Wall clock time and date at job start Mon Mar 30 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.46828 * 2 1 4 4 C 1.35908 * 116.99811 * 179.97438 * 3 2 1 5 5 C 1.38749 * 120.05438 * 0.02562 * 4 3 2 6 6 C 1.38120 * 119.94443 * 179.97438 * 5 4 3 7 7 C 1.38282 * 120.05547 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.94634 * 180.02562 * 7 6 5 9 9 C 1.38249 * 120.11433 * 0.02562 * 7 6 5 10 10 C 1.50696 * 119.97538 * 180.02562 * 9 7 6 11 11 N 1.46893 * 109.47532 * 79.99600 * 10 9 7 12 12 C 1.46908 * 111.00045 * 66.04748 * 11 10 9 13 13 C 1.52994 * 109.47216 * 63.29866 * 12 11 10 14 14 C 1.46900 * 111.00400 * 190.00031 * 11 10 9 15 15 C 1.50701 * 109.47546 * 169.61225 * 14 11 10 16 16 H 1.08002 * 119.99451 * 354.96812 * 15 14 11 17 17 C 1.37872 * 119.99948 * 174.97126 * 15 14 11 18 18 N 1.31505 * 120.00346 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99647 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47271 * 89.99676 * 19 17 15 21 21 H 1.48503 * 109.46592 * 209.99589 * 19 17 15 22 22 H 1.48498 * 109.46944 * 329.99433 * 19 17 15 23 23 C 1.38168 * 120.05300 * 359.76030 * 9 7 6 24 24 H 1.08998 * 109.47221 * 299.99837 * 1 2 3 25 25 H 1.08995 * 109.47230 * 59.99703 * 1 2 3 26 26 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46564 * 240.00532 * 2 1 3 28 28 H 1.08995 * 109.47230 * 120.00297 * 2 1 3 29 29 H 1.07996 * 120.02799 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.97419 * 179.97438 * 6 5 4 31 31 H 1.09008 * 109.47139 * 90.00597 * 8 7 6 32 32 H 1.09003 * 109.47515 * 209.99722 * 8 7 6 33 33 H 1.09000 * 109.47092 * 330.00505 * 8 7 6 34 34 H 1.08998 * 109.47217 * 199.99788 * 10 9 7 35 35 H 1.09000 * 109.46761 * 319.99338 * 10 9 7 36 36 H 1.09002 * 109.47016 * 183.30309 * 12 11 10 37 37 H 1.08996 * 109.46496 * 303.29795 * 12 11 10 38 38 H 1.08993 * 109.46960 * 180.65266 * 13 12 11 39 39 H 1.09002 * 109.47106 * 300.65376 * 13 12 11 40 40 H 1.09004 * 109.46906 * 60.64940 * 13 12 11 41 41 H 1.08997 * 109.47117 * 289.61233 * 14 11 10 42 42 H 1.09001 * 109.46831 * 49.60833 * 14 11 10 43 43 H 0.96999 * 120.00567 * 180.02562 * 18 17 15 44 44 H 1.07996 * 120.03001 * 180.25635 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0962 1.8878 0.0000 8 6 7.5902 2.0853 -0.0005 9 6 5.2552 2.9850 0.0001 10 6 5.8332 4.3767 -0.0011 11 7 6.2422 4.7360 -1.3654 12 6 5.0771 4.8409 -2.2540 13 6 4.1692 5.9745 -1.7730 14 6 7.0219 5.9810 -1.3706 15 6 7.6365 6.1832 -2.7317 16 1 7.5330 5.4207 -3.4895 17 6 8.3308 7.3416 -3.0094 18 7 8.4563 8.2702 -2.0868 19 14 9.0919 7.5925 -4.6969 20 1 8.1104 8.2616 -5.5881 21 1 10.3049 8.4399 -4.5716 22 1 9.4654 6.2754 -5.2722 23 6 3.8850 2.8067 -0.0044 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7886 -0.5727 -0.0003 30 1 6.2281 -0.2461 0.0009 31 1 7.9500 2.1328 -1.0284 32 1 7.8340 3.0154 0.5129 33 1 8.0672 1.2507 0.5133 34 1 5.0810 5.0829 0.3505 35 1 6.6999 4.4106 0.6590 36 1 5.4125 5.0501 -3.2698 37 1 4.5241 3.9017 -2.2402 38 1 3.2990 6.0447 -2.4254 39 1 3.8431 5.7709 -0.7530 40 1 4.7188 6.9155 -1.7977 41 1 6.3669 6.8209 -1.1394 42 1 7.8111 5.9186 -0.6213 43 1 8.9445 9.0853 -2.2822 44 1 3.2284 3.6641 -0.0086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238714316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:04 Heat of formation + Delta-G solvation = -36.604920 kcal Electronic energy + Delta-G solvation = -21870.194483 eV Core-core repulsion = 18786.821928 eV Total energy + Delta-G solvation = -3083.372556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26222 -39.56006 -38.00794 -34.75843 -33.51262 -32.70578 -31.81122 -30.99336 -29.04623 -27.20817 -26.19962 -24.99487 -24.30129 -22.92189 -21.83214 -20.63360 -18.69408 -18.26253 -17.36527 -17.02246 -16.77587 -16.40949 -16.15816 -15.92917 -15.35295 -14.76051 -14.61320 -14.43850 -14.22489 -14.00116 -13.87053 -13.47305 -13.35843 -13.12814 -13.07866 -12.80225 -12.69160 -12.62435 -12.50624 -12.40709 -12.30763 -12.11252 -11.88970 -11.54161 -11.46190 -11.43794 -11.19926 -10.57416 -9.77192 -8.92162 -8.85775 -8.16079 -6.24890 0.39816 0.54280 1.41855 1.42501 1.54171 2.30444 2.42463 2.78414 3.16534 3.52226 3.84909 3.89040 4.09277 4.10719 4.16499 4.23792 4.31469 4.37375 4.41753 4.42470 4.48973 4.60930 4.71530 4.73676 4.85241 4.89932 4.93192 4.96535 5.00995 5.04582 5.16950 5.22548 5.24312 5.33116 5.37763 5.43352 5.48471 5.50935 5.70367 5.87668 5.91775 6.11432 6.39514 6.54954 6.67984 6.91711 7.44178 8.94291 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.003978 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.688779 B = 7036.243440 C = 7527.912270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.336 6.336 4 C 0.112 3.888 5 C -0.204 4.204 6 C -0.082 4.082 7 C -0.111 4.111 8 C -0.100 4.100 9 C -0.040 4.040 10 C 0.089 3.911 11 N -0.527 5.527 12 C 0.065 3.935 13 C -0.177 4.177 14 C 0.205 3.795 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.004 3.996 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.266 1.266 23 C -0.157 4.157 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.036 0.964 41 H -0.020 1.020 42 H 0.000 1.000 43 H 0.263 0.737 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.186 -18.397 5.178 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.251 6.251 4 C 0.067 3.933 5 C -0.223 4.223 6 C -0.100 4.100 7 C -0.112 4.112 8 C -0.157 4.157 9 C -0.041 4.041 10 C -0.038 4.038 11 N -0.250 5.250 12 C -0.063 4.063 13 C -0.236 4.236 14 C 0.079 3.921 15 C -0.553 4.553 16 H 0.077 0.923 17 C -0.194 4.194 18 N -0.575 5.575 19 Si 0.788 3.212 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.190 1.190 23 C -0.176 4.176 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.169 0.831 30 H 0.167 0.833 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.055 0.945 41 H -0.002 1.002 42 H 0.018 0.982 43 H 0.072 0.928 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.954 -18.463 5.031 22.563 hybrid contribution 0.092 1.350 -0.385 1.407 sum -11.862 -17.112 4.645 21.333 Atomic orbital electron populations 1.21807 0.91658 1.04157 1.03009 1.23053 0.96773 0.80834 1.02282 1.86047 1.18793 1.31359 1.88914 1.18950 0.82724 0.93983 0.97609 1.21418 0.94028 0.98458 1.08394 1.21079 0.94772 0.96573 0.97593 1.19860 0.96519 0.92742 1.02077 1.20648 0.90894 1.02052 1.02087 1.19421 0.92129 0.94769 0.97751 1.21022 0.98775 0.92309 0.91725 1.62252 1.20770 1.34901 1.07117 1.21902 0.90129 0.97136 0.97121 1.22254 1.00157 0.99815 1.01370 1.19435 0.91242 0.85290 0.96161 1.21403 1.32842 1.02386 0.98655 0.92331 1.25819 0.97006 0.95622 1.00967 1.70073 1.43305 1.08682 1.35438 0.85474 0.77864 0.78242 0.79596 1.20062 1.20847 1.19029 1.20293 0.94343 0.95384 1.07571 0.91976 0.92180 0.87982 0.91232 0.90920 0.83065 0.83269 0.92145 0.92856 0.90152 0.94795 0.90716 0.92295 0.91183 0.91211 0.92650 0.94450 1.00204 0.98232 0.92841 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.72 5.46 71.98 0.39 1.11 16 3 O -0.34 -8.41 10.14 -92.52 -0.94 -9.35 16 4 C 0.11 3.06 6.69 22.51 0.15 3.21 16 5 C -0.20 -4.68 9.04 22.36 0.20 -4.48 16 6 C -0.08 -1.98 9.69 22.25 0.22 -1.76 16 7 C -0.11 -3.30 5.88 -19.85 -0.12 -3.42 16 8 C -0.10 -2.91 9.60 71.24 0.68 -2.23 16 9 C -0.04 -1.32 4.59 -19.88 -0.09 -1.41 16 10 C 0.09 3.36 4.29 85.56 0.37 3.73 16 11 N -0.53 -23.09 4.69 -905.39 -4.25 -27.34 16 12 C 0.07 2.65 5.63 86.30 0.49 3.13 16 13 C -0.18 -6.72 9.25 71.98 0.67 -6.05 16 14 C 0.20 10.88 4.50 85.56 0.38 11.27 16 15 C -0.51 -29.25 8.41 25.60 0.22 -29.04 16 16 H 0.06 3.31 7.33 -2.91 -0.02 3.29 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.41 13.29 21.44 0.28 -56.12 16 19 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C -0.16 -4.86 8.56 22.37 0.19 -4.67 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 28 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.15 2.47 6.30 -2.91 -0.02 2.45 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 31 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.05 1.70 6.12 -2.39 -0.01 1.69 16 33 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 34 H 0.03 1.28 5.96 -2.39 -0.01 1.27 16 35 H 0.07 2.85 6.19 -2.39 -0.01 2.83 16 36 H 0.06 2.60 6.97 -2.39 -0.02 2.59 16 37 H 0.07 2.62 6.44 -2.39 -0.02 2.60 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 1.95 6.01 -2.39 -0.01 1.93 16 40 H 0.04 1.65 6.32 -2.38 -0.02 1.63 16 41 H -0.02 -1.13 6.01 -2.39 -0.01 -1.14 16 42 H 0.00 -0.02 7.92 -2.39 -0.02 -0.04 16 43 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.12 3.71 7.73 -2.91 -0.02 3.69 16 Total: -1.00 -65.42 346.06 3.05 -62.37 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.97 Total: 14.66 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 4.95 Total: -31.01 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -3.96 Total: -83.46 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.94 Total: -9.35 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -65.42 3.05 -62.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238714316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.761 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds