Wall clock time and date at job start Mon Mar 30 2020 02:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47087 * 2 1 4 4 C 1.46892 * 111.00087 * 299.32428 * 3 2 1 5 5 C 1.50704 * 109.47061 * 288.74604 * 4 3 2 6 6 H 1.08003 * 120.00113 * 1.48876 * 5 4 3 7 7 C 1.37878 * 120.00083 * 181.49382 * 5 4 3 8 8 N 1.31513 * 120.00333 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99861 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46778 * 90.00412 * 9 7 5 11 11 H 1.48496 * 109.46990 * 210.00451 * 9 7 5 12 12 H 1.48495 * 109.47217 * 330.00755 * 9 7 5 13 13 C 1.46897 * 110.99640 * 63.27786 * 3 2 1 14 14 C 1.50706 * 109.47248 * 66.04788 * 13 3 2 15 15 C 1.38173 * 120.02474 * 259.99690 * 14 13 3 16 16 C 1.38233 * 120.05384 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.94542 * 180.02562 * 16 15 14 18 18 C 1.38283 * 120.11442 * 0.02562 * 16 15 14 19 19 C 1.50706 * 119.97530 * 180.02562 * 18 16 15 20 20 C 1.38125 * 120.05600 * 0.27399 * 18 16 15 21 21 C 1.38707 * 120.03352 * 80.01722 * 14 13 3 22 22 O 1.35905 * 120.05239 * 359.95982 * 21 14 13 23 23 C 1.42897 * 116.99887 * 179.97438 * 22 21 14 24 24 H 1.09000 * 109.47206 * 182.41732 * 1 2 3 25 25 H 1.09004 * 109.46853 * 302.41364 * 1 2 3 26 26 H 1.09000 * 109.47257 * 62.41385 * 1 2 3 27 27 H 1.09001 * 109.46500 * 240.00221 * 2 1 3 28 28 H 1.09005 * 109.46952 * 120.00644 * 2 1 3 29 29 H 1.08997 * 109.47850 * 48.74611 * 4 3 2 30 30 H 1.09005 * 109.47346 * 168.75033 * 4 3 2 31 31 H 0.96993 * 120.00459 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47441 * 306.04646 * 13 3 2 33 33 H 1.09003 * 109.46945 * 186.04294 * 13 3 2 34 34 H 1.07999 * 119.97023 * 0.02562 * 15 14 13 35 35 H 1.08996 * 109.47376 * 269.98324 * 17 16 15 36 36 H 1.09005 * 109.46994 * 29.97759 * 17 16 15 37 37 H 1.08995 * 109.47661 * 149.97593 * 17 16 15 38 38 H 1.08996 * 109.47163 * 89.99603 * 19 18 16 39 39 H 1.09000 * 109.46786 * 330.00330 * 19 18 16 40 40 H 1.08996 * 109.47006 * 210.00159 * 19 18 16 41 41 H 1.08001 * 120.02833 * 179.72072 * 20 18 16 42 42 H 1.09005 * 109.47052 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47285 * 300.00034 * 23 22 21 44 44 H 1.09010 * 109.46938 * 59.99837 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5620 2.1052 -1.1956 5 6 2.2937 1.5853 -2.4061 6 1 3.0081 0.7820 -2.3016 7 6 2.0514 2.1350 -3.6471 8 7 2.6896 1.6810 -4.7036 9 14 0.8153 3.5239 -3.8280 10 1 1.5073 4.8272 -3.6608 11 1 0.1951 3.4621 -5.1759 12 1 -0.2388 3.3866 -2.7912 13 6 1.6137 2.0868 1.2250 14 6 2.3012 1.4635 2.4124 15 6 1.6208 0.5657 3.2126 16 6 2.2510 -0.0068 4.3016 17 6 1.5068 -0.9861 5.1723 18 6 3.5632 0.3175 4.5934 19 6 4.2474 -0.3090 5.7811 20 6 4.2458 1.2191 3.8002 21 6 3.6174 1.7907 2.7033 22 8 4.2889 2.6732 1.9175 23 6 5.6410 2.9636 2.2771 24 1 -0.3633 -1.0267 0.0433 25 1 -0.3633 0.5509 0.8676 26 1 -0.3634 0.4759 -0.9108 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8900 29 1 0.4907 1.9511 -1.3248 30 1 1.7644 3.1698 -1.0783 31 1 2.5188 2.0675 -5.5766 32 1 0.5336 2.0080 1.3479 33 1 1.8955 3.1373 1.1522 34 1 0.5961 0.3105 2.9865 35 1 1.0043 -0.4485 5.9763 36 1 0.7673 -1.5166 4.5724 37 1 2.2103 -1.7016 5.5979 38 1 4.7357 -1.2335 5.4732 39 1 3.5088 -0.5276 6.5522 40 1 4.9925 0.3811 6.1768 41 1 5.2692 1.4755 4.0312 42 1 6.0594 3.6796 1.5697 43 1 5.6671 3.3868 3.2812 44 1 6.2282 2.0454 2.2545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238762201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:26 Heat of formation + Delta-G solvation = -13.625050 kcal Electronic energy + Delta-G solvation = -22277.614480 eV Core-core repulsion = 19195.238406 eV Total energy + Delta-G solvation = -3082.376074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23079 -37.74811 -37.19214 -33.26979 -32.26082 -31.68112 -29.71597 -28.72065 -27.68167 -26.86712 -25.53499 -23.94256 -22.57830 -21.77744 -20.25176 -19.01716 -17.22467 -16.62995 -16.42774 -15.55596 -14.94009 -14.82710 -14.67219 -14.08076 -14.06381 -13.99489 -13.92271 -13.06012 -12.88037 -12.83359 -12.52783 -12.39278 -12.09870 -11.91152 -11.89118 -11.65002 -11.53324 -11.36952 -11.04435 -10.88543 -10.76503 -10.52862 -10.42546 -10.25113 -9.87329 -9.78128 -9.20099 -8.54588 -8.47497 -7.70609 -7.13599 -5.96694 -3.92016 1.47910 1.62783 3.33584 3.40577 3.42853 3.59077 3.84846 4.49116 4.78159 4.86224 5.00363 5.08876 5.20697 5.23775 5.26929 5.32683 5.36934 5.48557 5.50393 5.60287 5.66640 5.70014 5.75096 5.75720 5.82788 5.86662 5.95310 5.98970 6.11027 6.14878 6.33709 6.47370 6.51013 6.58346 6.67074 6.78106 6.89830 7.02915 7.04808 7.15724 7.69841 7.73986 8.04738 8.20318 8.77808 9.13947 9.65975 11.16898 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.004960 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.051325 B = 5643.851712 C = 6370.744273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.059 3.941 3 N -0.513 5.513 4 C 0.159 3.841 5 C -0.498 4.498 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.872 3.128 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.095 3.905 14 C -0.098 4.098 15 C -0.074 4.074 16 C -0.132 4.132 17 C -0.106 4.106 18 C -0.057 4.057 19 C -0.113 4.113 20 C -0.212 4.212 21 C 0.151 3.849 22 O -0.294 6.294 23 C 0.029 3.971 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.056 0.944 29 H -0.005 1.005 30 H 0.021 0.979 31 H 0.262 0.738 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.047 0.953 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -2.014 21.089 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.069 4.069 3 N -0.235 5.235 4 C 0.032 3.968 5 C -0.537 4.537 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.193 1.193 13 C -0.033 4.033 14 C -0.099 4.099 15 C -0.093 4.093 16 C -0.132 4.132 17 C -0.163 4.163 18 C -0.057 4.057 19 C -0.169 4.169 20 C -0.231 4.231 21 C 0.104 3.896 22 O -0.206 6.206 23 C -0.066 4.066 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.013 0.987 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.141 0.859 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.088 -1.876 20.685 20.799 hybrid contribution -1.216 0.791 -0.162 1.460 sum -0.128 -1.085 20.523 20.552 Atomic orbital electron populations 1.22416 0.99733 1.00969 1.01737 1.22002 0.91713 0.91386 1.01819 1.62171 1.59004 1.01586 1.00776 1.20239 0.94185 0.93766 0.88561 1.21031 1.23462 1.19796 0.89403 0.90284 1.24878 0.95933 0.96729 0.95856 1.69894 1.42632 1.42742 0.99094 0.86903 0.82342 0.83370 0.77379 1.20241 1.21357 1.19329 1.20899 0.95658 0.98123 0.88578 1.19244 0.92128 1.00165 0.98342 1.20740 0.99414 0.95319 0.93801 1.19523 0.94297 1.01240 0.98150 1.20696 0.99607 0.97369 0.98633 1.19414 0.93524 0.96332 0.96427 1.20794 1.00128 1.00493 0.95532 1.21015 1.00747 1.03228 0.98084 1.18784 0.91478 0.89982 0.89329 1.86264 1.25550 1.58031 1.50758 1.23006 0.81661 1.01075 1.00896 0.93217 0.93626 0.91704 0.90001 0.92524 0.98717 0.96133 0.92836 0.94837 0.90524 0.85909 0.91886 0.91888 0.91809 0.91267 0.91418 0.91929 0.85870 0.88354 0.93436 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.34 9.27 37.16 0.34 -2.99 16 2 C 0.06 1.18 5.68 -3.82 -0.02 1.16 16 3 N -0.51 -11.23 4.65 -237.51 -1.11 -12.33 16 4 C 0.16 3.95 3.63 -4.98 -0.02 3.94 16 5 C -0.50 -14.50 9.15 -34.44 -0.32 -14.81 16 6 H 0.08 2.52 7.65 -52.48 -0.40 2.12 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 9 Si 0.87 21.96 27.44 -169.99 -4.66 17.30 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.51 6.58 56.52 0.37 -6.13 16 13 C 0.10 1.78 4.56 -4.97 -0.02 1.76 16 14 C -0.10 -1.63 4.59 -104.47 -0.48 -2.11 16 15 C -0.07 -1.07 8.29 -39.61 -0.33 -1.40 16 16 C -0.13 -1.68 5.88 -104.61 -0.62 -2.30 16 17 C -0.11 -1.02 9.19 36.01 0.33 -0.69 16 18 C -0.06 -0.71 5.88 -104.64 -0.62 -1.32 16 19 C -0.11 -1.03 9.19 36.01 0.33 -0.70 16 20 C -0.21 -2.91 8.69 -39.44 -0.34 -3.25 16 21 C 0.15 2.47 6.66 -39.22 -0.26 2.21 16 22 O -0.29 -5.04 9.73 -19.44 -0.19 -5.23 16 23 C 0.03 0.36 9.81 101.05 0.99 1.35 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.73 6.01 -51.93 -0.31 0.42 16 26 H 0.06 1.28 6.32 -51.93 -0.33 0.95 16 27 H 0.08 1.83 7.18 -51.93 -0.37 1.45 16 28 H 0.06 1.05 6.46 -51.93 -0.34 0.71 16 29 H 0.00 -0.12 5.01 -51.93 -0.26 -0.38 16 30 H 0.02 0.52 7.17 -51.93 -0.37 0.15 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.03 0.59 5.92 -51.93 -0.31 0.28 16 33 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 34 H 0.12 1.62 7.80 -52.49 -0.41 1.21 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.06 0.54 6.69 -51.93 -0.35 0.19 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.53 6.69 -51.93 -0.35 0.18 16 40 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 41 H 0.12 1.42 6.30 -52.49 -0.33 1.09 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.47 7.65 -51.93 -0.40 0.08 16 44 H 0.05 0.60 7.67 -51.92 -0.40 0.20 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -32.46 341.69 -8.16 -40.63 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.01 Total: -0.78 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.12 Total: -17.30 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.33 Total: -39.76 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.19 Total: -5.23 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.66 Total: 17.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.46 -8.16 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238762201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.004 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds