Wall clock time and date at job start Mon Mar 30 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46982 * 2 1 4 4 C 1.35902 * 117.00059 * 180.02562 * 3 2 1 5 5 C 1.38761 * 120.05046 * 359.72479 * 4 3 2 6 6 C 1.38128 * 119.93686 * 179.74485 * 5 4 3 7 7 C 1.50698 * 119.96895 * 180.25444 * 6 5 4 8 8 N 1.46900 * 109.47006 * 264.64700 * 7 6 5 9 9 C 1.46902 * 110.99844 * 199.77900 * 8 7 6 10 10 C 1.52999 * 109.47242 * 75.75032 * 9 8 7 11 11 C 1.46902 * 111.00070 * 75.82329 * 8 7 6 12 12 C 1.50698 * 109.46933 * 189.99649 * 11 8 7 13 13 H 1.08003 * 120.00316 * 0.02562 * 12 11 8 14 14 C 1.37881 * 119.99668 * 179.97438 * 12 11 8 15 15 N 1.31517 * 119.99635 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00028 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46976 * 90.00246 * 16 14 12 18 18 H 1.48503 * 109.47028 * 209.99840 * 16 14 12 19 19 H 1.48498 * 109.47387 * 329.99910 * 16 14 12 20 20 C 1.38287 * 120.05901 * 0.50885 * 6 5 4 21 21 C 1.38250 * 120.10927 * 359.76546 * 20 6 5 22 22 C 1.38162 * 120.05694 * 359.97438 * 21 20 6 23 23 C 1.50695 * 120.02765 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.47380 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47187 * 299.99970 * 1 2 3 26 26 H 1.09000 * 109.47368 * 59.99585 * 1 2 3 27 27 H 1.09000 * 109.47094 * 119.99939 * 2 1 3 28 28 H 1.08996 * 109.47086 * 240.00189 * 2 1 3 29 29 H 1.07995 * 120.03294 * 359.97438 * 5 4 3 30 30 H 1.09004 * 109.47113 * 24.64613 * 7 6 5 31 31 H 1.09004 * 109.47428 * 144.64749 * 7 6 5 32 32 H 1.09007 * 109.47168 * 195.75139 * 9 8 7 33 33 H 1.09000 * 109.47085 * 315.74460 * 9 8 7 34 34 H 1.08994 * 109.47268 * 54.85966 * 10 9 8 35 35 H 1.08999 * 109.47150 * 174.86196 * 10 9 8 36 36 H 1.08999 * 109.46964 * 294.85746 * 10 9 8 37 37 H 1.08995 * 109.46906 * 309.99891 * 11 8 7 38 38 H 1.09004 * 109.46673 * 70.00395 * 11 8 7 39 39 H 0.96996 * 119.99821 * 180.02562 * 15 14 12 40 40 H 1.07992 * 119.94584 * 179.74591 * 20 6 5 41 41 H 1.07998 * 119.97118 * 179.97438 * 21 20 6 42 42 H 1.08999 * 109.47619 * 270.02070 * 23 22 21 43 43 H 1.08998 * 109.47460 * 30.02569 * 23 22 21 44 44 H 1.09009 * 109.47298 * 150.02647 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 0.0047 6 6 5.5689 0.6095 -0.0012 7 6 6.4886 -0.5843 -0.0013 8 7 6.8952 -0.8893 1.3770 9 6 8.1159 -1.7063 1.3972 10 6 9.3248 -0.8249 1.0770 11 6 5.8081 -1.5486 2.1129 12 6 6.1649 -1.6241 3.5751 13 1 7.1050 -1.2220 3.9230 14 6 5.2907 -2.2055 4.4689 15 7 5.6019 -2.2709 5.7450 16 14 3.6645 -2.9001 3.8672 17 1 3.8429 -4.3268 3.4956 18 1 2.6507 -2.7930 4.9470 19 1 3.2071 -2.1330 2.6809 20 6 6.0962 1.8879 -0.0017 21 6 5.2551 2.9850 -0.0012 22 6 3.8850 2.8067 -0.0007 23 6 2.9688 4.0031 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.7886 -0.5728 0.0096 30 1 5.9687 -1.4434 -0.4253 31 1 7.3720 -0.3623 -0.6000 32 1 8.2405 -2.1490 2.3854 33 1 8.0357 -2.4978 0.6520 34 1 9.3525 0.0184 1.7670 35 1 10.2387 -1.4098 1.1813 36 1 9.2446 -0.4555 0.0547 37 1 4.8884 -0.9762 1.9924 38 1 5.6633 -2.5557 1.7218 39 1 4.9872 -2.6802 6.3737 40 1 7.1668 2.0294 -0.0021 41 1 5.6693 3.9824 -0.0011 42 1 2.7485 4.2912 1.0283 43 1 3.4540 4.8329 -0.5135 44 1 2.0408 3.7506 -0.5128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238071523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:23 Heat of formation + Delta-G solvation = -40.147272 kcal Electronic energy + Delta-G solvation = -22167.572143 eV Core-core repulsion = 19084.045979 eV Total energy + Delta-G solvation = -3083.526163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28669 -39.24561 -38.00134 -34.84173 -34.16278 -32.60406 -31.77337 -30.62892 -30.19926 -27.82627 -25.42214 -24.71874 -23.94639 -22.68474 -22.00059 -21.30885 -19.05667 -18.57751 -17.16052 -17.10087 -16.70963 -16.47673 -16.11118 -15.96442 -15.26776 -14.86210 -14.73239 -14.65748 -14.47344 -14.20428 -13.71004 -13.60528 -13.44391 -13.32122 -13.07765 -12.88715 -12.78343 -12.58605 -12.55929 -12.42356 -12.18548 -12.09454 -11.91685 -11.74184 -11.65469 -11.50379 -11.29639 -10.81923 -9.64655 -9.04794 -8.96132 -8.31486 -6.33031 0.38171 0.55330 1.25584 1.28254 1.38156 2.25213 2.29032 2.73955 3.01830 3.38831 3.78990 3.85596 3.95117 4.05990 4.09561 4.21342 4.27035 4.29214 4.39137 4.50999 4.53250 4.59561 4.64494 4.73204 4.80781 4.84764 4.86674 4.87526 4.89494 4.97519 4.99622 5.06828 5.14564 5.27037 5.34210 5.41586 5.44869 5.54284 5.58669 5.73962 5.93046 5.99766 6.39451 6.45561 6.63459 6.72930 7.29604 8.85254 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.007208 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.983840 B = 3883.634556 C = 5427.943675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 O -0.322 6.322 4 C 0.107 3.893 5 C -0.210 4.210 6 C -0.048 4.048 7 C 0.090 3.910 8 N -0.533 5.533 9 C 0.052 3.948 10 C -0.132 4.132 11 C 0.174 3.826 12 C -0.510 4.510 13 H 0.040 0.960 14 C 0.010 3.990 15 N -0.946 5.946 16 Si 0.938 3.062 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.254 1.254 20 C -0.137 4.137 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.096 4.096 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.033 0.967 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.026 0.974 38 H -0.020 1.020 39 H 0.266 0.734 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 7.668 -17.023 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 O -0.237 6.237 4 C 0.062 3.938 5 C -0.229 4.229 6 C -0.048 4.048 7 C -0.037 4.037 8 N -0.258 5.258 9 C -0.075 4.075 10 C -0.189 4.189 11 C 0.047 3.953 12 C -0.549 4.549 13 H 0.058 0.942 14 C -0.188 4.188 15 N -0.587 5.587 16 Si 0.762 3.238 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.178 1.178 20 C -0.155 4.155 21 C -0.103 4.103 22 C -0.136 4.136 23 C -0.153 4.153 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.051 0.949 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.044 0.956 38 H -0.002 1.002 39 H 0.075 0.925 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.152 8.171 -16.624 19.226 hybrid contribution -0.706 -1.792 0.274 1.945 sum -5.858 6.379 -16.350 18.502 Atomic orbital electron populations 1.21774 0.90478 1.04124 1.03655 1.22963 0.97584 0.81470 1.01021 1.85986 1.18789 1.30009 1.88895 1.18989 0.82432 0.94147 0.98250 1.21184 0.94478 0.97860 1.09395 1.19703 0.92652 0.95749 0.96736 1.21142 0.98137 0.94100 0.90308 1.61888 1.04908 1.46652 1.12305 1.22049 0.90410 0.94641 1.00447 1.21687 0.96002 0.99601 1.01619 1.19918 0.91482 0.91222 0.92661 1.21255 1.04601 1.37036 0.91981 0.94190 1.25776 1.01919 0.96279 0.94798 1.70040 1.38567 1.46660 1.03427 0.85844 0.79665 0.79485 0.78791 1.18982 1.20551 1.17797 1.21092 1.00757 0.91334 1.02366 1.21175 0.91323 0.99998 0.97800 1.19608 0.95241 0.92687 1.06100 1.20576 0.98048 0.94268 1.02378 0.88631 0.91889 0.90482 0.94060 0.91360 0.86794 0.94905 0.87942 0.92845 0.94828 0.93395 0.91196 0.91445 0.95629 1.00238 0.92488 0.84526 0.82573 0.91630 0.89497 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 10.28 71.98 0.74 -2.05 16 2 C 0.04 1.19 5.46 71.98 0.39 1.58 16 3 O -0.32 -9.97 9.18 -92.45 -0.85 -10.82 16 4 C 0.11 3.53 6.66 22.51 0.15 3.68 16 5 C -0.21 -7.34 7.39 22.37 0.17 -7.18 16 6 C -0.05 -1.62 5.04 -19.88 -0.10 -1.72 16 7 C 0.09 3.04 4.94 85.56 0.42 3.46 16 8 N -0.53 -22.23 4.34 -905.35 -3.93 -26.16 16 9 C 0.05 1.97 5.51 86.30 0.48 2.44 16 10 C -0.13 -3.86 9.96 71.98 0.72 -3.14 16 11 C 0.17 8.62 3.61 85.56 0.31 8.93 16 12 C -0.51 -30.23 8.79 25.60 0.22 -30.00 16 13 H 0.04 2.63 7.56 -2.91 -0.02 2.61 16 14 C 0.01 0.57 5.47 84.66 0.46 1.03 16 15 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 16 Si 0.94 45.12 27.47 68.60 1.88 47.01 16 17 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 20 C -0.14 -4.09 9.72 22.28 0.22 -3.87 16 21 C -0.09 -2.28 9.70 22.25 0.22 -2.07 16 22 C -0.14 -3.93 5.89 -19.77 -0.12 -4.04 16 23 C -0.10 -2.16 9.79 71.23 0.70 -1.46 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.27 7.65 -2.39 -0.02 1.25 16 28 H 0.07 1.65 7.67 -2.39 -0.02 1.63 16 29 H 0.11 4.01 6.22 -2.91 -0.02 3.99 16 30 H 0.03 1.09 7.90 -2.39 -0.02 1.07 16 31 H 0.10 2.84 6.54 -2.38 -0.02 2.83 16 32 H 0.05 2.41 6.58 -2.38 -0.02 2.39 16 33 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.65 6.89 -2.39 -0.02 1.63 16 37 H 0.03 1.30 5.37 -2.39 -0.01 1.29 16 38 H -0.02 -0.98 7.55 -2.39 -0.02 -1.00 16 39 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.47 8.09 -2.39 -0.02 1.46 16 44 H 0.06 1.45 7.53 -2.38 -0.02 1.44 16 Total: -1.00 -70.20 350.73 3.27 -66.93 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.90 Total: 17.31 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 4.97 Total: -34.40 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -3.63 Total: -86.02 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.85 Total: -10.82 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.01 kcal Total: -70.20 3.27 -66.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238071523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.778 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds