Wall clock time and date at job start Mon Mar 30 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47710 * 2 1 4 4 N 1.30838 * 125.90056 * 275.22060 * 3 2 1 5 5 N 1.40078 * 108.20538 * 180.25537 * 4 3 2 6 6 H 0.97000 * 126.03816 * 179.70628 * 5 4 3 7 7 C 1.34949 * 107.92878 * 359.71815 * 5 4 3 8 8 C 1.35314 * 107.74370 * 0.02562 * 7 5 4 9 9 C 1.50697 * 126.04154 * 180.02562 * 8 7 5 10 10 N 1.46901 * 109.47060 * 254.84728 * 9 8 7 11 11 C 1.46907 * 110.99625 * 72.49077 * 10 9 8 12 12 C 1.50704 * 109.46755 * 195.66423 * 11 10 9 13 13 H 1.07992 * 120.00404 * 5.02309 * 12 11 10 14 14 C 1.37881 * 119.99563 * 185.03370 * 12 11 10 15 15 N 1.31515 * 120.00244 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99640 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46921 * 89.99561 * 16 14 12 18 18 H 1.48500 * 109.46954 * 209.99233 * 16 14 12 19 19 H 1.48490 * 109.47175 * 329.99791 * 16 14 12 20 20 C 1.46901 * 111.00146 * 196.43951 * 10 9 8 21 21 C 1.54957 * 110.92560 * 312.92976 * 20 10 9 22 22 C 1.54269 * 104.16091 * 156.29384 * 21 20 10 23 23 C 1.53881 * 106.63918 * 336.44510 * 22 21 20 24 24 C 1.54270 * 106.59651 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.47124 * 59.99794 * 1 2 3 26 26 H 1.09000 * 109.47519 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47392 * 300.00180 * 1 2 3 28 28 H 1.08998 * 109.47223 * 239.99534 * 2 1 3 29 29 H 1.09006 * 109.47124 * 120.00206 * 2 1 3 30 30 H 1.08001 * 126.12912 * 179.97438 * 7 5 4 31 31 H 1.09000 * 109.47683 * 134.85002 * 9 8 7 32 32 H 1.09000 * 109.47020 * 14.84560 * 9 8 7 33 33 H 1.09003 * 109.47123 * 315.65869 * 11 10 9 34 34 H 1.08993 * 109.47305 * 75.66295 * 11 10 9 35 35 H 0.96997 * 120.00052 * 180.02562 * 15 14 12 36 36 H 1.09004 * 110.66860 * 189.62300 * 20 10 9 37 37 H 1.09001 * 110.47702 * 37.64312 * 21 20 10 38 38 H 1.08998 * 110.53128 * 274.97570 * 21 20 10 39 39 H 1.09000 * 110.03633 * 217.13968 * 22 21 20 40 40 H 1.09000 * 110.03143 * 95.75397 * 22 21 20 41 41 H 1.08996 * 110.02855 * 119.25725 * 23 22 21 42 42 H 1.08997 * 110.03298 * 240.64276 * 23 22 21 43 43 H 1.09000 * 110.48519 * 142.28181 * 24 23 22 44 44 H 1.09000 * 110.48579 * 264.79695 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1973 2.1762 -1.0554 5 7 2.6844 3.4194 -0.6320 6 1 2.9009 4.1724 -1.2039 7 6 2.7994 3.3846 0.7122 8 6 2.3996 2.1608 1.1287 9 6 2.3614 1.6787 2.5559 10 7 3.4767 0.7517 2.7897 11 6 4.7568 1.4708 2.8414 12 6 5.8906 0.4889 2.6951 13 1 5.6816 -0.5515 2.4947 14 6 7.1950 0.9189 2.8174 15 7 7.4496 2.1859 3.0611 16 14 8.6005 -0.2983 2.6368 17 1 9.0175 -0.3652 1.2131 18 1 9.7483 0.1441 3.4686 19 1 8.1528 -1.6413 3.0851 20 6 3.2629 -0.0310 4.0143 21 6 2.8264 0.8835 5.1866 22 6 2.0779 -0.0645 6.1462 23 6 1.5857 -1.2509 5.2988 24 6 2.0516 -0.9827 3.8527 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.1487 4.1891 1.3424 31 1 1.4177 1.1656 2.7411 32 1 2.4499 2.5309 3.2298 33 1 4.7984 2.1973 2.0298 34 1 4.8448 1.9878 3.7968 35 1 8.3672 2.4885 3.1468 36 1 4.1615 -0.5902 4.2753 37 1 2.1602 1.6690 4.8298 38 1 3.6975 1.3153 5.6793 39 1 1.2289 0.4518 6.5944 40 1 2.7538 -0.4171 6.9253 41 1 2.0235 -2.1790 5.6660 42 1 0.4980 -1.3108 5.3363 43 1 2.3579 -1.9119 3.3722 44 1 1.2592 -0.5011 3.2798 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237655532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:35 Heat of formation + Delta-G solvation = 39.183763 kcal Electronic energy + Delta-G solvation = -22712.047822 eV Core-core repulsion = 19664.254461 eV Total energy + Delta-G solvation = -3047.793361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11625 -39.85860 -36.25742 -35.08403 -34.44663 -31.71943 -30.91309 -29.58896 -29.26901 -27.67215 -25.76317 -24.84631 -23.38902 -21.81448 -20.93783 -20.47082 -19.86521 -18.54597 -18.24081 -16.99165 -16.57350 -16.37213 -15.70161 -15.52262 -15.04959 -14.94397 -14.68949 -14.32710 -14.22869 -13.89774 -13.67917 -13.45441 -13.10609 -12.87815 -12.84393 -12.54364 -12.40644 -12.13109 -12.10114 -11.95811 -11.89150 -11.78845 -11.59559 -11.36950 -11.25033 -11.17991 -10.96964 -10.54267 -10.18907 -9.29825 -8.71763 -8.14346 -6.21877 1.04806 1.38724 1.39498 1.50261 1.88497 2.13287 2.42009 3.17484 3.48016 3.84126 3.92507 3.97555 4.03577 4.20576 4.36476 4.41778 4.56124 4.62597 4.66153 4.69387 4.70264 4.84572 4.86932 4.93589 4.93876 5.01614 5.10462 5.15119 5.21098 5.25949 5.31486 5.34489 5.37417 5.40374 5.46588 5.52657 5.58014 5.68074 5.75322 5.86598 6.20473 6.54434 6.58029 6.81820 6.88385 6.97316 7.46848 8.94881 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.007662 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.053264 B = 3653.590695 C = 5138.726793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.045 4.045 3 C 0.095 3.905 4 N -0.332 5.332 5 N -0.475 5.475 6 H 0.448 0.552 7 C 0.060 3.940 8 C -0.232 4.232 9 C 0.136 3.864 10 N -0.524 5.524 11 C 0.217 3.783 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.956 3.044 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.085 3.915 21 C -0.156 4.156 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.109 4.109 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.186 0.814 31 H 0.092 0.908 32 H 0.025 0.975 33 H 0.002 0.998 34 H -0.035 1.035 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 -2.148 0.333 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C -0.071 4.071 4 N -0.157 5.157 5 N -0.184 5.184 6 H 0.294 0.706 7 C -0.089 4.089 8 C -0.244 4.244 9 C 0.008 3.992 10 N -0.246 5.246 11 C 0.091 3.909 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.195 4.195 15 N -0.575 5.575 16 Si 0.782 3.218 17 H -0.205 1.205 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.024 4.024 21 C -0.195 4.195 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.147 4.147 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.203 0.797 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.020 0.980 34 H -0.017 1.017 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.048 -2.282 -1.304 15.275 hybrid contribution 1.831 1.060 1.129 2.398 sum -13.217 -1.222 -0.175 13.274 Atomic orbital electron populations 1.21623 0.92711 1.02866 1.01717 1.20033 0.97060 0.87820 1.03500 1.22466 0.97490 0.97357 0.89823 1.77083 1.22912 0.92280 1.23381 1.46066 1.53254 1.13335 1.05755 0.70625 1.22668 1.00083 1.00283 0.85821 1.20092 1.12970 0.94380 0.96972 1.20271 0.95043 0.94122 0.89798 1.62070 1.01834 1.25607 1.35094 1.19224 0.86259 0.92491 0.92931 1.21499 0.91298 0.95605 1.46561 0.92669 1.25767 1.01395 0.96849 0.95440 1.70068 1.20177 1.16092 1.51170 0.85583 0.78774 0.79587 0.77906 1.20513 1.20828 1.18919 1.22639 0.97852 0.94465 0.87470 1.22988 0.99189 0.99273 0.98100 1.22015 0.99569 0.96224 0.97409 1.22089 1.01403 0.97833 0.94049 1.22396 0.96463 0.98683 0.97187 0.93355 0.90127 0.92387 0.91340 0.89302 0.79736 0.89013 0.95677 0.97951 1.01724 0.93080 0.92351 0.91149 0.94822 0.90604 0.92425 0.91640 0.89883 0.91811 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.89 71.98 0.71 -2.15 16 2 C -0.04 -1.29 6.35 29.85 0.19 -1.10 16 3 C 0.10 3.30 6.47 43.10 0.28 3.57 16 4 N -0.33 -11.69 12.70 -47.38 -0.60 -12.29 16 5 N -0.48 -14.48 7.36 -57.59 -0.42 -14.90 16 6 H 0.45 10.28 8.96 -213.33 -1.91 8.37 16 7 C 0.06 1.94 11.25 83.54 0.94 2.89 16 8 C -0.23 -8.19 4.86 -20.14 -0.10 -8.29 16 9 C 0.14 4.70 3.59 85.56 0.31 5.00 16 10 N -0.52 -21.56 4.39 -872.35 -3.83 -25.39 16 11 C 0.22 11.34 4.50 85.56 0.39 11.72 16 12 C -0.51 -29.21 8.37 25.60 0.21 -28.99 16 13 H 0.06 3.15 7.77 -2.91 -0.02 3.13 16 14 C 0.00 0.16 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 16 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 20 C 0.08 3.11 2.80 46.23 0.13 3.24 16 21 C -0.16 -5.12 5.57 31.69 0.18 -4.95 16 22 C -0.11 -2.85 6.80 31.32 0.21 -2.63 16 23 C -0.12 -2.59 6.80 31.32 0.21 -2.38 16 24 C -0.11 -3.01 6.33 31.67 0.20 -2.81 16 25 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.68 7.84 -2.38 -0.02 2.66 16 30 H 0.19 5.21 8.06 -2.91 -0.02 5.19 16 31 H 0.09 2.72 5.95 -2.39 -0.01 2.70 16 32 H 0.03 0.89 6.83 -2.39 -0.02 0.87 16 33 H 0.00 0.14 6.70 -2.39 -0.02 0.12 16 34 H -0.03 -2.00 7.38 -2.39 -0.02 -2.02 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.06 2.54 7.25 -2.39 -0.02 2.53 16 37 H 0.07 2.19 5.78 -2.39 -0.01 2.17 16 38 H 0.03 1.28 7.93 -2.39 -0.02 1.26 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.95 6.11 -2.39 -0.01 1.93 16 Total: -1.00 -68.36 345.77 0.85 -67.51 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -0.93 Total: 20.11 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 4.32 Total: -26.25 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -4.57 Total: -108.78 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -68.36 0.85 -67.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237655532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.691 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds