Wall clock time and date at job start Mon Mar 30 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46982 * 2 1 4 4 C 1.35902 * 117.00059 * 180.02562 * 3 2 1 5 5 C 1.38761 * 120.05046 * 359.72479 * 4 3 2 6 6 C 1.38128 * 119.93686 * 179.74485 * 5 4 3 7 7 C 1.50698 * 119.96895 * 180.25444 * 6 5 4 8 8 N 1.46900 * 109.47006 * 264.64700 * 7 6 5 9 9 C 1.46902 * 110.99844 * 199.77900 * 8 7 6 10 10 C 1.52999 * 109.47242 * 75.75032 * 9 8 7 11 11 C 1.46902 * 111.00070 * 75.82329 * 8 7 6 12 12 C 1.50698 * 109.46933 * 189.99649 * 11 8 7 13 13 H 1.08003 * 120.00316 * 0.02562 * 12 11 8 14 14 C 1.37881 * 119.99668 * 179.97438 * 12 11 8 15 15 N 1.31517 * 119.99635 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00028 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46976 * 90.00246 * 16 14 12 18 18 H 1.48503 * 109.47028 * 209.99840 * 16 14 12 19 19 H 1.48498 * 109.47387 * 329.99910 * 16 14 12 20 20 C 1.38287 * 120.05901 * 0.50885 * 6 5 4 21 21 C 1.38250 * 120.10927 * 359.76546 * 20 6 5 22 22 C 1.38162 * 120.05694 * 359.97438 * 21 20 6 23 23 C 1.50695 * 120.02765 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.47380 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47187 * 299.99970 * 1 2 3 26 26 H 1.09000 * 109.47368 * 59.99585 * 1 2 3 27 27 H 1.09000 * 109.47094 * 119.99939 * 2 1 3 28 28 H 1.08996 * 109.47086 * 240.00189 * 2 1 3 29 29 H 1.07995 * 120.03294 * 359.97438 * 5 4 3 30 30 H 1.09004 * 109.47113 * 24.64613 * 7 6 5 31 31 H 1.09004 * 109.47428 * 144.64749 * 7 6 5 32 32 H 1.09007 * 109.47168 * 195.75139 * 9 8 7 33 33 H 1.09000 * 109.47085 * 315.74460 * 9 8 7 34 34 H 1.08994 * 109.47268 * 54.85966 * 10 9 8 35 35 H 1.08999 * 109.47150 * 174.86196 * 10 9 8 36 36 H 1.08999 * 109.46964 * 294.85746 * 10 9 8 37 37 H 1.08995 * 109.46906 * 309.99891 * 11 8 7 38 38 H 1.09004 * 109.46673 * 70.00395 * 11 8 7 39 39 H 0.96996 * 119.99821 * 180.02562 * 15 14 12 40 40 H 1.07992 * 119.94584 * 179.74591 * 20 6 5 41 41 H 1.07998 * 119.97118 * 179.97438 * 21 20 6 42 42 H 1.08999 * 109.47619 * 270.02070 * 23 22 21 43 43 H 1.08998 * 109.47460 * 30.02569 * 23 22 21 44 44 H 1.09009 * 109.47298 * 150.02647 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 0.0047 6 6 5.5689 0.6095 -0.0012 7 6 6.4886 -0.5843 -0.0013 8 7 6.8952 -0.8893 1.3770 9 6 8.1159 -1.7063 1.3972 10 6 9.3248 -0.8249 1.0770 11 6 5.8081 -1.5486 2.1129 12 6 6.1649 -1.6241 3.5751 13 1 7.1050 -1.2220 3.9230 14 6 5.2907 -2.2055 4.4689 15 7 5.6019 -2.2709 5.7450 16 14 3.6645 -2.9001 3.8672 17 1 3.8429 -4.3268 3.4956 18 1 2.6507 -2.7930 4.9470 19 1 3.2071 -2.1330 2.6809 20 6 6.0962 1.8879 -0.0017 21 6 5.2551 2.9850 -0.0012 22 6 3.8850 2.8067 -0.0007 23 6 2.9688 4.0031 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.7886 -0.5728 0.0096 30 1 5.9687 -1.4434 -0.4253 31 1 7.3720 -0.3623 -0.6000 32 1 8.2405 -2.1490 2.3854 33 1 8.0357 -2.4978 0.6520 34 1 9.3525 0.0184 1.7670 35 1 10.2387 -1.4098 1.1813 36 1 9.2446 -0.4555 0.0547 37 1 4.8884 -0.9762 1.9924 38 1 5.6633 -2.5557 1.7218 39 1 4.9872 -2.6802 6.3737 40 1 7.1668 2.0294 -0.0021 41 1 5.6693 3.9824 -0.0011 42 1 2.7485 4.2912 1.0283 43 1 3.4540 4.8329 -0.5135 44 1 2.0408 3.7506 -0.5128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238071523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:23 Heat of formation + Delta-G solvation = -21.333774 kcal Electronic energy + Delta-G solvation = -22166.756328 eV Core-core repulsion = 19084.045979 eV Total energy + Delta-G solvation = -3082.710349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09005 -37.88768 -36.60831 -33.13187 -32.49004 -31.59562 -30.21942 -29.44407 -28.61681 -26.29273 -24.19794 -23.51343 -22.14512 -21.50584 -20.72705 -19.75439 -17.40051 -16.85771 -16.01862 -15.86107 -15.28374 -14.96548 -14.50072 -14.32497 -13.81143 -13.64912 -13.49097 -13.41096 -12.76848 -12.66311 -12.58624 -12.42801 -12.26251 -12.14686 -11.69129 -11.56053 -11.52308 -11.19624 -11.14250 -10.97845 -10.75792 -10.62095 -10.54938 -10.30806 -9.99574 -9.82054 -9.23512 -8.58426 -8.40753 -7.76263 -7.39266 -6.05386 -4.01456 1.61346 1.78178 3.24537 3.31663 3.32860 3.35245 3.99707 4.40348 4.85472 4.93510 4.97635 5.03281 5.14148 5.26627 5.27851 5.31867 5.38162 5.45355 5.62829 5.70112 5.77173 5.80553 5.80559 5.84912 5.88612 5.91135 5.97796 6.01032 6.07818 6.12487 6.32397 6.42849 6.60334 6.68069 6.70280 6.75023 6.90366 6.97397 7.01790 7.10134 7.61891 7.65258 7.91923 8.06388 8.66340 9.04024 9.56748 11.07986 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.007208 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.983840 B = 3883.634556 C = 5427.943675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.316 6.316 4 C 0.125 3.875 5 C -0.192 4.192 6 C -0.026 4.026 7 C 0.086 3.914 8 N -0.520 5.520 9 C 0.054 3.946 10 C -0.143 4.143 11 C 0.160 3.840 12 C -0.505 4.505 13 H 0.081 0.919 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.872 3.128 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.269 1.269 20 C -0.130 4.130 21 C -0.087 4.087 22 C -0.127 4.127 23 C -0.099 4.099 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.121 0.879 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.018 0.982 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.032 0.968 38 H -0.020 1.020 39 H 0.263 0.737 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 6.793 -14.760 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.230 6.230 4 C 0.080 3.920 5 C -0.211 4.211 6 C -0.026 4.026 7 C -0.042 4.042 8 N -0.244 5.244 9 C -0.074 4.074 10 C -0.200 4.200 11 C 0.034 3.966 12 C -0.544 4.544 13 H 0.099 0.901 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.700 3.300 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.149 4.149 21 C -0.105 4.105 22 C -0.128 4.128 23 C -0.156 4.156 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.050 0.950 38 H -0.002 1.002 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.408 7.292 -14.337 16.678 hybrid contribution -1.023 -1.575 -0.437 1.929 sum -5.431 5.716 -14.774 16.747 Atomic orbital electron populations 1.21751 0.92937 1.02703 1.03227 1.22775 0.95634 0.82320 1.01689 1.85989 1.19236 1.28865 1.88946 1.18700 0.82002 0.93566 0.97754 1.21115 0.93981 0.97749 1.08266 1.19580 0.92682 0.95047 0.95324 1.21091 0.96884 0.93876 0.92316 1.61970 1.05466 1.46827 1.10090 1.22037 0.89677 0.93593 1.02101 1.21781 0.96996 1.00573 1.00691 1.20242 0.90485 0.91111 0.94780 1.21036 1.06150 1.37726 0.89448 0.90050 1.24880 0.97791 0.95822 0.94783 1.69888 1.36850 1.45229 1.01950 0.86907 0.84697 0.79638 0.78773 1.20383 1.21103 1.19381 1.20823 0.99686 0.91561 1.02802 1.20778 0.91691 0.98782 0.99299 1.19133 0.94251 0.92228 1.07179 1.20538 0.98413 0.94669 1.01986 0.90549 0.91518 0.91748 0.91755 0.92307 0.86068 0.95033 0.90632 0.88978 0.96370 0.91908 0.93231 0.93919 0.95000 1.00223 0.92712 0.86028 0.85812 0.91713 0.92125 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 2 C 0.05 0.70 5.46 37.16 0.20 0.90 16 3 O -0.32 -5.00 9.18 -19.43 -0.18 -5.18 16 4 C 0.12 2.11 6.66 -39.21 -0.26 1.84 16 5 C -0.19 -3.39 7.39 -39.43 -0.29 -3.68 16 6 C -0.03 -0.45 5.04 -104.65 -0.53 -0.98 16 7 C 0.09 1.51 4.94 -4.98 -0.02 1.49 16 8 N -0.52 -10.87 4.34 -237.51 -1.03 -11.90 16 9 C 0.05 1.02 5.51 -3.82 -0.02 1.00 16 10 C -0.14 -2.21 9.96 37.16 0.37 -1.84 16 11 C 0.16 3.92 3.61 -4.98 -0.02 3.90 16 12 C -0.51 -14.45 8.79 -34.44 -0.30 -14.75 16 13 H 0.08 2.53 7.56 -52.48 -0.40 2.13 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 16 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 20 C -0.13 -2.07 9.72 -39.56 -0.38 -2.45 16 21 C -0.09 -1.28 9.70 -39.60 -0.38 -1.66 16 22 C -0.13 -1.96 5.89 -104.48 -0.62 -2.57 16 23 C -0.10 -1.24 9.79 36.00 0.35 -0.88 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.99 7.65 -51.93 -0.40 0.60 16 28 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 29 H 0.12 2.11 6.22 -52.49 -0.33 1.79 16 30 H 0.03 0.54 7.90 -51.93 -0.41 0.13 16 31 H 0.08 1.15 6.54 -51.93 -0.34 0.81 16 32 H 0.09 2.00 6.58 -51.92 -0.34 1.65 16 33 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.59 6.89 -51.93 -0.36 0.23 16 37 H 0.03 0.81 5.37 -51.93 -0.28 0.53 16 38 H -0.02 -0.49 7.55 -51.93 -0.39 -0.88 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 44 H 0.06 0.80 7.53 -51.92 -0.39 0.41 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -31.45 350.73 -8.85 -40.30 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.41 Total: 0.46 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -1.62 Total: -18.98 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.26 Total: -38.88 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.18 Total: -5.18 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.45 -8.85 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238071523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.971 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds