Wall clock time and date at job start Mon Mar 30 2020 02:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47087 * 2 1 4 4 C 1.46892 * 111.00087 * 299.32428 * 3 2 1 5 5 C 1.50704 * 109.47061 * 288.74604 * 4 3 2 6 6 H 1.08003 * 120.00113 * 1.48876 * 5 4 3 7 7 C 1.37878 * 120.00083 * 181.49382 * 5 4 3 8 8 N 1.31513 * 120.00333 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99861 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46778 * 90.00412 * 9 7 5 11 11 H 1.48496 * 109.46990 * 210.00451 * 9 7 5 12 12 H 1.48495 * 109.47217 * 330.00755 * 9 7 5 13 13 C 1.46897 * 110.99640 * 63.27786 * 3 2 1 14 14 C 1.50706 * 109.47248 * 66.04788 * 13 3 2 15 15 C 1.38173 * 120.02474 * 259.99690 * 14 13 3 16 16 C 1.38233 * 120.05384 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.94542 * 180.02562 * 16 15 14 18 18 C 1.38283 * 120.11442 * 0.02562 * 16 15 14 19 19 C 1.50706 * 119.97530 * 180.02562 * 18 16 15 20 20 C 1.38125 * 120.05600 * 0.27399 * 18 16 15 21 21 C 1.38707 * 120.03352 * 80.01722 * 14 13 3 22 22 O 1.35905 * 120.05239 * 359.95982 * 21 14 13 23 23 C 1.42897 * 116.99887 * 179.97438 * 22 21 14 24 24 H 1.09000 * 109.47206 * 182.41732 * 1 2 3 25 25 H 1.09004 * 109.46853 * 302.41364 * 1 2 3 26 26 H 1.09000 * 109.47257 * 62.41385 * 1 2 3 27 27 H 1.09001 * 109.46500 * 240.00221 * 2 1 3 28 28 H 1.09005 * 109.46952 * 120.00644 * 2 1 3 29 29 H 1.08997 * 109.47850 * 48.74611 * 4 3 2 30 30 H 1.09005 * 109.47346 * 168.75033 * 4 3 2 31 31 H 0.96993 * 120.00459 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47441 * 306.04646 * 13 3 2 33 33 H 1.09003 * 109.46945 * 186.04294 * 13 3 2 34 34 H 1.07999 * 119.97023 * 0.02562 * 15 14 13 35 35 H 1.08996 * 109.47376 * 269.98324 * 17 16 15 36 36 H 1.09005 * 109.46994 * 29.97759 * 17 16 15 37 37 H 1.08995 * 109.47661 * 149.97593 * 17 16 15 38 38 H 1.08996 * 109.47163 * 89.99603 * 19 18 16 39 39 H 1.09000 * 109.46786 * 330.00330 * 19 18 16 40 40 H 1.08996 * 109.47006 * 210.00159 * 19 18 16 41 41 H 1.08001 * 120.02833 * 179.72072 * 20 18 16 42 42 H 1.09005 * 109.47052 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47285 * 300.00034 * 23 22 21 44 44 H 1.09010 * 109.46938 * 59.99837 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5620 2.1052 -1.1956 5 6 2.2937 1.5853 -2.4061 6 1 3.0081 0.7820 -2.3016 7 6 2.0514 2.1350 -3.6471 8 7 2.6896 1.6810 -4.7036 9 14 0.8153 3.5239 -3.8280 10 1 1.5073 4.8272 -3.6608 11 1 0.1951 3.4621 -5.1759 12 1 -0.2388 3.3866 -2.7912 13 6 1.6137 2.0868 1.2250 14 6 2.3012 1.4635 2.4124 15 6 1.6208 0.5657 3.2126 16 6 2.2510 -0.0068 4.3016 17 6 1.5068 -0.9861 5.1723 18 6 3.5632 0.3175 4.5934 19 6 4.2474 -0.3090 5.7811 20 6 4.2458 1.2191 3.8002 21 6 3.6174 1.7907 2.7033 22 8 4.2889 2.6732 1.9175 23 6 5.6410 2.9636 2.2771 24 1 -0.3633 -1.0267 0.0433 25 1 -0.3633 0.5509 0.8676 26 1 -0.3634 0.4759 -0.9108 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8900 29 1 0.4907 1.9511 -1.3248 30 1 1.7644 3.1698 -1.0783 31 1 2.5188 2.0675 -5.5766 32 1 0.5336 2.0080 1.3479 33 1 1.8955 3.1373 1.1522 34 1 0.5961 0.3105 2.9865 35 1 1.0043 -0.4485 5.9763 36 1 0.7673 -1.5166 4.5724 37 1 2.2103 -1.7016 5.5979 38 1 4.7357 -1.2335 5.4732 39 1 3.5088 -0.5276 6.5522 40 1 4.9925 0.3811 6.1768 41 1 5.2692 1.4755 4.0312 42 1 6.0594 3.6796 1.5697 43 1 5.6671 3.3868 3.2812 44 1 6.2282 2.0454 2.2545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238762201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:25 Heat of formation + Delta-G solvation = -34.417393 kcal Electronic energy + Delta-G solvation = -22278.516104 eV Core-core repulsion = 19195.238406 eV Total energy + Delta-G solvation = -3083.277697 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33990 -39.04254 -38.56830 -34.90821 -33.99029 -32.62657 -31.32929 -30.22455 -28.67770 -28.18276 -26.73782 -25.23273 -24.39682 -22.83526 -21.61366 -20.52194 -18.88889 -18.27135 -17.57005 -16.84676 -16.50687 -16.31295 -16.09068 -15.82049 -15.04402 -14.94823 -14.87014 -14.59579 -14.45250 -14.19935 -13.54959 -13.50838 -13.35318 -13.30062 -13.01019 -12.86183 -12.73331 -12.61557 -12.57675 -12.39474 -12.25204 -12.02621 -11.90577 -11.54776 -11.53171 -11.43188 -11.33487 -10.75135 -9.61314 -8.87157 -8.74378 -8.26012 -6.27580 0.40324 0.56767 1.33906 1.35135 1.46058 2.35336 2.55064 2.75274 3.07253 3.47664 3.81644 3.88014 4.05714 4.21795 4.24382 4.27961 4.39179 4.40975 4.41272 4.48971 4.59513 4.65467 4.70919 4.75512 4.77882 4.82997 4.83905 4.87729 4.93037 4.97458 5.03220 5.09556 5.22473 5.24802 5.35857 5.42340 5.49776 5.54962 5.61714 5.77647 6.03021 6.04543 6.48827 6.62123 6.73235 6.77497 7.35109 8.91206 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.004960 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.051325 B = 5643.851712 C = 6370.744273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 N -0.533 5.533 4 C 0.171 3.829 5 C -0.506 4.506 6 H 0.032 0.968 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.251 1.251 13 C 0.104 3.896 14 C -0.126 4.126 15 C -0.078 4.078 16 C -0.134 4.134 17 C -0.105 4.105 18 C -0.057 4.057 19 C -0.112 4.112 20 C -0.216 4.216 21 C 0.126 3.874 22 O -0.331 6.331 23 C 0.023 3.977 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.001 0.999 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.142 0.858 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -2.063 24.043 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.064 4.064 3 N -0.256 5.256 4 C 0.044 3.956 5 C -0.544 4.544 6 H 0.050 0.950 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.175 1.175 13 C -0.023 4.023 14 C -0.127 4.127 15 C -0.097 4.097 16 C -0.134 4.134 17 C -0.161 4.161 18 C -0.057 4.057 19 C -0.168 4.168 20 C -0.234 4.234 21 C 0.080 3.920 22 O -0.245 6.245 23 C -0.072 4.072 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.018 0.982 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.160 0.840 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.121 -1.936 23.671 23.751 hybrid contribution -0.707 0.704 -0.990 1.405 sum -0.828 -1.232 22.682 22.730 Atomic orbital electron populations 1.22299 0.97460 1.02693 1.01358 1.21891 0.93556 0.90196 1.00709 1.62016 1.60082 1.02420 1.01079 1.19954 0.93685 0.93500 0.88426 1.21217 1.22900 1.18702 0.91628 0.95015 1.25802 0.98153 0.99676 0.95232 1.70051 1.44655 1.44633 0.99840 0.85747 0.79858 0.79549 0.77995 1.19276 1.20553 1.17457 1.20797 0.96559 0.97139 0.87853 1.19212 0.92864 1.02113 0.98554 1.20906 0.99897 0.94818 0.94055 1.19936 0.94632 1.01091 0.97760 1.20761 0.99844 0.97000 0.98532 1.19904 0.93606 0.95312 0.96923 1.20871 1.00698 1.00822 0.94391 1.21277 1.01659 1.03145 0.97356 1.19064 0.91767 0.90745 0.90387 1.86194 1.27541 1.58653 1.52093 1.23217 0.79889 1.01635 1.02420 0.90708 0.91578 0.94063 0.93688 0.90929 0.98166 0.96495 0.92530 0.93531 0.92056 0.84832 0.90378 0.91419 0.90288 0.90340 0.89702 0.90739 0.84049 0.87824 0.91087 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.11 9.27 71.98 0.67 -5.45 16 2 C 0.06 2.62 5.68 86.30 0.49 3.11 16 3 N -0.53 -23.91 4.65 -905.36 -4.21 -28.13 16 4 C 0.17 8.71 3.63 85.56 0.31 9.02 16 5 C -0.51 -30.73 9.15 25.60 0.23 -30.50 16 6 H 0.03 2.16 7.65 -2.91 -0.02 2.14 16 7 C 0.01 0.48 5.47 84.66 0.46 0.95 16 8 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 9 Si 0.95 45.71 27.44 68.60 1.88 47.59 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.25 -11.33 6.58 99.48 0.66 -10.68 16 13 C 0.10 3.89 4.56 85.56 0.39 4.28 16 14 C -0.13 -4.18 4.59 -19.77 -0.09 -4.27 16 15 C -0.08 -2.12 8.29 22.25 0.18 -1.93 16 16 C -0.13 -3.05 5.88 -19.85 -0.12 -3.17 16 17 C -0.10 -1.62 9.19 71.24 0.65 -0.96 16 18 C -0.06 -1.28 5.88 -19.88 -0.12 -1.39 16 19 C -0.11 -1.60 9.19 71.24 0.65 -0.95 16 20 C -0.22 -5.60 8.69 22.36 0.19 -5.41 16 21 C 0.13 4.13 6.66 22.50 0.15 4.28 16 22 O -0.33 -11.64 9.73 -92.48 -0.90 -12.54 16 23 C 0.02 0.56 9.81 113.37 1.11 1.67 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.07 1.97 6.01 -2.38 -0.01 1.95 16 26 H 0.04 1.59 6.32 -2.39 -0.02 1.58 16 27 H 0.04 2.12 7.18 -2.39 -0.02 2.10 16 28 H 0.07 2.68 6.46 -2.38 -0.02 2.66 16 29 H 0.00 0.04 5.01 -2.39 -0.01 0.03 16 30 H 0.02 0.87 7.17 -2.38 -0.02 0.85 16 31 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 32 H 0.05 1.58 5.92 -2.39 -0.01 1.57 16 33 H 0.06 2.43 7.58 -2.39 -0.02 2.41 16 34 H 0.13 3.20 7.80 -2.91 -0.02 3.18 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.00 8.08 -2.38 -0.02 0.98 16 37 H 0.08 0.99 6.69 -2.39 -0.02 0.98 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.95 6.69 -2.39 -0.02 0.94 16 40 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 41 H 0.14 2.99 6.30 -2.91 -0.02 2.98 16 42 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.07 1.34 7.65 -2.39 -0.02 1.32 16 44 H 0.06 1.29 7.67 -2.38 -0.02 1.27 16 Total: -1.00 -73.47 341.69 3.18 -70.29 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.93 Total: 14.52 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 5.18 Total: -30.74 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -3.91 Total: -89.13 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.90 Total: -12.54 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.59 kcal Total: -73.47 3.18 -70.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238762201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.877 kcal (2) G-P(sol) polarization free energy of solvation -73.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds