Wall clock time and date at job start Mon Mar 30 2020 02:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47397 * 2 1 4 4 C 1.35896 * 117.00470 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05485 * 0.02777 * 4 3 2 6 6 C 1.38113 * 119.94669 * 179.97438 * 5 4 3 7 7 C 1.50709 * 119.97613 * 179.97438 * 6 5 4 8 8 C 1.38294 * 120.05748 * 359.97438 * 6 5 4 9 9 C 1.38241 * 120.10587 * 359.74485 * 8 6 5 10 10 C 1.38164 * 120.05921 * 0.50819 * 9 8 6 11 11 C 1.50702 * 120.03118 * 179.76558 * 10 9 8 12 12 N 1.46894 * 109.47230 * 254.96273 * 11 10 9 13 13 C 1.46899 * 111.00059 * 71.56464 * 12 11 10 14 14 C 1.52997 * 109.47145 * 63.46536 * 13 12 11 15 15 C 1.46900 * 110.99868 * 195.51502 * 12 11 10 16 16 C 1.50701 * 109.47477 * 169.99662 * 15 12 11 17 17 H 1.08004 * 119.99609 * 0.02562 * 16 15 12 18 18 C 1.37868 * 120.00378 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00155 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00319 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47138 * 89.99431 * 20 18 16 22 22 H 1.48496 * 109.47396 * 209.99812 * 20 18 16 23 23 H 1.48501 * 109.46924 * 329.99923 * 20 18 16 24 24 H 1.09005 * 109.47505 * 59.99508 * 1 2 3 25 25 H 1.08998 * 109.47510 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46905 * 299.99632 * 1 2 3 27 27 H 1.09004 * 109.46905 * 240.00368 * 2 1 3 28 28 H 1.08999 * 109.47313 * 120.00117 * 2 1 3 29 29 H 1.08000 * 120.02580 * 359.95237 * 5 4 3 30 30 H 1.08993 * 109.46822 * 89.99653 * 7 6 5 31 31 H 1.08997 * 109.47061 * 210.00071 * 7 6 5 32 32 H 1.09002 * 109.46541 * 329.99973 * 7 6 5 33 33 H 1.07997 * 119.94819 * 180.02562 * 8 6 5 34 34 H 1.07999 * 119.96998 * 180.25776 * 9 8 6 35 35 H 1.09004 * 109.46673 * 134.95783 * 11 10 9 36 36 H 1.09000 * 109.46646 * 14.96426 * 11 10 9 37 37 H 1.08999 * 109.47039 * 183.46215 * 13 12 11 38 38 H 1.08998 * 109.46958 * 303.46323 * 13 12 11 39 39 H 1.09001 * 109.47157 * 300.19722 * 14 13 12 40 40 H 1.08991 * 109.47589 * 60.19619 * 14 13 12 41 41 H 1.08998 * 109.47060 * 180.20162 * 14 13 12 42 42 H 1.09000 * 109.47535 * 290.00431 * 15 12 11 43 43 H 1.09004 * 109.47201 * 50.00070 * 15 12 11 44 44 H 0.96998 * 120.00133 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5688 0.6094 0.0005 7 6 6.4886 -0.5844 0.0010 8 6 6.0962 1.8878 0.0000 9 6 5.2551 2.9849 -0.0058 10 6 3.8850 2.8066 -0.0005 11 6 2.9687 4.0031 -0.0015 12 7 2.3903 4.1780 1.3374 13 6 3.4010 4.6588 2.2888 14 6 3.8880 6.0440 1.8588 15 6 1.2332 5.0821 1.2969 16 6 0.5211 5.0465 2.6246 17 1 0.8914 4.4157 3.4192 18 6 -0.6024 5.8200 2.8253 19 7 -1.2235 5.7893 3.9842 20 14 -1.2425 6.9117 1.4513 21 1 -2.2167 6.1512 0.6281 22 1 -1.9108 8.1021 2.0355 23 1 -0.1087 7.3494 0.5980 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.7885 -0.5728 0.0008 30 1 6.7104 -0.8726 -1.0265 31 1 7.4153 -0.3288 0.5148 32 1 6.0053 -1.4152 0.5152 33 1 7.1668 2.0294 -0.0004 34 1 5.6694 3.9823 -0.0103 35 1 2.1689 3.8475 -0.7255 36 1 3.5352 4.8942 -0.2718 37 1 2.9620 4.7210 3.2846 38 1 4.2427 3.9666 2.3054 39 1 4.3238 5.9825 0.8616 40 1 3.0469 6.7370 1.8456 41 1 4.6405 6.3992 2.5628 42 1 1.5725 6.0978 1.0937 43 1 0.5501 4.7629 0.5097 44 1 -2.0141 6.3332 4.1252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250182551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:28 Heat of formation + Delta-G solvation = -34.600545 kcal Electronic energy + Delta-G solvation = -22261.475631 eV Core-core repulsion = 19178.189992 eV Total energy + Delta-G solvation = -3083.285639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24672 -39.06163 -38.32312 -34.85601 -33.95522 -32.47742 -31.31684 -30.55897 -30.16534 -27.84902 -25.41524 -24.81127 -24.38208 -22.56571 -21.95208 -20.77321 -18.89164 -18.42520 -17.24259 -17.02058 -16.65254 -16.41477 -16.21917 -15.96854 -15.11455 -14.77331 -14.66596 -14.47034 -14.34979 -14.20348 -13.79727 -13.43610 -13.33548 -13.29855 -13.17801 -12.86168 -12.71399 -12.62761 -12.40463 -12.34199 -12.24715 -12.06331 -11.87602 -11.52956 -11.52386 -11.46078 -11.32562 -10.75265 -9.61141 -8.93563 -8.80219 -8.25918 -6.27409 0.41934 0.61592 1.33602 1.34539 1.45426 2.35108 2.44909 2.80735 3.07560 3.48280 3.83254 3.90895 4.07813 4.14162 4.18943 4.24716 4.32386 4.32571 4.39468 4.46612 4.57113 4.64786 4.66342 4.74470 4.78921 4.81530 4.88640 4.94102 4.95292 4.97802 5.03549 5.10822 5.25410 5.27811 5.33164 5.42771 5.50061 5.57286 5.62992 5.72937 6.02582 6.04995 6.49070 6.65301 6.74963 6.78201 7.35452 8.91073 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.005454 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.386017 B = 5132.437231 C = 6119.399257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.326 6.326 4 C 0.136 3.864 5 C -0.223 4.223 6 C -0.055 4.055 7 C -0.110 4.110 8 C -0.164 4.164 9 C -0.076 4.076 10 C -0.132 4.132 11 C 0.103 3.897 12 N -0.531 5.531 13 C 0.066 3.934 14 C -0.179 4.179 15 C 0.173 3.827 16 C -0.505 4.505 17 H 0.033 0.967 18 C 0.009 3.991 19 N -0.950 5.950 20 Si 0.943 3.057 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.251 1.251 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.139 0.861 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.072 0.928 42 H -0.002 1.002 43 H 0.016 0.984 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.907 -11.555 -12.282 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.239 6.239 4 C 0.090 3.910 5 C -0.241 4.241 6 C -0.056 4.056 7 C -0.166 4.166 8 C -0.182 4.182 9 C -0.095 4.095 10 C -0.133 4.133 11 C -0.025 4.025 12 N -0.254 5.254 13 C -0.063 4.063 14 C -0.237 4.237 15 C 0.046 3.954 16 C -0.543 4.543 17 H 0.052 0.948 18 C -0.187 4.187 19 N -0.591 5.591 20 Si 0.767 3.233 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.175 1.175 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.015 0.985 43 H 0.034 0.966 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.413 -11.811 -12.028 22.179 hybrid contribution -0.731 1.209 -0.171 1.424 sum 13.681 -10.602 -12.200 21.175 Atomic orbital electron populations 1.21775 0.92643 1.03787 1.02427 1.22931 0.96234 0.81422 1.01775 1.86229 1.19361 1.30341 1.88008 1.19062 0.82640 0.94085 0.95229 1.21283 0.94193 0.97885 1.10756 1.20061 0.93242 0.96326 0.95938 1.20836 0.98223 0.94274 1.03311 1.21155 1.00594 0.91408 1.05091 1.21056 0.90967 1.00188 0.97250 1.19272 0.94417 0.92157 1.07480 1.20804 0.96134 0.94561 0.90958 1.61998 1.07292 1.49138 1.06945 1.21873 0.93756 0.94554 0.96076 1.22278 1.01011 0.98344 1.02106 1.19927 0.89373 0.90494 0.95586 1.21201 1.10538 1.24195 0.98373 0.94846 1.25772 0.96646 0.98314 0.98003 1.70052 1.20922 1.42638 1.25505 0.85778 0.79305 0.78626 0.79639 1.19314 1.20588 1.17520 0.92127 0.87663 0.93774 0.90447 0.91979 0.84323 0.89815 0.90163 0.91097 0.83570 0.84438 0.92221 0.93203 0.93634 0.90985 0.91478 0.94184 0.90938 0.98478 0.96631 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 10.28 71.98 0.74 -2.99 16 2 C 0.05 1.33 5.46 71.98 0.39 1.72 16 3 O -0.33 -11.57 9.46 -92.38 -0.87 -12.44 16 4 C 0.14 4.44 6.66 22.51 0.15 4.59 16 5 C -0.22 -5.78 8.69 22.36 0.19 -5.59 16 6 C -0.06 -1.22 5.88 -19.88 -0.12 -1.34 16 7 C -0.11 -1.57 10.01 71.24 0.71 -0.85 16 8 C -0.16 -3.63 9.70 22.28 0.22 -3.41 16 9 C -0.08 -1.99 9.09 22.25 0.20 -1.79 16 10 C -0.13 -4.31 4.66 -19.77 -0.09 -4.40 16 11 C 0.10 3.79 4.59 85.56 0.39 4.19 16 12 N -0.53 -23.63 4.65 -905.38 -4.21 -27.84 16 13 C 0.07 2.66 5.73 86.30 0.49 3.16 16 14 C -0.18 -6.18 9.27 71.98 0.67 -5.51 16 15 C 0.17 8.78 3.55 85.56 0.30 9.09 16 16 C -0.50 -30.43 9.06 25.60 0.23 -30.20 16 17 H 0.03 2.26 7.35 -2.91 -0.02 2.24 16 18 C 0.01 0.56 5.47 84.65 0.46 1.03 16 19 N -0.95 -61.01 13.96 21.44 0.30 -60.71 16 20 Si 0.94 45.66 27.47 68.60 1.88 47.55 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 23 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 24 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.08 1.59 7.66 -2.38 -0.02 1.57 16 28 H 0.06 1.52 7.66 -2.39 -0.02 1.50 16 29 H 0.14 2.99 6.30 -2.91 -0.02 2.97 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 32 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.14 3.07 8.00 -2.91 -0.02 3.05 16 35 H 0.06 2.33 7.68 -2.38 -0.02 2.31 16 36 H 0.05 1.66 5.72 -2.39 -0.01 1.64 16 37 H 0.05 2.16 6.84 -2.39 -0.02 2.15 16 38 H 0.07 2.64 6.92 -2.39 -0.02 2.62 16 39 H 0.07 2.00 6.25 -2.39 -0.01 1.99 16 40 H 0.04 1.58 6.30 -2.39 -0.02 1.57 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.00 -0.11 5.07 -2.39 -0.01 -0.13 16 43 H 0.02 0.81 7.29 -2.39 -0.02 0.79 16 44 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -72.50 346.69 2.96 -69.53 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.91 Total: 16.22 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 4.95 Total: -32.31 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -3.91 Total: -88.55 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.87 Total: -12.44 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.55 kcal Total: -72.50 2.96 -69.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250182551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.933 kcal (2) G-P(sol) polarization free energy of solvation -72.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds