Wall clock time and date at job start Mon Mar 30 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.46828 * 2 1 4 4 C 1.35908 * 116.99811 * 179.97438 * 3 2 1 5 5 C 1.38749 * 120.05438 * 0.02562 * 4 3 2 6 6 C 1.38120 * 119.94443 * 179.97438 * 5 4 3 7 7 C 1.38282 * 120.05547 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.94634 * 180.02562 * 7 6 5 9 9 C 1.38249 * 120.11433 * 0.02562 * 7 6 5 10 10 C 1.50696 * 119.97538 * 180.02562 * 9 7 6 11 11 N 1.46893 * 109.47532 * 79.99600 * 10 9 7 12 12 C 1.46908 * 111.00045 * 66.04748 * 11 10 9 13 13 C 1.52994 * 109.47216 * 63.29866 * 12 11 10 14 14 C 1.46900 * 111.00400 * 190.00031 * 11 10 9 15 15 C 1.50701 * 109.47546 * 169.61225 * 14 11 10 16 16 H 1.08002 * 119.99451 * 354.96812 * 15 14 11 17 17 C 1.37872 * 119.99948 * 174.97126 * 15 14 11 18 18 N 1.31505 * 120.00346 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99647 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47271 * 89.99676 * 19 17 15 21 21 H 1.48503 * 109.46592 * 209.99589 * 19 17 15 22 22 H 1.48498 * 109.46944 * 329.99433 * 19 17 15 23 23 C 1.38168 * 120.05300 * 359.76030 * 9 7 6 24 24 H 1.08998 * 109.47221 * 299.99837 * 1 2 3 25 25 H 1.08995 * 109.47230 * 59.99703 * 1 2 3 26 26 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46564 * 240.00532 * 2 1 3 28 28 H 1.08995 * 109.47230 * 120.00297 * 2 1 3 29 29 H 1.07996 * 120.02799 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.97419 * 179.97438 * 6 5 4 31 31 H 1.09008 * 109.47139 * 90.00597 * 8 7 6 32 32 H 1.09003 * 109.47515 * 209.99722 * 8 7 6 33 33 H 1.09000 * 109.47092 * 330.00505 * 8 7 6 34 34 H 1.08998 * 109.47217 * 199.99788 * 10 9 7 35 35 H 1.09000 * 109.46761 * 319.99338 * 10 9 7 36 36 H 1.09002 * 109.47016 * 183.30309 * 12 11 10 37 37 H 1.08996 * 109.46496 * 303.29795 * 12 11 10 38 38 H 1.08993 * 109.46960 * 180.65266 * 13 12 11 39 39 H 1.09002 * 109.47106 * 300.65376 * 13 12 11 40 40 H 1.09004 * 109.46906 * 60.64940 * 13 12 11 41 41 H 1.08997 * 109.47117 * 289.61233 * 14 11 10 42 42 H 1.09001 * 109.46831 * 49.60833 * 14 11 10 43 43 H 0.96999 * 120.00567 * 180.02562 * 18 17 15 44 44 H 1.07996 * 120.03001 * 180.25635 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0962 1.8878 0.0000 8 6 7.5902 2.0853 -0.0005 9 6 5.2552 2.9850 0.0001 10 6 5.8332 4.3767 -0.0011 11 7 6.2422 4.7360 -1.3654 12 6 5.0771 4.8409 -2.2540 13 6 4.1692 5.9745 -1.7730 14 6 7.0219 5.9810 -1.3706 15 6 7.6365 6.1832 -2.7317 16 1 7.5330 5.4207 -3.4895 17 6 8.3308 7.3416 -3.0094 18 7 8.4563 8.2702 -2.0868 19 14 9.0919 7.5925 -4.6969 20 1 8.1104 8.2616 -5.5881 21 1 10.3049 8.4399 -4.5716 22 1 9.4654 6.2754 -5.2722 23 6 3.8850 2.8067 -0.0044 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7886 -0.5727 -0.0003 30 1 6.2281 -0.2461 0.0009 31 1 7.9500 2.1328 -1.0284 32 1 7.8340 3.0154 0.5129 33 1 8.0672 1.2507 0.5133 34 1 5.0810 5.0829 0.3505 35 1 6.6999 4.4106 0.6590 36 1 5.4125 5.0501 -3.2698 37 1 4.5241 3.9017 -2.2402 38 1 3.2990 6.0447 -2.4254 39 1 3.8431 5.7709 -0.7530 40 1 4.7188 6.9155 -1.7977 41 1 6.3669 6.8209 -1.1394 42 1 7.8111 5.9186 -0.6213 43 1 8.9445 9.0853 -2.2822 44 1 3.2284 3.6641 -0.0086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238714316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:04 Heat of formation + Delta-G solvation = -19.577392 kcal Electronic energy + Delta-G solvation = -21869.456114 eV Core-core repulsion = 18786.821928 eV Total energy + Delta-G solvation = -3082.634187 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16550 -38.30841 -36.55656 -32.71701 -32.53215 -31.44467 -30.86390 -29.30679 -27.32465 -25.92470 -24.75491 -23.56892 -22.92613 -21.79011 -20.49996 -19.19564 -17.56476 -16.17735 -16.15878 -16.13523 -15.13301 -14.98387 -14.77308 -14.33682 -13.96546 -13.46125 -13.43027 -13.21206 -12.93899 -12.80542 -12.64052 -12.38496 -11.92154 -11.80507 -11.55441 -11.52084 -11.41990 -11.15698 -10.98234 -10.81056 -10.72447 -10.56616 -10.51290 -10.35062 -9.98226 -9.69059 -9.18161 -8.60018 -8.39867 -7.78900 -7.11838 -5.99603 -4.00193 1.54132 1.67213 3.20167 3.33514 3.39869 3.44311 3.93939 4.46199 4.72330 4.75494 4.96159 5.02215 5.05288 5.17536 5.25136 5.31883 5.36196 5.49309 5.55838 5.56602 5.72724 5.79782 5.87311 5.95006 5.98446 6.04347 6.10881 6.23139 6.27821 6.33547 6.47023 6.52716 6.59041 6.61268 6.76766 6.97877 7.02834 7.07207 7.35070 7.48771 7.54965 7.85085 8.13502 8.25016 8.59697 9.08273 9.63851 11.11000 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.003978 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.688779 B = 7036.243440 C = 7527.912270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.319 6.319 4 C 0.115 3.885 5 C -0.212 4.212 6 C -0.088 4.088 7 C -0.095 4.095 8 C -0.105 4.105 9 C -0.025 4.025 10 C 0.083 3.917 11 N -0.525 5.525 12 C 0.061 3.939 13 C -0.188 4.188 14 C 0.188 3.812 15 C -0.502 4.502 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.895 3.105 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.273 1.273 23 C -0.142 4.142 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.003 0.997 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.262 -15.764 5.713 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.234 6.234 4 C 0.071 3.929 5 C -0.231 4.231 6 C -0.106 4.106 7 C -0.096 4.096 8 C -0.162 4.162 9 C -0.025 4.025 10 C -0.044 4.044 11 N -0.248 5.248 12 C -0.068 4.068 13 C -0.247 4.247 14 C 0.063 3.937 15 C -0.540 4.540 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.723 3.277 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.161 4.161 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.021 0.979 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.009 -15.809 5.563 20.051 hybrid contribution -0.094 0.640 -0.615 0.892 sum -11.103 -15.169 4.948 19.438 Atomic orbital electron populations 1.21769 0.93033 1.02586 1.03503 1.22696 0.95597 0.82500 1.01137 1.86051 1.19497 1.28697 1.89152 1.18870 0.81810 0.94111 0.98128 1.21068 0.94373 0.97439 1.10258 1.20760 0.94038 0.96650 0.99148 1.19705 0.96530 0.92035 1.01334 1.20712 0.90685 1.01675 1.03093 1.19633 0.91517 0.95814 0.95573 1.21091 0.98973 0.90712 0.93649 1.62373 1.19928 1.37475 1.05025 1.21957 0.90372 0.95937 0.98491 1.22383 1.00067 1.02124 1.00112 1.19803 0.91899 0.84180 0.97791 1.21138 1.32660 1.02319 0.97921 0.91950 1.24964 0.96593 0.95957 0.97066 1.69950 1.42506 1.08164 1.33339 0.86546 0.78697 0.78104 0.84363 1.20826 1.21353 1.19801 1.20313 0.94741 0.94529 1.06562 0.91608 0.91533 0.90608 0.92273 0.92350 0.86208 0.86229 0.90414 0.91135 0.92995 0.94537 0.90166 0.90301 0.92852 0.93554 0.93756 0.91227 0.97877 0.95759 0.93016 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.53 5.46 37.16 0.20 0.74 16 3 O -0.32 -4.32 10.14 -19.45 -0.20 -4.52 16 4 C 0.12 1.68 6.69 -39.22 -0.26 1.42 16 5 C -0.21 -2.79 9.04 -39.44 -0.36 -3.14 16 6 C -0.09 -1.19 9.69 -39.61 -0.38 -1.57 16 7 C -0.10 -1.47 5.88 -104.60 -0.62 -2.08 16 8 C -0.11 -1.55 9.60 36.00 0.35 -1.20 16 9 C -0.02 -0.41 4.59 -104.65 -0.48 -0.89 16 10 C 0.08 1.52 4.29 -4.98 -0.02 1.50 16 11 N -0.52 -11.11 4.69 -237.52 -1.11 -12.22 16 12 C 0.06 1.22 5.63 -3.82 -0.02 1.19 16 13 C -0.19 -3.51 9.25 37.15 0.34 -3.17 16 14 C 0.19 4.77 4.50 -4.98 -0.02 4.74 16 15 C -0.50 -13.87 8.41 -34.44 -0.29 -14.16 16 16 H 0.06 1.73 7.33 -52.49 -0.38 1.35 16 17 C 0.06 1.55 5.46 -17.83 -0.10 1.45 16 18 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.14 -2.25 8.56 -39.43 -0.34 -2.59 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 28 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 29 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 32 H 0.07 1.09 6.12 -51.93 -0.32 0.78 16 33 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.04 0.66 5.96 -51.93 -0.31 0.35 16 35 H 0.08 1.45 6.19 -51.93 -0.32 1.12 16 36 H 0.08 1.71 6.97 -51.93 -0.36 1.35 16 37 H 0.05 1.00 6.44 -51.93 -0.33 0.67 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.77 6.01 -51.93 -0.31 0.46 16 40 H 0.07 1.49 6.32 -51.93 -0.33 1.16 16 41 H 0.00 0.09 6.01 -51.93 -0.31 -0.22 16 42 H 0.02 0.66 7.92 -51.93 -0.41 0.24 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.12 1.94 7.73 -52.49 -0.41 1.54 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -29.83 346.06 -9.01 -38.84 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.02 Total: 0.34 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.61 Total: -18.50 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.38 Total: -37.98 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.20 Total: -4.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.83 -9.01 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238714316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.258 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds