Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00378 * 2 1 4 4 C 1.46906 * 110.99664 * 123.95505 * 2 1 3 5 5 C 1.52994 * 109.47157 * 66.04480 * 4 2 1 6 6 C 1.53007 * 109.46664 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46782 * 180.02562 * 6 5 4 8 8 O 1.42899 * 109.47075 * 179.97438 * 7 6 5 9 9 C 1.42898 * 114.00025 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47259 * 330.00253 * 9 8 7 11 11 C 1.50699 * 109.46964 * 90.00040 * 9 8 7 12 12 H 1.07996 * 120.00370 * 239.99770 * 11 9 8 13 13 C 1.37882 * 119.99790 * 60.00152 * 11 9 8 14 14 N 1.31508 * 120.00257 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99910 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47081 * 59.99441 * 15 13 11 17 17 H 1.48496 * 109.47319 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46734 * 299.99914 * 15 13 11 19 19 C 1.50703 * 109.47171 * 210.00101 * 9 8 7 20 20 C 1.38236 * 119.99787 * 324.72807 * 19 9 8 21 21 C 1.38241 * 119.99636 * 179.81278 * 20 19 9 22 22 C 1.38234 * 120.00115 * 0.39672 * 21 20 19 23 23 C 1.38240 * 119.99714 * 359.85290 * 22 21 20 24 24 C 1.38228 * 120.00011 * 145.00451 * 19 9 8 25 25 H 1.09004 * 109.47302 * 296.04700 * 1 2 3 26 26 H 1.09002 * 109.47252 * 56.04917 * 1 2 3 27 27 H 1.09003 * 109.47464 * 176.04848 * 1 2 3 28 28 H 1.08996 * 109.47400 * 183.95428 * 3 2 1 29 29 H 1.09003 * 109.47282 * 303.95505 * 3 2 1 30 30 H 1.09003 * 109.47101 * 63.94877 * 3 2 1 31 31 H 1.09000 * 109.47028 * 306.04347 * 4 2 1 32 32 H 1.09006 * 109.46740 * 186.04786 * 4 2 1 33 33 H 1.09000 * 109.47260 * 60.00009 * 5 4 2 34 34 H 1.08997 * 109.47492 * 299.99570 * 5 4 2 35 35 H 1.09000 * 109.47238 * 60.00040 * 6 5 4 36 36 H 1.08998 * 109.47224 * 299.99330 * 6 5 4 37 37 H 1.09000 * 109.47373 * 59.99913 * 7 6 5 38 38 H 1.09007 * 109.46576 * 299.99792 * 7 6 5 39 39 H 0.97002 * 120.00075 * 180.02562 * 14 13 11 40 40 H 1.07996 * 120.00216 * 359.97438 * 20 19 9 41 41 H 1.08000 * 119.99857 * 180.22806 * 21 20 19 42 42 H 1.07998 * 120.00030 * 179.84064 * 22 21 20 43 43 H 1.08003 * 119.99655 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.00508 * 359.97379 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 6 2.1802 -3.0405 2.1550 7 6 1.8167 -4.5172 1.9874 8 8 2.3297 -5.2625 3.0934 9 6 2.0433 -6.6613 3.0347 10 1 1.1030 -6.8177 2.5059 11 6 3.1542 -7.3713 2.3049 12 1 2.9404 -7.9240 1.4020 13 6 4.4437 -7.3154 2.7899 14 7 4.7042 -6.6421 3.8891 15 14 5.8209 -8.1950 1.8849 16 1 5.9322 -7.6537 0.5065 17 1 7.1019 -7.9815 2.6050 18 1 5.5234 -9.6486 1.8233 19 6 1.9301 -7.2100 4.4337 20 6 2.7374 -6.7115 5.4391 21 6 2.6309 -7.2122 6.7232 22 6 1.7230 -8.2171 7.0002 23 6 0.9193 -8.7192 5.9936 24 6 1.0232 -8.2158 4.7104 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3431 -0.0709 29 1 1.5899 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5610 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1757 33 1 2.0657 -2.6214 0.0452 34 1 0.5471 -2.3475 0.9324 35 1 1.7462 -2.6618 3.0804 36 1 3.2644 -2.9356 2.1925 37 1 2.2509 -4.8956 1.0620 38 1 0.7323 -4.6224 1.9496 39 1 5.6114 -6.6026 4.2301 40 1 3.4494 -5.9291 5.2219 41 1 3.2590 -6.8202 7.5095 42 1 1.6416 -8.6100 8.0028 43 1 0.2102 -9.5046 6.2100 44 1 0.3953 -8.6082 3.9241 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224990667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = -35.277387 kcal Electronic energy + Delta-G solvation = -21406.950162 eV Core-core repulsion = 18323.635173 eV Total energy + Delta-G solvation = -3083.314989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95504 -38.85143 -38.02611 -35.28219 -34.15073 -32.12021 -31.26756 -29.35555 -28.48564 -28.40172 -25.26972 -24.46238 -23.02771 -22.36516 -21.88444 -21.57213 -18.65476 -17.46775 -17.17602 -16.81440 -16.51695 -16.33337 -15.93715 -15.75531 -15.54341 -15.05284 -14.80868 -14.63971 -14.09183 -13.80033 -13.49749 -13.26141 -13.18585 -13.17588 -12.86106 -12.79737 -12.63251 -12.55361 -12.45029 -12.15723 -12.14244 -11.81118 -11.65591 -11.48468 -11.31059 -11.02454 -10.68371 -9.86546 -9.40232 -9.31529 -9.15287 -7.88795 -6.31681 0.83210 1.00700 1.40557 1.40760 1.47621 2.40595 2.90771 3.14391 3.33905 3.50060 3.96385 4.09034 4.25852 4.32956 4.37813 4.39056 4.41227 4.49744 4.55926 4.60225 4.65878 4.68094 4.72960 4.78362 4.79027 4.90683 4.97886 5.00108 5.02432 5.09999 5.21261 5.24890 5.37546 5.41876 5.48546 5.63742 5.70157 5.89395 6.06424 6.07209 6.11800 6.17935 6.38064 6.54483 6.66476 7.13077 7.47168 8.90862 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.004176 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.361968 B = 6703.649804 C = 7775.640052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.566 5.566 3 C 0.024 3.976 4 C 0.060 3.940 5 C -0.100 4.100 6 C -0.101 4.101 7 C 0.069 3.931 8 O -0.391 6.391 9 C 0.244 3.756 10 H 0.013 0.987 11 C -0.570 4.570 12 H 0.049 0.951 13 C 0.046 3.954 14 N -0.860 5.860 15 Si 0.944 3.056 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.276 1.276 19 C -0.069 4.069 20 C -0.066 4.066 21 C -0.162 4.162 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.144 4.144 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.025 0.975 38 H 0.034 0.966 39 H 0.260 0.740 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 9.529 -1.592 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.290 5.290 3 C -0.124 4.124 4 C -0.067 4.067 5 C -0.138 4.138 6 C -0.139 4.139 7 C -0.008 4.008 8 O -0.310 6.310 9 C 0.188 3.812 10 H 0.031 0.969 11 C -0.607 4.607 12 H 0.068 0.932 13 C -0.158 4.158 14 N -0.495 5.495 15 Si 0.769 3.231 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.201 1.201 19 C -0.070 4.070 20 C -0.085 4.085 21 C -0.180 4.180 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.162 4.162 25 H 0.046 0.954 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.155 0.845 41 H 0.138 0.862 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.347 9.457 -1.763 11.525 hybrid contribution 0.623 -0.407 -0.077 0.749 sum -5.724 9.050 -1.840 10.865 Atomic orbital electron populations 1.22483 0.86697 1.02684 1.00963 1.61982 1.08968 1.14732 1.43300 1.22423 1.00977 0.87972 1.01049 1.22062 1.00206 0.93143 0.91336 1.21376 1.01135 0.93856 0.97431 1.21321 1.00964 0.92683 0.98929 1.22260 0.95875 0.92387 0.90308 1.87945 1.78715 1.20604 1.43780 1.18498 0.92928 0.79710 0.90098 0.96899 1.21623 0.94176 1.34467 1.10406 0.93226 1.25574 1.00330 0.94906 0.94999 1.70015 1.19671 1.39551 1.20247 0.85868 0.79026 0.79112 0.79073 1.19877 1.20524 1.20113 1.20137 0.94887 0.96574 0.95374 1.21681 0.95233 1.00437 0.91198 1.21406 1.00354 0.99423 0.96806 1.21248 0.97128 0.97801 0.99727 1.21141 1.01219 1.01342 0.92586 1.21050 0.99614 0.98110 0.97474 0.95403 0.90254 0.91289 0.91263 0.90196 0.95377 0.94534 0.90916 0.91829 0.91234 0.91843 0.92820 0.95704 0.94760 0.93044 0.84522 0.86187 0.84373 0.84253 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.32 127.69 1.19 1.55 16 2 N -0.57 -12.37 5.02 -948.85 -4.76 -17.13 16 3 C 0.02 0.41 9.57 127.69 1.22 1.63 16 4 C 0.06 1.45 4.96 86.30 0.43 1.87 16 5 C -0.10 -2.72 5.14 30.59 0.16 -2.56 16 6 C -0.10 -3.43 5.58 30.60 0.17 -3.26 16 7 C 0.07 2.86 5.74 71.98 0.41 3.27 16 8 O -0.39 -19.89 8.53 -148.98 -1.27 -21.16 16 9 C 0.24 12.66 2.59 29.10 0.08 12.74 16 10 H 0.01 0.65 7.70 -2.39 -0.02 0.63 16 11 C -0.57 -31.68 8.89 25.60 0.23 -31.45 16 12 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 13 C 0.05 2.52 5.24 84.66 0.44 2.96 16 14 N -0.86 -47.59 8.50 21.45 0.18 -47.41 16 15 Si 0.94 43.49 29.54 68.60 2.03 45.51 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C -0.07 -3.44 4.80 -19.87 -0.10 -3.53 16 20 C -0.07 -3.28 7.46 22.27 0.17 -3.11 16 21 C -0.16 -6.73 10.05 22.27 0.22 -6.51 16 22 C -0.14 -5.13 10.05 22.27 0.22 -4.91 16 23 C -0.14 -5.35 10.05 22.27 0.22 -5.12 16 24 C -0.14 -6.24 9.68 22.27 0.22 -6.02 16 25 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 27 H 0.07 1.32 6.47 -2.39 -0.02 1.30 16 28 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 29 H 0.08 1.15 8.12 -2.39 -0.02 1.13 16 30 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.07 1.76 8.06 -2.38 -0.02 1.74 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.75 6.55 -2.39 -0.02 1.74 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.03 1.31 8.09 -2.38 -0.02 1.29 16 39 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.14 7.46 5.50 -2.91 -0.02 7.44 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 42 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 44 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -61.58 354.08 2.40 -59.18 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.94 Total: 23.45 kcal Atomic # 6 Polarization: -47.73 SS G_CDS: 5.29 Total: -42.44 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -4.58 Total: -64.54 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -1.27 Total: -21.16 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -61.58 2.40 -59.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224990667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.905 kcal (2) G-P(sol) polarization free energy of solvation -61.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds