Wall clock time and date at job start Mon Mar 30 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47368 * 266.45750 * 3 2 1 5 5 N 1.46893 * 109.47300 * 176.22497 * 4 3 2 6 6 C 1.46904 * 110.99821 * 65.30118 * 5 4 3 7 7 C 1.50695 * 109.47242 * 65.51048 * 6 5 4 8 8 H 1.08006 * 119.99841 * 3.23495 * 7 6 5 9 9 C 1.37881 * 120.00347 * 183.24382 * 7 6 5 10 10 N 1.31512 * 119.99369 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99942 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47456 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46915 * 119.99895 * 11 9 7 14 14 H 1.48505 * 109.46524 * 239.99552 * 11 9 7 15 15 C 1.46902 * 111.00247 * 189.25506 * 5 4 3 16 16 H 1.09005 * 108.83611 * 304.41798 * 15 5 4 17 17 C 1.52875 * 108.93396 * 185.76758 * 15 5 4 18 18 C 1.53058 * 109.16281 * 175.23138 * 17 15 5 19 19 C 1.52296 * 110.27595 * 93.62306 * 18 17 15 20 20 C 1.51486 * 113.38302 * 288.14723 * 19 18 17 21 21 N 1.46935 * 111.82722 * 352.75723 * 20 19 18 22 22 C 1.44458 * 113.46285 * 311.24586 * 21 20 19 23 23 C 1.51836 * 109.08493 * 328.71945 * 18 17 15 24 24 C 1.47119 * 110.01478 * 84.08151 * 21 20 19 25 25 H 1.09002 * 109.47067 * 146.45909 * 3 2 1 26 26 H 1.08999 * 109.47438 * 26.46064 * 3 2 1 27 27 H 1.08999 * 109.46378 * 56.22742 * 4 3 2 28 28 H 1.08998 * 109.46945 * 296.23226 * 4 3 2 29 29 H 1.08998 * 109.46868 * 185.50746 * 6 5 4 30 30 H 1.08997 * 109.47159 * 305.50300 * 6 5 4 31 31 H 0.97007 * 119.99600 * 180.02562 * 10 9 7 32 32 H 1.09003 * 109.52842 * 295.14971 * 17 15 5 33 33 H 1.08994 * 109.53660 * 55.30028 * 17 15 5 34 34 H 1.08997 * 108.14061 * 211.90736 * 18 17 15 35 35 H 1.09001 * 108.68828 * 167.12515 * 19 18 17 36 36 H 1.09002 * 108.67045 * 49.15112 * 19 18 17 37 37 H 1.09003 * 109.00558 * 232.15805 * 20 19 18 38 38 H 1.08991 * 109.00985 * 113.36540 * 20 19 18 39 39 H 1.09008 * 108.86454 * 182.65024 * 22 21 20 40 40 H 1.08993 * 108.86668 * 301.06429 * 22 21 20 41 41 H 1.08997 * 108.97417 * 205.69258 * 23 18 17 42 42 H 1.08999 * 108.97835 * 324.39262 * 23 18 17 43 43 H 1.09006 * 109.23719 * 144.61296 * 24 21 20 44 44 H 1.09001 * 109.20657 * 25.19947 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0900 1.4397 5 7 4.5842 -0.0003 1.4464 6 6 5.1860 1.1587 0.7735 7 6 4.8888 2.4078 1.5625 8 1 4.3558 2.3406 2.4995 9 6 5.2972 3.6363 1.0882 10 7 5.9465 3.7179 -0.0526 11 14 4.9294 5.1845 2.0666 12 1 4.1935 4.8243 3.3050 13 1 6.2035 5.8576 2.4254 14 1 4.0984 6.1024 1.2466 15 6 5.0970 -0.1387 2.8160 16 1 4.7264 0.6923 3.4162 17 6 6.6243 -0.0836 2.7817 18 6 7.1602 -0.1075 4.2152 19 6 7.4800 -1.5360 4.6354 20 6 6.2468 -2.3837 4.8709 21 7 5.0147 -1.5859 4.8052 22 6 5.0688 -0.3779 5.5956 23 6 6.1598 0.5755 5.1307 24 6 4.5816 -1.4426 3.4065 25 1 2.9710 0.8574 -0.5678 26 1 2.9718 -0.9192 -0.4579 27 1 2.7009 -0.7299 2.0244 28 1 2.8105 1.0405 1.8758 29 1 6.2650 1.0197 0.7061 30 1 4.7686 1.2541 -0.2288 31 1 6.2342 4.5823 -0.3861 32 1 7.0079 -0.9450 2.2349 33 1 6.9449 0.8337 2.2880 34 1 8.0827 0.4725 4.2424 35 1 8.0654 -1.5070 5.5544 36 1 8.0815 -2.0027 3.8553 37 1 6.3175 -2.8474 5.8548 38 1 6.2040 -3.1662 4.1134 39 1 4.1059 0.1289 5.5310 40 1 5.2551 -0.6453 6.6357 41 1 6.6858 0.9666 6.0015 42 1 5.6982 1.4051 4.5953 43 1 3.4923 -1.4499 3.3653 44 1 4.9686 -2.2786 2.8239 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254863617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:48 Heat of formation + Delta-G solvation = 38.656503 kcal Electronic energy + Delta-G solvation = -23206.642353 eV Core-core repulsion = 20158.826129 eV Total energy + Delta-G solvation = -3047.816224 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49464 -37.32829 -35.99123 -33.29838 -32.64253 -31.82180 -31.06136 -29.34119 -26.85190 -25.02214 -23.89885 -23.16799 -22.98961 -20.85011 -19.09354 -17.70057 -17.20988 -16.59023 -16.04869 -15.94222 -15.04751 -14.77665 -14.58796 -13.97629 -13.66133 -13.52089 -13.01196 -12.86692 -12.68850 -12.61900 -12.52624 -12.28952 -12.11052 -11.98317 -11.72385 -11.31738 -11.17464 -11.13108 -10.84924 -10.67169 -10.49397 -10.27268 -10.23872 -10.12097 -9.96688 -9.72920 -9.65994 -9.40859 -8.49602 -7.82652 -7.28332 -6.12199 -4.20809 3.09222 3.14924 3.19926 3.29669 3.31790 4.16068 4.33102 4.36854 4.85309 4.95581 5.10086 5.19217 5.21709 5.38044 5.41877 5.45500 5.52218 5.62294 5.64881 5.76147 5.79180 5.93033 5.98607 6.01688 6.08157 6.12925 6.24607 6.31753 6.35197 6.39936 6.47174 6.52922 6.56079 6.63837 6.89625 6.99489 7.11031 7.40786 7.46578 7.59565 7.80792 7.89057 7.96091 8.14081 8.19839 8.88959 9.46823 10.92423 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.007990 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.101058 B = 3503.600349 C = 4996.710010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.223 3.777 3 C -0.026 4.026 4 C 0.063 3.937 5 N -0.536 5.536 6 C 0.179 3.821 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.069 3.931 10 N -0.888 5.888 11 Si 0.881 3.119 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.066 3.934 16 H 0.056 0.944 17 C -0.107 4.107 18 C -0.081 4.081 19 C -0.140 4.140 20 C 0.068 3.932 21 N -0.558 5.558 22 C 0.081 3.919 23 C -0.153 4.153 24 C 0.071 3.929 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.262 0.738 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -9.755 7.312 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.094 4.094 3 C -0.067 4.067 4 C -0.067 4.067 5 N -0.260 5.260 6 C 0.054 3.946 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.134 4.134 10 N -0.526 5.526 11 Si 0.709 3.291 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.044 4.044 16 H 0.073 0.927 17 C -0.144 4.144 18 C -0.100 4.100 19 C -0.180 4.180 20 C -0.060 4.060 21 N -0.280 5.280 22 C -0.047 4.047 23 C -0.192 4.192 24 C -0.056 4.056 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.902 -10.289 7.126 12.549 hybrid contribution 0.789 2.447 0.541 2.627 sum 1.690 -7.843 7.667 11.098 Atomic orbital electron populations 1.81138 1.13330 1.10284 1.09446 1.29472 0.95505 0.92046 0.92389 1.19381 0.80157 1.06140 1.00998 1.21832 0.90600 1.00911 0.93337 1.62526 1.03544 1.43958 1.16004 1.19922 0.95697 0.84732 0.94296 1.21701 1.37239 0.92437 1.07154 0.92606 1.24901 0.94904 0.98848 0.94783 1.69931 1.38291 1.24947 1.19435 0.86708 0.78124 0.83865 0.80383 1.19875 1.20993 1.20983 1.21953 0.95022 0.96848 0.90560 0.92661 1.21767 0.94640 1.03388 0.94654 1.20560 0.98560 0.94970 0.95946 1.21672 0.98883 0.96286 1.01117 1.21775 0.87532 0.95320 1.01401 1.59739 1.31902 1.22191 1.14121 1.21133 0.98233 0.89029 0.96332 1.21935 0.97845 1.00091 0.99345 1.22147 0.99792 0.97838 0.85853 0.86501 0.87302 0.91808 0.93218 0.94494 0.94564 0.92837 0.92459 0.89252 0.91962 0.92865 0.92010 0.91872 0.91330 0.91411 0.91742 0.92873 0.90345 0.91399 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.35 18.54 42.15 0.78 -7.57 16 2 C 0.22 3.54 15.43 -20.76 -0.32 3.22 16 3 C -0.03 -0.38 5.52 -29.52 -0.16 -0.55 16 4 C 0.06 1.02 4.58 -3.83 -0.02 1.01 16 5 N -0.54 -9.46 4.58 -228.70 -1.05 -10.51 16 6 C 0.18 3.89 4.38 -4.98 -0.02 3.86 16 7 C -0.55 -13.21 7.23 -34.44 -0.25 -13.46 16 8 H 0.06 1.37 5.87 -52.48 -0.31 1.06 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -24.05 13.29 55.43 0.74 -23.32 16 11 Si 0.88 20.34 29.54 -169.99 -5.02 15.31 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.07 1.09 1.03 -68.22 -0.07 1.02 16 16 H 0.06 1.05 3.70 -51.93 -0.19 0.85 16 17 C -0.11 -1.78 4.43 -26.77 -0.12 -1.89 16 18 C -0.08 -1.16 2.79 -91.54 -0.26 -1.42 16 19 C -0.14 -1.69 5.33 -27.86 -0.15 -1.84 16 20 C 0.07 0.80 5.95 -4.57 -0.03 0.78 16 21 N -0.56 -7.52 4.62 -238.49 -1.10 -8.62 16 22 C 0.08 1.09 5.37 -5.56 -0.03 1.06 16 23 C -0.15 -2.21 5.16 -27.75 -0.14 -2.35 16 24 C 0.07 1.02 5.28 -4.15 -0.02 1.00 16 25 H 0.12 1.85 6.60 -51.93 -0.34 1.51 16 26 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 0.94 5.86 -51.93 -0.30 0.63 16 28 H 0.05 0.93 6.76 -51.93 -0.35 0.58 16 29 H 0.04 0.88 6.15 -51.93 -0.32 0.56 16 30 H 0.04 0.83 6.28 -51.93 -0.33 0.51 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.06 0.93 7.63 -51.93 -0.40 0.53 16 33 H 0.09 1.79 5.72 -51.93 -0.30 1.49 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.72 7.84 -51.93 -0.41 0.31 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.77 7.30 -51.93 -0.38 0.40 16 39 H 0.07 0.95 8.06 -51.92 -0.42 0.53 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.34 6.32 -51.93 -0.33 1.01 16 43 H 0.07 0.99 6.05 -51.93 -0.31 0.67 16 44 H 0.07 1.02 7.18 -51.93 -0.37 0.64 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -26.57 324.32 -9.18 -35.75 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.73 Total: 1.96 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -1.68 Total: -7.89 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.63 Total: -50.01 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.57 -9.18 -35.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254863617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.404 kcal (2) G-P(sol) polarization free energy of solvation -26.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds