Wall clock time and date at job start Mon Mar 30 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46891 * 109.47389 * 2 1 4 4 C 1.46898 * 111.00106 * 60.75693 * 3 2 1 5 5 C 1.50700 * 109.46981 * 62.01511 * 4 3 2 6 6 H 1.07997 * 120.00030 * 5.15065 * 5 4 3 7 7 C 1.37877 * 120.00071 * 185.13889 * 5 4 3 8 8 N 1.31519 * 119.99739 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00318 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46736 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46811 * 120.00407 * 9 7 5 12 12 H 1.48492 * 109.47317 * 240.00755 * 9 7 5 13 13 C 1.46901 * 110.99902 * 296.80120 * 3 2 1 14 14 C 1.50700 * 109.47473 * 287.55735 * 13 3 2 15 15 C 1.38170 * 120.02454 * 267.31697 * 14 13 3 16 16 C 1.38248 * 120.04896 * 179.72709 * 15 14 13 17 17 C 1.38283 * 120.11524 * 0.24494 * 16 15 14 18 18 C 1.50704 * 119.97409 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.46842 * 300.00333 * 18 17 16 20 20 C 1.53002 * 109.46605 * 59.99821 * 18 17 16 21 21 C 1.38128 * 120.05603 * 0.02562 * 17 16 15 22 22 C 1.38706 * 120.03031 * 87.56206 * 14 13 3 23 23 O 1.35908 * 120.05209 * 0.02915 * 22 14 13 24 24 H 1.09003 * 109.47570 * 181.87837 * 1 2 3 25 25 H 1.08994 * 109.47292 * 301.88428 * 1 2 3 26 26 H 1.09005 * 109.47057 * 61.88493 * 1 2 3 27 27 H 1.09006 * 109.47067 * 239.99235 * 2 1 3 28 28 H 1.09001 * 109.46819 * 120.00001 * 2 1 3 29 29 H 1.08997 * 109.47260 * 182.01391 * 4 3 2 30 30 H 1.08998 * 109.47430 * 302.01616 * 4 3 2 31 31 H 0.97003 * 119.99747 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47074 * 167.55577 * 13 3 2 33 33 H 1.09001 * 109.47039 * 47.55899 * 13 3 2 34 34 H 1.07993 * 119.97436 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.93939 * 180.27768 * 16 15 14 36 36 H 1.08997 * 109.47057 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47657 * 59.99924 * 19 18 17 38 38 H 1.09004 * 109.47237 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47130 * 299.99788 * 19 18 17 40 40 H 1.08997 * 109.47360 * 60.00991 * 20 18 17 41 41 H 1.09005 * 109.46645 * 179.97438 * 20 18 17 42 42 H 1.08997 * 109.47468 * 299.99815 * 20 18 17 43 43 H 1.07993 * 120.02539 * 179.97438 * 21 17 16 44 44 H 0.96709 * 113.99421 * 263.52723 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5635 2.1046 1.1966 5 6 2.1222 1.4378 2.4272 6 1 2.8189 0.6186 2.3283 7 6 1.7440 1.8737 3.6794 8 7 0.8953 2.8712 3.7998 9 14 2.4359 1.0468 5.2048 10 1 3.3626 -0.0410 4.8008 11 1 3.1720 2.0469 6.0191 12 1 1.3234 0.4775 6.0069 13 6 1.6121 2.0873 -1.2241 14 6 2.4140 1.5704 -2.3907 15 6 3.5864 2.2025 -2.7581 16 6 4.3253 1.7253 -3.8247 17 6 3.8908 0.6177 -4.5294 18 6 4.6991 0.0999 -5.6911 19 6 4.8195 1.1921 -6.7557 20 6 6.0952 -0.2948 -5.2053 21 6 2.7166 -0.0144 -4.1695 22 6 1.9732 0.4626 -3.0995 23 8 0.8174 -0.1575 -2.7434 24 1 -0.3634 -1.0271 0.0337 25 1 -0.3633 0.5428 0.8725 26 1 -0.3633 0.4843 -0.9064 27 1 1.8933 -0.5140 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.9102 3.1371 1.1538 30 1 0.4744 2.0883 1.2373 31 1 0.6289 3.1777 4.6807 32 1 1.7902 3.1563 -1.1060 33 1 0.5517 1.9137 -1.4067 34 1 3.9278 3.0677 -2.2093 35 1 5.2437 2.2181 -4.1075 36 1 4.2036 -0.7718 -6.1186 37 1 5.3152 2.0634 -6.3280 38 1 5.4038 0.8174 -7.5963 39 1 3.8249 1.4733 -7.1018 40 1 6.0095 -1.0730 -4.4469 41 1 6.6797 -0.6698 -6.0455 42 1 6.5910 0.5765 -4.7775 43 1 2.3776 -0.8791 -4.7205 44 1 0.9442 -0.9278 -2.1726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237054384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:20 Heat of formation + Delta-G solvation = -26.967038 kcal Electronic energy + Delta-G solvation = -22027.999337 eV Core-core repulsion = 18945.044711 eV Total energy + Delta-G solvation = -3082.954626 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10514 -37.68885 -36.51238 -34.85907 -32.60360 -30.88167 -29.83838 -28.97399 -27.28357 -26.85138 -24.74595 -23.22259 -22.62858 -21.92000 -20.16557 -19.22380 -17.62851 -16.28371 -16.20343 -15.81430 -15.19780 -14.80031 -14.65742 -14.15139 -14.04751 -13.74978 -13.55003 -13.32762 -12.94545 -12.69399 -12.44001 -11.91438 -11.83739 -11.77532 -11.64175 -11.49426 -11.23450 -11.21370 -10.97459 -10.83254 -10.72687 -10.67038 -10.50143 -10.12233 -9.98499 -9.74755 -9.16249 -8.58045 -8.44218 -8.20852 -7.13651 -6.02459 -4.03395 1.45402 1.54083 3.30461 3.38154 3.42740 3.76994 4.37485 4.43910 4.67304 4.75924 5.04426 5.06809 5.18247 5.26474 5.31671 5.33929 5.44973 5.46659 5.56073 5.67815 5.75513 5.82112 5.83896 5.91976 5.99739 6.03954 6.09139 6.11722 6.21172 6.22320 6.29968 6.52065 6.57484 6.69919 6.74127 6.86537 6.99139 7.05984 7.33904 7.46920 7.80983 7.86797 8.09654 8.21678 8.56814 9.05047 9.60806 11.08286 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.003985 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.733105 B = 7025.250774 C = 7370.759906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.085 3.915 14 C -0.081 4.081 15 C -0.085 4.085 16 C -0.126 4.126 17 C -0.074 4.074 18 C -0.054 4.054 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.150 4.150 22 C 0.111 3.889 23 O -0.498 6.498 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.003 0.997 31 H 0.260 0.740 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.120 0.880 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.562 -5.419 -18.166 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.065 4.065 3 N -0.252 5.252 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.043 4.043 14 C -0.082 4.082 15 C -0.104 4.104 16 C -0.144 4.144 17 C -0.074 4.074 18 C -0.073 4.073 19 C -0.201 4.201 20 C -0.201 4.201 21 C -0.169 4.169 22 C 0.066 3.934 23 O -0.311 6.311 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.021 0.979 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.138 0.862 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.721 -4.885 -18.329 19.813 hybrid contribution -0.436 -0.733 1.266 1.527 sum 5.285 -5.618 -17.062 18.725 Atomic orbital electron populations 1.22491 0.98954 1.01148 1.02858 1.22007 0.92431 0.91685 1.00349 1.62393 1.59280 1.01806 1.01693 1.19802 0.94490 0.93691 0.85672 1.21177 1.25900 1.17302 0.89893 0.91919 1.24978 0.95248 0.95252 0.99107 1.69972 1.33478 1.26862 1.23492 0.86481 0.78797 0.79427 0.82960 1.19697 1.21054 1.21159 1.20993 0.96430 0.98153 0.88747 1.20248 0.95569 0.96235 0.96144 1.20959 0.93598 0.99836 0.96019 1.20901 1.00097 0.96885 0.96480 1.19588 0.94889 0.95867 0.97053 1.20086 0.95594 0.98246 0.93330 1.21852 1.01849 0.98454 0.97904 1.21857 0.95476 1.01768 1.01015 1.21234 0.95289 1.01435 0.98945 1.18270 0.86682 0.93998 0.94485 1.84844 1.27902 1.47297 1.71043 0.93646 0.91154 0.92182 0.94076 0.90198 0.95700 0.97917 0.93028 0.90919 0.93390 0.85605 0.86339 0.90784 0.92357 0.92621 0.92588 0.92469 0.92643 0.92318 0.86172 0.75445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.52 8.22 37.16 0.31 -3.22 16 2 C 0.06 1.21 5.20 -3.83 -0.02 1.19 16 3 N -0.53 -11.25 4.68 -237.52 -1.11 -12.37 16 4 C 0.19 4.82 4.40 -4.98 -0.02 4.80 16 5 C -0.50 -13.95 8.36 -34.44 -0.29 -14.24 16 6 H 0.06 1.73 7.03 -52.49 -0.37 1.36 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.08 1.58 4.84 -4.98 -0.02 1.56 16 14 C -0.08 -1.33 5.13 -104.47 -0.54 -1.87 16 15 C -0.09 -1.27 9.69 -39.60 -0.38 -1.66 16 16 C -0.13 -1.60 8.71 -39.56 -0.34 -1.95 16 17 C -0.07 -0.89 4.78 -104.64 -0.50 -1.40 16 18 C -0.05 -0.51 3.09 -91.77 -0.28 -0.80 16 19 C -0.14 -1.20 9.01 37.15 0.33 -0.86 16 20 C -0.14 -1.25 9.01 37.16 0.33 -0.92 16 21 C -0.15 -1.99 9.61 -39.43 -0.38 -2.37 16 22 C 0.11 1.68 5.74 -39.22 -0.23 1.46 16 23 O -0.50 -7.35 10.17 -19.45 -0.20 -7.55 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.50 6.28 -51.93 -0.33 1.17 16 26 H 0.06 1.05 4.95 -51.93 -0.26 0.79 16 27 H 0.04 0.68 4.40 -51.93 -0.23 0.45 16 28 H 0.08 1.67 6.67 -51.93 -0.35 1.32 16 29 H 0.02 0.69 7.95 -51.93 -0.41 0.27 16 30 H 0.00 0.08 6.18 -51.93 -0.32 -0.24 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 33 H 0.05 0.92 5.45 -51.93 -0.28 0.63 16 34 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.12 1.27 7.10 -52.49 -0.37 0.90 16 36 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 37 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 43 H 0.12 1.38 7.94 -52.49 -0.42 0.96 16 44 H 0.39 4.83 6.22 45.56 0.28 5.12 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -29.91 337.92 -8.93 -38.84 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.30 Total: 4.01 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.13 Total: -18.80 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.37 Total: -38.13 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.20 Total: -7.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.91 -8.93 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237054384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.878 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds