Wall clock time and date at job start Mon Mar 30 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46891 * 109.47389 * 2 1 4 4 C 1.46898 * 111.00106 * 60.75693 * 3 2 1 5 5 C 1.50700 * 109.46981 * 62.01511 * 4 3 2 6 6 H 1.07997 * 120.00030 * 5.15065 * 5 4 3 7 7 C 1.37877 * 120.00071 * 185.13889 * 5 4 3 8 8 N 1.31519 * 119.99739 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00318 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46736 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46811 * 120.00407 * 9 7 5 12 12 H 1.48492 * 109.47317 * 240.00755 * 9 7 5 13 13 C 1.46901 * 110.99902 * 296.80120 * 3 2 1 14 14 C 1.50700 * 109.47473 * 287.55735 * 13 3 2 15 15 C 1.38170 * 120.02454 * 267.31697 * 14 13 3 16 16 C 1.38248 * 120.04896 * 179.72709 * 15 14 13 17 17 C 1.38283 * 120.11524 * 0.24494 * 16 15 14 18 18 C 1.50704 * 119.97409 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.46842 * 300.00333 * 18 17 16 20 20 C 1.53002 * 109.46605 * 59.99821 * 18 17 16 21 21 C 1.38128 * 120.05603 * 0.02562 * 17 16 15 22 22 C 1.38706 * 120.03031 * 87.56206 * 14 13 3 23 23 O 1.35908 * 120.05209 * 0.02915 * 22 14 13 24 24 H 1.09003 * 109.47570 * 181.87837 * 1 2 3 25 25 H 1.08994 * 109.47292 * 301.88428 * 1 2 3 26 26 H 1.09005 * 109.47057 * 61.88493 * 1 2 3 27 27 H 1.09006 * 109.47067 * 239.99235 * 2 1 3 28 28 H 1.09001 * 109.46819 * 120.00001 * 2 1 3 29 29 H 1.08997 * 109.47260 * 182.01391 * 4 3 2 30 30 H 1.08998 * 109.47430 * 302.01616 * 4 3 2 31 31 H 0.97003 * 119.99747 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47074 * 167.55577 * 13 3 2 33 33 H 1.09001 * 109.47039 * 47.55899 * 13 3 2 34 34 H 1.07993 * 119.97436 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.93939 * 180.27768 * 16 15 14 36 36 H 1.08997 * 109.47057 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47657 * 59.99924 * 19 18 17 38 38 H 1.09004 * 109.47237 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47130 * 299.99788 * 19 18 17 40 40 H 1.08997 * 109.47360 * 60.00991 * 20 18 17 41 41 H 1.09005 * 109.46645 * 179.97438 * 20 18 17 42 42 H 1.08997 * 109.47468 * 299.99815 * 20 18 17 43 43 H 1.07993 * 120.02539 * 179.97438 * 21 17 16 44 44 H 0.96709 * 113.99421 * 263.52723 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5635 2.1046 1.1966 5 6 2.1222 1.4378 2.4272 6 1 2.8189 0.6186 2.3283 7 6 1.7440 1.8737 3.6794 8 7 0.8953 2.8712 3.7998 9 14 2.4359 1.0468 5.2048 10 1 3.3626 -0.0410 4.8008 11 1 3.1720 2.0469 6.0191 12 1 1.3234 0.4775 6.0069 13 6 1.6121 2.0873 -1.2241 14 6 2.4140 1.5704 -2.3907 15 6 3.5864 2.2025 -2.7581 16 6 4.3253 1.7253 -3.8247 17 6 3.8908 0.6177 -4.5294 18 6 4.6991 0.0999 -5.6911 19 6 4.8195 1.1921 -6.7557 20 6 6.0952 -0.2948 -5.2053 21 6 2.7166 -0.0144 -4.1695 22 6 1.9732 0.4626 -3.0995 23 8 0.8174 -0.1575 -2.7434 24 1 -0.3634 -1.0271 0.0337 25 1 -0.3633 0.5428 0.8725 26 1 -0.3633 0.4843 -0.9064 27 1 1.8933 -0.5140 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.9102 3.1371 1.1538 30 1 0.4744 2.0883 1.2373 31 1 0.6289 3.1777 4.6807 32 1 1.7902 3.1563 -1.1060 33 1 0.5517 1.9137 -1.4067 34 1 3.9278 3.0677 -2.2093 35 1 5.2437 2.2181 -4.1075 36 1 4.2036 -0.7718 -6.1186 37 1 5.3152 2.0634 -6.3280 38 1 5.4038 0.8174 -7.5963 39 1 3.8249 1.4733 -7.1018 40 1 6.0095 -1.0730 -4.4469 41 1 6.6797 -0.6698 -6.0455 42 1 6.5910 0.5765 -4.7775 43 1 2.3776 -0.8791 -4.7205 44 1 0.9442 -0.9278 -2.1726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237054384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:20 Heat of formation + Delta-G solvation = -45.272758 kcal Electronic energy + Delta-G solvation = -22028.793133 eV Core-core repulsion = 18945.044711 eV Total energy + Delta-G solvation = -3083.748421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.26372 -38.95509 -37.88854 -35.85218 -34.68755 -32.09126 -31.10772 -30.55879 -28.54607 -27.91941 -26.23259 -25.02822 -23.70623 -23.18082 -21.28299 -20.74151 -18.78960 -18.28431 -17.38927 -17.06867 -16.57176 -16.55215 -15.97581 -15.53081 -15.30476 -14.79381 -14.65423 -14.51415 -14.27424 -14.13619 -13.64287 -13.17624 -13.15125 -13.11093 -12.86374 -12.85498 -12.62597 -12.54779 -12.50455 -12.37851 -12.03867 -11.90639 -11.83729 -11.54670 -11.49742 -11.30575 -11.03958 -10.61091 -9.67056 -9.35686 -8.88744 -8.19001 -6.28447 0.35114 0.44631 1.40171 1.41040 1.54261 2.40362 2.68140 3.13867 3.27872 3.51588 3.78323 3.89431 4.06025 4.14113 4.24440 4.32115 4.37767 4.43626 4.52807 4.55291 4.65192 4.71377 4.75851 4.87291 4.91840 4.98945 5.00980 5.05196 5.08839 5.10782 5.21927 5.26211 5.35834 5.39104 5.44996 5.52539 5.54050 5.66757 5.68355 5.73409 5.98608 6.06915 6.36353 6.65027 6.79210 6.88777 7.41011 8.92045 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.003985 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.733105 B = 7025.250774 C = 7370.759906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.066 3.934 3 N -0.534 5.534 4 C 0.204 3.796 5 C -0.516 4.516 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.092 3.908 14 C -0.107 4.107 15 C -0.097 4.097 16 C -0.123 4.123 17 C -0.065 4.065 18 C -0.053 4.053 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.151 4.151 22 C 0.102 3.898 23 O -0.505 6.505 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.060 0.940 29 H -0.005 1.005 30 H -0.022 1.022 31 H 0.263 0.737 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.141 0.859 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -7.296 -19.823 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.062 4.062 3 N -0.257 5.257 4 C 0.078 3.922 5 C -0.554 4.554 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.035 4.035 14 C -0.108 4.108 15 C -0.116 4.116 16 C -0.141 4.141 17 C -0.065 4.065 18 C -0.071 4.071 19 C -0.199 4.199 20 C -0.200 4.200 21 C -0.170 4.170 22 C 0.057 3.943 23 O -0.319 6.319 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.013 0.987 30 H -0.004 1.004 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.159 0.841 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 7.216 -6.775 -20.005 22.320 hybrid contribution -0.877 -0.148 1.659 1.882 sum 6.338 -6.923 -18.347 20.608 Atomic orbital electron populations 1.22336 0.98084 1.02476 1.01144 1.22019 0.93096 0.90265 1.00831 1.62298 1.59504 1.02741 1.01182 1.19430 0.92705 0.92551 0.87501 1.21434 1.25836 1.17256 0.90914 0.92085 1.25872 0.95456 0.95779 1.02445 1.70100 1.34732 1.28294 1.24411 0.85376 0.78246 0.78530 0.78726 1.18727 1.20549 1.20481 1.20883 0.96589 0.97435 0.88622 1.20086 0.96551 0.97952 0.96198 1.21055 0.93518 1.00013 0.96991 1.21130 1.00456 0.96985 0.95499 1.19982 0.94491 0.94893 0.97177 1.20162 0.95609 0.98916 0.92421 1.21849 1.01902 0.98112 0.98087 1.21855 0.95126 1.01527 1.01527 1.21470 0.95255 1.02007 0.98246 1.18384 0.86992 0.93808 0.95120 1.84823 1.28021 1.47738 1.71289 0.90564 0.95115 0.91653 0.90976 0.92149 0.98707 1.00387 0.92806 0.92135 0.94111 0.85935 0.84127 0.89719 0.92351 0.90855 0.93132 0.93256 0.90829 0.92450 0.84091 0.74485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.58 8.22 71.98 0.59 -5.99 16 2 C 0.07 2.51 5.20 86.30 0.45 2.96 16 3 N -0.53 -23.52 4.68 -905.39 -4.23 -27.75 16 4 C 0.20 11.02 4.40 85.56 0.38 11.40 16 5 C -0.52 -29.37 8.36 25.60 0.21 -29.15 16 6 H 0.06 3.43 7.03 -2.91 -0.02 3.41 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 9 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.09 3.59 4.84 85.56 0.41 4.00 16 14 C -0.11 -3.51 5.13 -19.77 -0.10 -3.61 16 15 C -0.10 -2.86 9.69 22.26 0.22 -2.64 16 16 C -0.12 -2.90 8.71 22.28 0.19 -2.71 16 17 C -0.07 -1.41 4.78 -19.88 -0.10 -1.51 16 18 C -0.05 -0.82 3.09 -11.54 -0.04 -0.85 16 19 C -0.14 -1.91 9.01 71.98 0.65 -1.27 16 20 C -0.14 -2.03 9.01 71.98 0.65 -1.38 16 21 C -0.15 -3.64 9.61 22.37 0.21 -3.42 16 22 C 0.10 2.97 5.74 22.50 0.13 3.09 16 23 O -0.50 -14.19 10.17 -92.51 -0.94 -15.13 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.03 1.34 6.28 -2.39 -0.02 1.33 16 26 H 0.06 2.29 4.95 -2.38 -0.01 2.27 16 27 H 0.07 2.31 4.40 -2.38 -0.01 2.30 16 28 H 0.06 2.54 6.67 -2.39 -0.02 2.52 16 29 H -0.01 -0.30 7.95 -2.39 -0.02 -0.32 16 30 H -0.02 -1.25 6.18 -2.39 -0.01 -1.27 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.06 2.42 7.79 -2.38 -0.02 2.40 16 33 H 0.04 1.62 5.45 -2.39 -0.01 1.61 16 34 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.14 2.65 7.10 -2.91 -0.02 2.63 16 36 H 0.08 1.17 7.87 -2.39 -0.02 1.16 16 37 H 0.06 0.79 7.39 -2.39 -0.02 0.77 16 38 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.06 0.83 7.39 -2.39 -0.02 0.81 16 43 H 0.14 2.77 7.94 -2.91 -0.02 2.75 16 44 H 0.40 9.12 6.22 -74.05 -0.46 8.66 16 Total: -1.00 -65.85 337.92 1.99 -63.86 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.53 Total: 19.30 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 4.33 Total: -30.48 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -3.95 Total: -84.17 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.94 Total: -15.13 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -65.85 1.99 -63.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237054384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.588 kcal (2) G-P(sol) polarization free energy of solvation -65.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds