Wall clock time and date at job start Mon Mar 30 2020 02:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47710 * 2 1 4 4 N 1.30838 * 125.90056 * 275.22060 * 3 2 1 5 5 N 1.40078 * 108.20538 * 180.25537 * 4 3 2 6 6 H 0.97000 * 126.03816 * 179.70628 * 5 4 3 7 7 C 1.34949 * 107.92878 * 359.71815 * 5 4 3 8 8 C 1.35314 * 107.74370 * 0.02562 * 7 5 4 9 9 C 1.50697 * 126.04154 * 180.02562 * 8 7 5 10 10 N 1.46901 * 109.47060 * 254.84728 * 9 8 7 11 11 C 1.46907 * 110.99625 * 72.49077 * 10 9 8 12 12 C 1.50704 * 109.46755 * 195.66423 * 11 10 9 13 13 H 1.07992 * 120.00404 * 5.02309 * 12 11 10 14 14 C 1.37881 * 119.99563 * 185.03370 * 12 11 10 15 15 N 1.31515 * 120.00244 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99640 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46921 * 89.99561 * 16 14 12 18 18 H 1.48500 * 109.46954 * 209.99233 * 16 14 12 19 19 H 1.48490 * 109.47175 * 329.99791 * 16 14 12 20 20 C 1.46901 * 111.00146 * 196.43951 * 10 9 8 21 21 C 1.54957 * 110.92560 * 312.92976 * 20 10 9 22 22 C 1.54269 * 104.16091 * 156.29384 * 21 20 10 23 23 C 1.53881 * 106.63918 * 336.44510 * 22 21 20 24 24 C 1.54270 * 106.59651 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.47124 * 59.99794 * 1 2 3 26 26 H 1.09000 * 109.47519 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47392 * 300.00180 * 1 2 3 28 28 H 1.08998 * 109.47223 * 239.99534 * 2 1 3 29 29 H 1.09006 * 109.47124 * 120.00206 * 2 1 3 30 30 H 1.08001 * 126.12912 * 179.97438 * 7 5 4 31 31 H 1.09000 * 109.47683 * 134.85002 * 9 8 7 32 32 H 1.09000 * 109.47020 * 14.84560 * 9 8 7 33 33 H 1.09003 * 109.47123 * 315.65869 * 11 10 9 34 34 H 1.08993 * 109.47305 * 75.66295 * 11 10 9 35 35 H 0.96997 * 120.00052 * 180.02562 * 15 14 12 36 36 H 1.09004 * 110.66860 * 189.62300 * 20 10 9 37 37 H 1.09001 * 110.47702 * 37.64312 * 21 20 10 38 38 H 1.08998 * 110.53128 * 274.97570 * 21 20 10 39 39 H 1.09000 * 110.03633 * 217.13968 * 22 21 20 40 40 H 1.09000 * 110.03143 * 95.75397 * 22 21 20 41 41 H 1.08996 * 110.02855 * 119.25725 * 23 22 21 42 42 H 1.08997 * 110.03298 * 240.64276 * 23 22 21 43 43 H 1.09000 * 110.48519 * 142.28181 * 24 23 22 44 44 H 1.09000 * 110.48579 * 264.79695 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1973 2.1762 -1.0554 5 7 2.6844 3.4194 -0.6320 6 1 2.9009 4.1724 -1.2039 7 6 2.7994 3.3846 0.7122 8 6 2.3996 2.1608 1.1287 9 6 2.3614 1.6787 2.5559 10 7 3.4767 0.7517 2.7897 11 6 4.7568 1.4708 2.8414 12 6 5.8906 0.4889 2.6951 13 1 5.6816 -0.5515 2.4947 14 6 7.1950 0.9189 2.8174 15 7 7.4496 2.1859 3.0611 16 14 8.6005 -0.2983 2.6368 17 1 9.0175 -0.3652 1.2131 18 1 9.7483 0.1441 3.4686 19 1 8.1528 -1.6413 3.0851 20 6 3.2629 -0.0310 4.0143 21 6 2.8264 0.8835 5.1866 22 6 2.0779 -0.0645 6.1462 23 6 1.5857 -1.2509 5.2988 24 6 2.0516 -0.9827 3.8527 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.1487 4.1891 1.3424 31 1 1.4177 1.1656 2.7411 32 1 2.4499 2.5309 3.2298 33 1 4.7984 2.1973 2.0298 34 1 4.8448 1.9878 3.7968 35 1 8.3672 2.4885 3.1468 36 1 4.1615 -0.5902 4.2753 37 1 2.1602 1.6690 4.8298 38 1 3.6975 1.3153 5.6793 39 1 1.2289 0.4518 6.5944 40 1 2.7538 -0.4171 6.9253 41 1 2.0235 -2.1790 5.6660 42 1 0.4980 -1.3108 5.3363 43 1 2.3579 -1.9119 3.3722 44 1 1.2592 -0.5011 3.2798 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237655532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:36 Heat of formation + Delta-G solvation = 58.399510 kcal Electronic energy + Delta-G solvation = -22711.214565 eV Core-core repulsion = 19664.254461 eV Total energy + Delta-G solvation = -3046.960103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80372 -38.45568 -34.78189 -33.82900 -32.45584 -30.28411 -29.69395 -28.28238 -27.54582 -26.25682 -24.02484 -23.72631 -21.61210 -20.48464 -19.80793 -19.12327 -18.49651 -17.09723 -16.22568 -15.55854 -15.11995 -14.57823 -14.47370 -14.18311 -13.70789 -13.58561 -13.29889 -12.98063 -12.74298 -12.60806 -11.97462 -11.93744 -11.71047 -11.55286 -11.18422 -10.92430 -10.88213 -10.82120 -10.74881 -10.65847 -10.58373 -10.20997 -10.11056 -9.92815 -9.86524 -9.67285 -9.13535 -8.89151 -8.35894 -7.94160 -7.05347 -5.96668 -3.96039 2.36350 3.22853 3.32906 3.34876 3.40875 3.44727 4.48030 4.91498 5.07139 5.12308 5.15932 5.25326 5.38946 5.47547 5.54543 5.65192 5.70257 5.75475 5.88204 5.96779 5.97513 6.02925 6.04658 6.11874 6.18782 6.20795 6.27738 6.33044 6.36655 6.46244 6.51755 6.57979 6.60236 6.67620 6.81130 7.00585 7.16168 7.42244 7.47624 7.71607 7.90753 8.16028 8.23451 8.34647 8.66314 9.12778 9.67586 11.13833 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.007662 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.053264 B = 3653.590695 C = 5138.726793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C 0.105 3.895 4 N -0.310 5.310 5 N -0.485 5.485 6 H 0.434 0.566 7 C 0.060 3.940 8 C -0.205 4.205 9 C 0.128 3.872 10 N -0.521 5.521 11 C 0.196 3.804 12 C -0.498 4.498 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.274 1.274 20 C 0.094 3.906 21 C -0.160 4.160 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.120 4.120 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.169 0.831 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.027 0.973 34 H -0.005 1.005 35 H 0.259 0.741 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 -0.951 0.110 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C -0.062 4.062 4 N -0.133 5.133 5 N -0.192 5.192 6 H 0.276 0.724 7 C -0.087 4.087 8 C -0.217 4.217 9 C -0.001 4.001 10 N -0.243 5.243 11 C 0.071 3.929 12 C -0.537 4.537 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.542 5.542 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.198 1.198 20 C -0.016 4.016 21 C -0.199 4.199 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.157 4.157 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.186 0.814 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.013 0.987 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.429 -1.081 -1.515 13.558 hybrid contribution 1.325 0.629 1.214 1.904 sum -12.104 -0.451 -0.301 12.116 Atomic orbital electron populations 1.21690 0.95166 1.01348 1.01715 1.19959 0.94985 0.89379 1.04064 1.22047 0.97771 0.96343 0.90077 1.77140 1.21944 0.91407 1.22840 1.46029 1.54072 1.13326 1.05760 0.72361 1.22332 1.01073 1.00009 0.85286 1.19903 1.11497 0.93538 0.96739 1.20289 0.95432 0.94611 0.89782 1.62157 1.02877 1.25582 1.33724 1.19677 0.84106 0.93475 0.95689 1.21194 0.90063 0.95492 1.46926 0.92021 1.24955 0.98802 0.95141 0.95730 1.69951 1.19599 1.14382 1.50251 0.86587 0.81912 0.81526 0.77921 1.20850 1.21463 1.19849 1.22620 0.97550 0.93863 0.87561 1.23065 0.99862 0.98804 0.98173 1.22030 0.99215 0.96468 0.98025 1.22106 0.99736 0.98136 0.96122 1.22467 0.98162 0.99800 0.95319 0.93040 0.92424 0.92754 0.91090 0.88525 0.81389 0.91298 0.95305 0.95507 0.98732 0.93188 0.88717 0.91833 0.91767 0.92829 0.92364 0.92307 0.92617 0.91774 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.89 37.15 0.37 -1.33 16 2 C -0.04 -0.67 6.35 -27.89 -0.18 -0.84 16 3 C 0.10 1.84 6.47 -82.40 -0.53 1.31 16 4 N -0.31 -5.52 12.70 33.67 0.43 -5.09 16 5 N -0.48 -7.50 7.36 30.45 0.22 -7.28 16 6 H 0.43 5.12 8.96 -182.61 -1.64 3.48 16 7 C 0.06 0.99 11.25 -17.22 -0.19 0.79 16 8 C -0.21 -3.64 4.86 -105.05 -0.51 -4.15 16 9 C 0.13 2.23 3.59 -4.98 -0.02 2.21 16 10 N -0.52 -10.55 4.39 -227.08 -1.00 -11.55 16 11 C 0.20 4.91 4.50 -4.97 -0.02 4.89 16 12 C -0.50 -13.83 8.37 -34.44 -0.29 -14.12 16 13 H 0.06 1.72 7.77 -52.49 -0.41 1.31 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 16 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 C 0.09 1.70 2.80 -65.68 -0.18 1.52 16 21 C -0.16 -2.63 5.57 -25.03 -0.14 -2.77 16 22 C -0.12 -1.62 6.80 -25.61 -0.17 -1.79 16 23 C -0.12 -1.57 6.80 -25.61 -0.17 -1.74 16 24 C -0.12 -1.76 6.33 -25.07 -0.16 -1.92 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.51 7.84 -51.93 -0.41 1.10 16 30 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 31 H 0.07 1.08 5.95 -51.93 -0.31 0.77 16 32 H 0.03 0.51 6.83 -51.93 -0.35 0.15 16 33 H 0.03 0.73 6.70 -51.93 -0.35 0.38 16 34 H -0.01 -0.14 7.38 -51.93 -0.38 -0.52 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.09 1.99 7.25 -51.93 -0.38 1.61 16 37 H 0.06 1.01 5.78 -51.93 -0.30 0.71 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.92 6.11 -51.93 -0.32 0.61 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -31.14 345.77 -10.34 -41.48 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.61 Total: 2.79 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.30 Total: -16.52 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.39 Total: -49.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.14 -10.34 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237655532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.881 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds