Wall clock time and date at job start Mon Mar 30 2020 02:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00378 * 2 1 4 4 C 1.46906 * 110.99664 * 123.95505 * 2 1 3 5 5 C 1.52994 * 109.47157 * 66.04480 * 4 2 1 6 6 C 1.53007 * 109.46664 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46782 * 180.02562 * 6 5 4 8 8 O 1.42899 * 109.47075 * 179.97438 * 7 6 5 9 9 C 1.42898 * 114.00025 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47259 * 330.00253 * 9 8 7 11 11 C 1.50699 * 109.46964 * 90.00040 * 9 8 7 12 12 H 1.07996 * 120.00370 * 239.99770 * 11 9 8 13 13 C 1.37882 * 119.99790 * 60.00152 * 11 9 8 14 14 N 1.31508 * 120.00257 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99910 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47081 * 59.99441 * 15 13 11 17 17 H 1.48496 * 109.47319 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46734 * 299.99914 * 15 13 11 19 19 C 1.50703 * 109.47171 * 210.00101 * 9 8 7 20 20 C 1.38236 * 119.99787 * 324.72807 * 19 9 8 21 21 C 1.38241 * 119.99636 * 179.81278 * 20 19 9 22 22 C 1.38234 * 120.00115 * 0.39672 * 21 20 19 23 23 C 1.38240 * 119.99714 * 359.85290 * 22 21 20 24 24 C 1.38228 * 120.00011 * 145.00451 * 19 9 8 25 25 H 1.09004 * 109.47302 * 296.04700 * 1 2 3 26 26 H 1.09002 * 109.47252 * 56.04917 * 1 2 3 27 27 H 1.09003 * 109.47464 * 176.04848 * 1 2 3 28 28 H 1.08996 * 109.47400 * 183.95428 * 3 2 1 29 29 H 1.09003 * 109.47282 * 303.95505 * 3 2 1 30 30 H 1.09003 * 109.47101 * 63.94877 * 3 2 1 31 31 H 1.09000 * 109.47028 * 306.04347 * 4 2 1 32 32 H 1.09006 * 109.46740 * 186.04786 * 4 2 1 33 33 H 1.09000 * 109.47260 * 60.00009 * 5 4 2 34 34 H 1.08997 * 109.47492 * 299.99570 * 5 4 2 35 35 H 1.09000 * 109.47238 * 60.00040 * 6 5 4 36 36 H 1.08998 * 109.47224 * 299.99330 * 6 5 4 37 37 H 1.09000 * 109.47373 * 59.99913 * 7 6 5 38 38 H 1.09007 * 109.46576 * 299.99792 * 7 6 5 39 39 H 0.97002 * 120.00075 * 180.02562 * 14 13 11 40 40 H 1.07996 * 120.00216 * 359.97438 * 20 19 9 41 41 H 1.08000 * 119.99857 * 180.22806 * 21 20 19 42 42 H 1.07998 * 120.00030 * 179.84064 * 22 21 20 43 43 H 1.08003 * 119.99655 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.00508 * 359.97379 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 6 2.1802 -3.0405 2.1550 7 6 1.8167 -4.5172 1.9874 8 8 2.3297 -5.2625 3.0934 9 6 2.0433 -6.6613 3.0347 10 1 1.1030 -6.8177 2.5059 11 6 3.1542 -7.3713 2.3049 12 1 2.9404 -7.9240 1.4020 13 6 4.4437 -7.3154 2.7899 14 7 4.7042 -6.6421 3.8891 15 14 5.8209 -8.1950 1.8849 16 1 5.9322 -7.6537 0.5065 17 1 7.1019 -7.9815 2.6050 18 1 5.5234 -9.6486 1.8233 19 6 1.9301 -7.2100 4.4337 20 6 2.7374 -6.7115 5.4391 21 6 2.6309 -7.2122 6.7232 22 6 1.7230 -8.2171 7.0002 23 6 0.9193 -8.7192 5.9936 24 6 1.0232 -8.2158 4.7104 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3431 -0.0709 29 1 1.5899 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5610 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1757 33 1 2.0657 -2.6214 0.0452 34 1 0.5471 -2.3475 0.9324 35 1 1.7462 -2.6618 3.0804 36 1 3.2644 -2.9356 2.1925 37 1 2.2509 -4.8956 1.0620 38 1 0.7323 -4.6224 1.9496 39 1 5.6114 -6.6026 4.2301 40 1 3.4494 -5.9291 5.2219 41 1 3.2590 -6.8202 7.5095 42 1 1.6416 -8.6100 8.0028 43 1 0.2102 -9.5046 6.2100 44 1 0.3953 -8.6082 3.9241 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224990667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:26 Heat of formation + Delta-G solvation = -20.399250 kcal Electronic energy + Delta-G solvation = -21406.304997 eV Core-core repulsion = 18323.635173 eV Total energy + Delta-G solvation = -3082.669825 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.24266 -37.83242 -36.37728 -33.75849 -32.41886 -30.39436 -29.58863 -28.04994 -27.67989 -26.57299 -23.98025 -22.72137 -21.45553 -20.98345 -20.60277 -19.99561 -16.69674 -15.87452 -15.78745 -15.40976 -15.25840 -14.84123 -14.58986 -14.47626 -14.01989 -13.44595 -13.25721 -13.06690 -12.53261 -12.50579 -12.17471 -12.11234 -11.92655 -11.78343 -11.48340 -11.35883 -11.20200 -10.98878 -10.92093 -10.68050 -10.51393 -10.29318 -10.09586 -9.99006 -9.61840 -9.15694 -8.69296 -8.45673 -8.03847 -7.69384 -7.38374 -5.90842 -4.24306 2.52674 2.68023 3.28562 3.32923 3.35614 3.86102 4.36333 4.79296 5.02044 5.03602 5.10161 5.19675 5.25309 5.33258 5.45638 5.50544 5.61722 5.70460 5.72226 5.77538 5.85493 5.95145 6.01841 6.03880 6.14397 6.18966 6.32378 6.42417 6.43724 6.63144 6.79176 6.81985 6.88519 6.94020 6.95640 6.99657 7.18071 7.35318 7.56827 7.68043 7.90761 8.09682 8.13814 8.36431 8.60585 9.01498 9.51065 10.93395 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.004176 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.361968 B = 6703.649804 C = 7775.640052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.550 5.550 3 C 0.024 3.976 4 C 0.055 3.945 5 C -0.112 4.112 6 C -0.113 4.113 7 C 0.075 3.925 8 O -0.370 6.370 9 C 0.246 3.754 10 H 0.015 0.985 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.085 3.915 14 N -0.848 5.848 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.277 1.277 19 C -0.040 4.040 20 C -0.044 4.044 21 C -0.155 4.155 22 C -0.147 4.147 23 C -0.151 4.151 24 C -0.131 4.131 25 H 0.024 0.976 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.021 0.979 39 H 0.262 0.738 40 H 0.165 0.835 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 9.703 -2.285 11.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.274 5.274 3 C -0.124 4.124 4 C -0.072 4.072 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.003 4.003 8 O -0.290 6.290 9 C 0.190 3.810 10 H 0.033 0.967 11 C -0.582 4.582 12 H 0.077 0.923 13 C -0.120 4.120 14 N -0.483 5.483 15 Si 0.717 3.283 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.041 4.041 20 C -0.063 4.063 21 C -0.173 4.173 22 C -0.166 4.166 23 C -0.169 4.169 24 C -0.149 4.149 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.182 0.818 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.592 9.619 -2.453 11.393 hybrid contribution 0.468 -0.475 0.111 0.676 sum -5.124 9.144 -2.342 10.740 Atomic orbital electron populations 1.22439 0.87587 1.02607 1.00092 1.61993 1.07987 1.13549 1.43865 1.22370 1.00843 0.88997 1.00184 1.22188 1.00251 0.94118 0.90670 1.21508 1.00830 0.93237 0.99420 1.21419 1.01835 0.94525 0.97322 1.22043 0.95285 0.90974 0.92018 1.87984 1.78033 1.20650 1.42295 1.18519 0.93698 0.79479 0.89325 0.96667 1.21403 0.92891 1.33726 1.10139 0.92321 1.24963 0.98634 0.94179 0.94258 1.69806 1.19650 1.39191 1.19668 0.86706 0.81304 0.80206 0.80052 1.20104 1.21061 1.20222 1.20031 0.93265 0.95129 0.95665 1.21880 0.94757 1.00013 0.89608 1.21159 0.99635 0.99008 0.97543 1.20811 0.98704 0.99174 0.97869 1.20695 1.01186 1.01311 0.93722 1.20795 0.99788 0.98509 0.95805 0.95783 0.91726 0.90838 0.91348 0.91601 0.95843 0.94838 0.90645 0.91078 0.92223 0.92161 0.91280 0.94193 0.96096 0.92787 0.81820 0.88087 0.88339 0.88071 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.32 60.06 0.56 0.77 16 2 N -0.55 -6.37 5.02 -251.26 -1.26 -7.63 16 3 C 0.02 0.23 9.57 60.06 0.57 0.81 16 4 C 0.06 0.68 4.96 -3.82 -0.02 0.66 16 5 C -0.11 -1.53 5.14 -26.73 -0.14 -1.67 16 6 C -0.11 -1.88 5.58 -26.72 -0.15 -2.03 16 7 C 0.07 1.49 5.74 37.16 0.21 1.71 16 8 O -0.37 -9.06 8.53 -35.23 -0.30 -9.36 16 9 C 0.25 6.17 2.59 -29.03 -0.08 6.10 16 10 H 0.02 0.37 7.70 -51.93 -0.40 -0.03 16 11 C -0.54 -14.70 8.89 -34.44 -0.31 -15.00 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.09 2.28 5.24 -17.82 -0.09 2.19 16 14 N -0.85 -22.88 8.50 55.43 0.47 -22.41 16 15 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.04 -0.99 4.80 -104.62 -0.50 -1.49 16 20 C -0.04 -1.06 7.46 -39.58 -0.30 -1.36 16 21 C -0.16 -3.33 10.05 -39.58 -0.40 -3.73 16 22 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 23 C -0.15 -3.01 10.05 -39.58 -0.40 -3.41 16 24 C -0.13 -2.88 9.68 -39.59 -0.38 -3.26 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.07 0.75 6.47 -51.93 -0.34 0.41 16 28 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 32 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.77 6.55 -51.93 -0.34 0.43 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.39 8.09 -51.92 -0.42 -0.03 16 39 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.16 4.30 5.50 -52.49 -0.29 4.01 16 41 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 44 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -28.34 354.08 -10.24 -38.58 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.66 Total: 2.62 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -1.81 Total: -23.03 kcal Atomic # 7 Polarization: -29.25 SS G_CDS: -0.79 Total: -30.04 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.30 Total: -9.36 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.34 -10.24 -38.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224990667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.182 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds