Wall clock time and date at job start Mon Mar 30 2020 02:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47397 * 2 1 4 4 C 1.35896 * 117.00470 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05485 * 0.02777 * 4 3 2 6 6 C 1.38113 * 119.94669 * 179.97438 * 5 4 3 7 7 C 1.50709 * 119.97613 * 179.97438 * 6 5 4 8 8 C 1.38294 * 120.05748 * 359.97438 * 6 5 4 9 9 C 1.38241 * 120.10587 * 359.74485 * 8 6 5 10 10 C 1.38164 * 120.05921 * 0.50819 * 9 8 6 11 11 C 1.50702 * 120.03118 * 179.76558 * 10 9 8 12 12 N 1.46894 * 109.47230 * 254.96273 * 11 10 9 13 13 C 1.46899 * 111.00059 * 71.56464 * 12 11 10 14 14 C 1.52997 * 109.47145 * 63.46536 * 13 12 11 15 15 C 1.46900 * 110.99868 * 195.51502 * 12 11 10 16 16 C 1.50701 * 109.47477 * 169.99662 * 15 12 11 17 17 H 1.08004 * 119.99609 * 0.02562 * 16 15 12 18 18 C 1.37868 * 120.00378 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00155 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00319 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47138 * 89.99431 * 20 18 16 22 22 H 1.48496 * 109.47396 * 209.99812 * 20 18 16 23 23 H 1.48501 * 109.46924 * 329.99923 * 20 18 16 24 24 H 1.09005 * 109.47505 * 59.99508 * 1 2 3 25 25 H 1.08998 * 109.47510 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46905 * 299.99632 * 1 2 3 27 27 H 1.09004 * 109.46905 * 240.00368 * 2 1 3 28 28 H 1.08999 * 109.47313 * 120.00117 * 2 1 3 29 29 H 1.08000 * 120.02580 * 359.95237 * 5 4 3 30 30 H 1.08993 * 109.46822 * 89.99653 * 7 6 5 31 31 H 1.08997 * 109.47061 * 210.00071 * 7 6 5 32 32 H 1.09002 * 109.46541 * 329.99973 * 7 6 5 33 33 H 1.07997 * 119.94819 * 180.02562 * 8 6 5 34 34 H 1.07999 * 119.96998 * 180.25776 * 9 8 6 35 35 H 1.09004 * 109.46673 * 134.95783 * 11 10 9 36 36 H 1.09000 * 109.46646 * 14.96426 * 11 10 9 37 37 H 1.08999 * 109.47039 * 183.46215 * 13 12 11 38 38 H 1.08998 * 109.46958 * 303.46323 * 13 12 11 39 39 H 1.09001 * 109.47157 * 300.19722 * 14 13 12 40 40 H 1.08991 * 109.47589 * 60.19619 * 14 13 12 41 41 H 1.08998 * 109.47060 * 180.20162 * 14 13 12 42 42 H 1.09000 * 109.47535 * 290.00431 * 15 12 11 43 43 H 1.09004 * 109.47201 * 50.00070 * 15 12 11 44 44 H 0.96998 * 120.00133 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5688 0.6094 0.0005 7 6 6.4886 -0.5844 0.0010 8 6 6.0962 1.8878 0.0000 9 6 5.2551 2.9849 -0.0058 10 6 3.8850 2.8066 -0.0005 11 6 2.9687 4.0031 -0.0015 12 7 2.3903 4.1780 1.3374 13 6 3.4010 4.6588 2.2888 14 6 3.8880 6.0440 1.8588 15 6 1.2332 5.0821 1.2969 16 6 0.5211 5.0465 2.6246 17 1 0.8914 4.4157 3.4192 18 6 -0.6024 5.8200 2.8253 19 7 -1.2235 5.7893 3.9842 20 14 -1.2425 6.9117 1.4513 21 1 -2.2167 6.1512 0.6281 22 1 -1.9108 8.1021 2.0355 23 1 -0.1087 7.3494 0.5980 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.7885 -0.5728 0.0008 30 1 6.7104 -0.8726 -1.0265 31 1 7.4153 -0.3288 0.5148 32 1 6.0053 -1.4152 0.5152 33 1 7.1668 2.0294 -0.0004 34 1 5.6694 3.9823 -0.0103 35 1 2.1689 3.8475 -0.7255 36 1 3.5352 4.8942 -0.2718 37 1 2.9620 4.7210 3.2846 38 1 4.2427 3.9666 2.3054 39 1 4.3238 5.9825 0.8616 40 1 3.0469 6.7370 1.8456 41 1 4.6405 6.3992 2.5628 42 1 1.5725 6.0978 1.0937 43 1 0.5501 4.7629 0.5097 44 1 -2.0141 6.3332 4.1252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250182551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:28 Heat of formation + Delta-G solvation = -14.736134 kcal Electronic energy + Delta-G solvation = -22260.614246 eV Core-core repulsion = 19178.189992 eV Total energy + Delta-G solvation = -3082.424254 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.11897 -37.67992 -37.00076 -33.20782 -32.27862 -31.43176 -29.76720 -29.38511 -28.67396 -26.34472 -24.07365 -23.71658 -22.57679 -21.50918 -20.70792 -19.13405 -17.36356 -16.66214 -16.00743 -15.87054 -15.36466 -14.78135 -14.68754 -14.12019 -14.06101 -13.71217 -13.52740 -13.04652 -12.87202 -12.76020 -12.47427 -12.36682 -12.25527 -11.96756 -11.58175 -11.48009 -11.44665 -11.37302 -11.07080 -10.85722 -10.69587 -10.50097 -10.43459 -10.27567 -9.85200 -9.78281 -9.18030 -8.55447 -8.48667 -7.79838 -7.13766 -5.97610 -3.93128 1.48880 1.68489 3.33008 3.40071 3.42492 3.50265 3.90788 4.48434 4.81077 4.91366 5.04775 5.08620 5.12495 5.17775 5.33225 5.36526 5.39185 5.42491 5.51451 5.64022 5.72168 5.74904 5.78638 5.88328 5.90318 5.98523 6.02126 6.09552 6.17758 6.29865 6.33942 6.47853 6.54420 6.61993 6.67252 6.76360 6.92755 7.04148 7.07581 7.17757 7.70693 7.76760 8.05057 8.21685 8.77011 9.12333 9.65119 11.15832 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.005454 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.386017 B = 5132.437231 C = 6119.399257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.290 6.290 4 C 0.160 3.840 5 C -0.217 4.217 6 C -0.058 4.058 7 C -0.111 4.111 8 C -0.165 4.165 9 C -0.076 4.076 10 C -0.102 4.102 11 C 0.095 3.905 12 N -0.512 5.512 13 C 0.061 3.939 14 C -0.189 4.189 15 C 0.160 3.840 16 C -0.499 4.499 17 H 0.079 0.921 18 C 0.067 3.933 19 N -0.904 5.904 20 Si 0.872 3.128 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.268 1.268 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.048 0.952 42 H -0.007 1.007 43 H 0.021 0.979 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.601 -10.970 -10.167 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.202 6.202 4 C 0.113 3.887 5 C -0.236 4.236 6 C -0.058 4.058 7 C -0.168 4.168 8 C -0.183 4.183 9 C -0.094 4.094 10 C -0.103 4.103 11 C -0.033 4.033 12 N -0.235 5.235 13 C -0.068 4.068 14 C -0.247 4.247 15 C 0.034 3.966 16 C -0.538 4.538 17 H 0.097 0.903 18 C -0.133 4.133 19 N -0.543 5.543 20 Si 0.700 3.300 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.193 1.193 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.011 0.989 43 H 0.039 0.961 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.080 -11.211 -9.904 19.228 hybrid contribution -0.106 1.179 -0.893 1.483 sum 11.974 -10.032 -10.798 18.990 Atomic orbital electron populations 1.21752 0.92755 1.02180 1.04253 1.22711 0.96107 0.82596 1.00450 1.86281 1.18367 1.28032 1.87555 1.18760 0.82615 0.93175 0.94128 1.21038 0.93643 0.97844 1.11046 1.19580 0.93276 0.94895 0.98052 1.20763 0.98445 0.95637 1.01972 1.20783 0.99256 0.91873 1.06381 1.20848 0.91907 0.98728 0.97947 1.19290 0.93630 0.92845 1.04559 1.20891 0.96115 0.92838 0.93491 1.62135 1.07115 1.49736 1.04515 1.21983 0.94001 0.92536 0.98261 1.22392 1.01413 1.00756 1.00187 1.20223 0.88368 0.89616 0.98440 1.21026 1.10003 1.25106 0.97620 0.90268 1.24870 0.96489 0.96685 0.95293 1.69897 1.20128 1.41250 1.23064 0.86909 0.79476 0.80706 0.82956 1.20238 1.21375 1.19302 0.91737 0.90982 0.90645 0.92928 0.92403 0.85977 0.91420 0.91614 0.91824 0.86502 0.85947 0.90720 0.94638 0.89827 0.92768 0.93760 0.91616 0.93242 0.98932 0.96051 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 37.15 0.38 -1.50 16 2 C 0.06 0.75 5.46 37.15 0.20 0.95 16 3 O -0.29 -5.04 9.46 -19.41 -0.18 -5.22 16 4 C 0.16 2.64 6.66 -39.22 -0.26 2.38 16 5 C -0.22 -3.01 8.69 -39.44 -0.34 -3.35 16 6 C -0.06 -0.72 5.88 -104.64 -0.62 -1.34 16 7 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 8 C -0.16 -2.09 9.70 -39.56 -0.38 -2.48 16 9 C -0.08 -1.08 9.09 -39.61 -0.36 -1.44 16 10 C -0.10 -1.70 4.66 -104.47 -0.49 -2.19 16 11 C 0.09 1.75 4.59 -4.98 -0.02 1.73 16 12 N -0.51 -11.14 4.65 -237.52 -1.10 -12.25 16 13 C 0.06 1.21 5.73 -3.83 -0.02 1.19 16 14 C -0.19 -3.37 9.27 37.16 0.34 -3.02 16 15 C 0.16 3.96 3.55 -4.98 -0.02 3.94 16 16 C -0.50 -14.38 9.06 -34.44 -0.31 -14.69 16 17 H 0.08 2.50 7.35 -52.48 -0.39 2.11 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 20 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 28 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 29 H 0.12 1.44 6.30 -52.49 -0.33 1.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.56 8.00 -52.49 -0.42 1.14 16 35 H 0.07 1.43 7.68 -51.93 -0.40 1.03 16 36 H 0.04 0.62 5.72 -51.93 -0.30 0.32 16 37 H 0.08 1.88 6.84 -51.93 -0.36 1.53 16 38 H 0.05 1.00 6.92 -51.93 -0.36 0.64 16 39 H 0.04 0.71 6.25 -51.93 -0.32 0.39 16 40 H 0.06 1.32 6.30 -51.93 -0.33 1.00 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H -0.01 -0.17 5.07 -51.93 -0.26 -0.43 16 43 H 0.02 0.54 7.29 -51.93 -0.38 0.16 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -31.86 346.69 -8.77 -40.63 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.18 Total: 0.25 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.63 Total: -18.60 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: -0.33 Total: -39.49 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.18 Total: -5.22 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.86 -8.77 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250182551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.898 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds