.44105 * 21 20 19 23 23 C 1.38243 * 119.99828 * 359.80735 * 22 21 20 24 24 C 1.38231 * 120.00045 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47600 * 64.29152 * 1 2 3 26 26 H 1.09005 * 109.47290 * 184.29419 * 1 2 3 27 27 H 1.09004 * 109.47018 * 304.29137 * 1 2 3 28 28 H 1.08999 * 109.47352 * 240.00555 * 2 1 3 29 29 H 1.08996 * 109.47211 * 119.99755 * 2 1 3 30 30 H 1.09000 * 109.47168 * 190.22531 * 4 3 2 31 31 H 1.09001 * 109.46951 * 310.22213 * 4 3 2 32 32 H 1.09000 * 109.47443 * 305.68494 * 5 4 3 33 33 H 1.09005 * 109.47440 * 65.68757 * 5 4 3 34 34 H 1.09003 * 109.47284 * 185.68400 * 5 4 3 35 35 H 1.09008 * 109.46937 * 42.76036 * 6 3 2 36 36 H 1.09000 * 109.47742 * 282.76536 * 6 3 2 37 37 H 1.09007 * 109.47177 * 306.41982 * 7 6 3 38 38 H 1.08998 * 109.47202 * 186.42321 * 7 6 3 39 39 H 0.97003 * 119.99914 * 354.24426 * 14 13 11 40 40 H 1.08002 * 119.99654 * 359.97438 * 20 19 9 41 41 H 1.07996 * 119.99580 * 180.27293 * 21 20 19 42 42 H 1.07999 * 120.00376 * 179.83872 * 22 21 20 43 43 H 1.07996 * 119.99749 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00171 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8044 2.0195 1.3073 5 6 2.7479 1.3965 2.3381 6 6 3.4357 1.4428 -0.3863 7 6 3.7959 2.8735 -0.7916 8 8 3.7101 3.7280 0.3506 9 6 4.0295 5.0943 0.0796 10 1 3.7639 5.3320 -0.9506 11 6 5.5066 5.3145 0.2812 12 1 6.0467 4.7231 1.0057 13 6 6.1684 6.2710 -0.4591 14 7 5.5040 7.0153 -1.3161 15 14 8.0086 6.5098 -0.2450 16 1 8.2567 7.5173 0.8174 17 1 8.6336 5.2193 0.1409 18 1 8.5983 6.9828 -1.5232 19 6 3.2561 5.9861 1.0162 20 6 3.0773 5.6136 2.3354 21 6 2.3716 6.4338 3.1957 22 6 1.8369 7.6222 2.7347 23 6 2.0112 7.9923 1.4142 24 6 2.7207 7.1743 0.5550 25 1 -0.3634 0.4458 -0.9259 26 1 -0.3634 -1.0248 0.0770 27 1 -0.3633 0.5790 0.8491 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0051 3.0881 1.2301 31 1 0.7716 1.8655 1.6202 32 1 2.6174 0.3144 2.3428 33 1 3.7790 1.6370 2.0790 34 1 2.5195 1.7943 3.3269 35 1 3.6105 0.7719 -1.2275 36 1 4.0552 1.1371 0.4568 37 1 3.1017 3.2199 -1.5574 38 1 4.8118 2.8946 -1.1858 39 1 4.5663 6.8364 -1.4888 40 1 3.4916 4.6831 2.6946 41 1 2.2358 6.1448 4.2274 42 1 1.2833 8.2618 3.4061 43 1 1.5931 8.9206 1.0539 44 1 2.8566 7.4632 -0.4767 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224929004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = -23.748691 kcal Electronic energy + Delta-G solvation = -22549.096919 eV Core-core repulsion = 19466.281851 eV Total energy + Delta-G solvation = -3082.815068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.75424 -38.16534 -36.27646 -33.24315 -31.45186 -30.82243 -30.09865 -29.86318 -27.08721 -25.94163 -23.79046 -23.08296 -22.01563 -21.45707 -20.37101 -19.44434 -17.23413 -16.35701 -15.95600 -15.87092 -15.06410 -14.62294 -14.36533 -13.87647 -13.80076 -13.54597 -13.46002 -12.93684 -12.76557 -12.57275 -12.39076 -12.06777 -11.92728 -11.85912 -11.66169 -11.38868 -11.14500 -10.94651 -10.83814 -10.77606 -10.47197 -10.30841 -10.22739 -10.12863 -9.65307 -9.42152 -8.56918 -8.30614 -8.11074 -7.95764 -7.59462 -6.48023 -4.23694 2.21849 2.25157 3.38582 3.40705 3.56531 4.19862 4.41029 4.58061 4.84153 5.06529 5.24123 5.30425 5.34090 5.54254 5.61021 5.61933 5.62594 5.67984 5.74614 5.78899 5.81364 5.84774 6.00015 6.03672 6.19388 6.19536 6.23542 6.33015 6.37902 6.42116 6.44675 6.59046 6.68204 6.81128 6.90717 6.97481 7.24594 7.36647 7.40440 7.44295 7.58586 7.83085 7.94936 8.10766 8.58727 8.70028 9.48673 10.86085 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.006433 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.821517 B = 4351.677523 C = 5617.236829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.046 3.954 5 C -0.184 4.184 6 C 0.052 3.948 7 C 0.080 3.920 8 O -0.385 6.385 9 C 0.229 3.771 10 H 0.030 0.970 11 C -0.600 4.600 12 H 0.059 0.941 13 C 0.026 3.974 14 N -0.901 5.901 15 Si 1.070 2.930 16 H -0.286 1.286 17 H -0.287 1.287 18 H -0.283 1.283 19 C -0.030 4.030 20 C -0.104 4.104 21 C -0.131 4.131 22 C -0.150 4.150 23 C -0.125 4.125 24 C -0.118 4.118 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.270 0.730 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 -8.834 3.840 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 N -0.256 5.256 4 C -0.082 4.082 5 C -0.243 4.243 6 C -0.076 4.076 7 C 0.003 3.997 8 O -0.305 6.305 9 C 0.173 3.827 10 H 0.048 0.952 11 C -0.638 4.638 12 H 0.077 0.923 13 C -0.179 4.179 14 N -0.538 5.538 15 Si 0.898 3.102 16 H -0.213 1.213 17 H -0.213 1.213 18 H -0.209 1.209 19 C -0.031 4.031 20 C -0.122 4.122 21 C -0.149 4.149 22 C -0.168 4.168 23 C -0.143 4.143 24 C -0.137 4.137 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.425 -7.699 3.174 10.518 hybrid contribution -0.625 -1.173 0.934 1.624 sum -7.050 -8.872 4.108 12.053 Atomic orbital electron populations 1.21759 0.95325 1.00688 1.02497 1.22118 0.95954 0.90158 1.00238 1.62296 1.17993 1.15848 1.29456 1.22367 0.97618 1.01937 0.86231 1.22327 1.02276 0.99585 1.00080 1.22292 0.88415 0.96831 1.00037 1.22176 0.99108 0.89100 0.89361 1.87692 1.89843 1.20021 1.32977 1.18800 0.93388 0.77841 0.92715 0.95213 1.22301 0.92435 1.24132 1.24920 0.92294 1.25863 1.06485 0.92411 0.93142 1.70815 1.12106 1.36764 1.34087 0.83530 0.74204 0.76034 0.76472 1.21287 1.21320 1.20885 1.20410 0.91815 0.95470 0.95419 1.20849 0.98636 0.99372 0.93348 1.20990 0.99812 0.95325 0.98792 1.20835 1.02728 0.97526 0.95741 1.20938 1.00197 0.99158 0.93986 1.20966 0.97874 0.94994 0.99829 0.92166 0.92974 0.92659 0.91544 0.94911 0.87455 0.92295 0.93960 0.91366 0.92723 0.90804 0.93336 0.94186 0.93200 0.91806 0.86604 0.87450 0.87522 0.87290 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.04 37.15 0.37 -1.22 16 2 C 0.04 0.53 5.60 -3.82 -0.02 0.51 16 3 N -0.53 -8.02 4.61 -234.63 -1.08 -9.10 16 4 C 0.05 0.71 5.46 -3.83 -0.02 0.69 16 5 C -0.18 -2.66 9.11 37.16 0.34 -2.32 16 6 C 0.05 0.81 5.30 -3.82 -0.02 0.79 16 7 C 0.08 1.54 6.04 37.16 0.22 1.76 16 8 O -0.39 -8.34 6.34 -35.23 -0.22 -8.57 16 9 C 0.23 5.58 2.15 -29.04 -0.06 5.52 16 10 H 0.03 0.78 6.00 -51.93 -0.31 0.47 16 11 C -0.60 -16.19 8.62 -34.44 -0.30 -16.48 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.03 0.72 5.46 -17.82 -0.10 0.63 16 14 N -0.90 -25.74 13.63 55.43 0.76 -24.98 16 15 Si 1.07 24.65 29.90 -169.99 -5.08 19.56 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 C -0.03 -0.70 4.96 -104.62 -0.52 -1.22 16 20 C -0.10 -2.18 9.36 -39.58 -0.37 -2.55 16 21 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 22 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 23 C -0.12 -2.39 10.05 -39.58 -0.40 -2.78 16 24 C -0.12 -2.61 9.49 -39.58 -0.38 -2.99 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.63 6.49 -51.93 -0.34 0.29 16 28 H 0.07 0.76 7.70 -51.93 -0.40 0.36 16 29 H 0.03 0.40 6.17 -51.93 -0.32 0.07 16 30 H 0.11 2.00 5.76 -51.93 -0.30 1.70 16 31 H 0.06 0.85 6.36 -51.93 -0.33 0.52 16 32 H 0.04 0.55 6.32 -51.93 -0.33 0.22 16 33 H 0.07 1.11 6.36 -51.93 -0.33 0.78 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.01 7.69 -51.92 -0.40 0.61 16 36 H 0.05 0.78 5.62 -51.93 -0.29 0.48 16 37 H 0.04 0.78 8.09 -51.92 -0.42 0.36 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.27 7.58 5.26 -40.82 -0.21 7.37 16 40 H 0.12 2.41 7.75 -52.49 -0.41 2.00 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.12 2.61 6.93 -52.49 -0.36 2.24 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -28.44 344.58 -9.40 -37.84 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.92 Total: 5.59 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -2.04 Total: -25.54 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.33 Total: -34.08 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.22 Total: -8.57 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.44 -9.40 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224929004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.096 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds