Wall clock time and date at job start Mon Mar 30 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47368 * 266.45750 * 3 2 1 5 5 N 1.46893 * 109.47300 * 176.22497 * 4 3 2 6 6 C 1.46904 * 110.99821 * 65.30118 * 5 4 3 7 7 C 1.50695 * 109.47242 * 65.51048 * 6 5 4 8 8 H 1.08006 * 119.99841 * 3.23495 * 7 6 5 9 9 C 1.37881 * 120.00347 * 183.24382 * 7 6 5 10 10 N 1.31512 * 119.99369 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99942 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47456 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46915 * 119.99895 * 11 9 7 14 14 H 1.48505 * 109.46524 * 239.99552 * 11 9 7 15 15 C 1.46902 * 111.00247 * 189.25506 * 5 4 3 16 16 H 1.09005 * 108.83611 * 304.41798 * 15 5 4 17 17 C 1.52875 * 108.93396 * 185.76758 * 15 5 4 18 18 C 1.53058 * 109.16281 * 175.23138 * 17 15 5 19 19 C 1.52296 * 110.27595 * 93.62306 * 18 17 15 20 20 C 1.51486 * 113.38302 * 288.14723 * 19 18 17 21 21 N 1.46935 * 111.82722 * 352.75723 * 20 19 18 22 22 C 1.44458 * 113.46285 * 311.24586 * 21 20 19 23 23 C 1.51836 * 109.08493 * 328.71945 * 18 17 15 24 24 C 1.47119 * 110.01478 * 84.08151 * 21 20 19 25 25 H 1.09002 * 109.47067 * 146.45909 * 3 2 1 26 26 H 1.08999 * 109.47438 * 26.46064 * 3 2 1 27 27 H 1.08999 * 109.46378 * 56.22742 * 4 3 2 28 28 H 1.08998 * 109.46945 * 296.23226 * 4 3 2 29 29 H 1.08998 * 109.46868 * 185.50746 * 6 5 4 30 30 H 1.08997 * 109.47159 * 305.50300 * 6 5 4 31 31 H 0.97007 * 119.99600 * 180.02562 * 10 9 7 32 32 H 1.09003 * 109.52842 * 295.14971 * 17 15 5 33 33 H 1.08994 * 109.53660 * 55.30028 * 17 15 5 34 34 H 1.08997 * 108.14061 * 211.90736 * 18 17 15 35 35 H 1.09001 * 108.68828 * 167.12515 * 19 18 17 36 36 H 1.09002 * 108.67045 * 49.15112 * 19 18 17 37 37 H 1.09003 * 109.00558 * 232.15805 * 20 19 18 38 38 H 1.08991 * 109.00985 * 113.36540 * 20 19 18 39 39 H 1.09008 * 108.86454 * 182.65024 * 22 21 20 40 40 H 1.08993 * 108.86668 * 301.06429 * 22 21 20 41 41 H 1.08997 * 108.97417 * 205.69258 * 23 18 17 42 42 H 1.08999 * 108.97835 * 324.39262 * 23 18 17 43 43 H 1.09006 * 109.23719 * 144.61296 * 24 21 20 44 44 H 1.09001 * 109.20657 * 25.19947 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.0900 1.4397 5 7 4.5842 -0.0003 1.4464 6 6 5.1860 1.1587 0.7735 7 6 4.8888 2.4078 1.5625 8 1 4.3558 2.3406 2.4995 9 6 5.2972 3.6363 1.0882 10 7 5.9465 3.7179 -0.0526 11 14 4.9294 5.1845 2.0666 12 1 4.1935 4.8243 3.3050 13 1 6.2035 5.8576 2.4254 14 1 4.0984 6.1024 1.2466 15 6 5.0970 -0.1387 2.8160 16 1 4.7264 0.6923 3.4162 17 6 6.6243 -0.0836 2.7817 18 6 7.1602 -0.1075 4.2152 19 6 7.4800 -1.5360 4.6354 20 6 6.2468 -2.3837 4.8709 21 7 5.0147 -1.5859 4.8052 22 6 5.0688 -0.3779 5.5956 23 6 6.1598 0.5755 5.1307 24 6 4.5816 -1.4426 3.4065 25 1 2.9710 0.8574 -0.5678 26 1 2.9718 -0.9192 -0.4579 27 1 2.7009 -0.7299 2.0244 28 1 2.8105 1.0405 1.8758 29 1 6.2650 1.0197 0.7061 30 1 4.7686 1.2541 -0.2288 31 1 6.2342 4.5823 -0.3861 32 1 7.0079 -0.9450 2.2349 33 1 6.9449 0.8337 2.2880 34 1 8.0827 0.4725 4.2424 35 1 8.0654 -1.5070 5.5544 36 1 8.0815 -2.0027 3.8553 37 1 6.3175 -2.8474 5.8548 38 1 6.2040 -3.1662 4.1134 39 1 4.1059 0.1289 5.5310 40 1 5.2551 -0.6453 6.6357 41 1 6.6858 0.9666 6.0015 42 1 5.6982 1.4051 4.5953 43 1 3.4923 -1.4499 3.3653 44 1 4.9686 -2.2786 2.8239 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254863617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:47 Heat of formation + Delta-G solvation = 22.306866 kcal Electronic energy + Delta-G solvation = -23207.351327 eV Core-core repulsion = 20158.826129 eV Total energy + Delta-G solvation = -3048.525198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69426 -38.72427 -37.38247 -34.68067 -34.35397 -33.06355 -32.12844 -30.84036 -28.45000 -26.49773 -25.13901 -24.67476 -24.05272 -22.27011 -20.52143 -18.90768 -18.52176 -18.21769 -17.45183 -17.14480 -16.65733 -16.18426 -15.86649 -15.42563 -14.94992 -14.84735 -14.35576 -14.22782 -14.17232 -13.89803 -13.76075 -13.57425 -13.40879 -13.24309 -13.01377 -12.98186 -12.91088 -12.44499 -12.35229 -12.21588 -11.92107 -11.81033 -11.61506 -11.45920 -11.37454 -11.09987 -10.94640 -10.80993 -10.47592 -8.99055 -8.85116 -8.09085 -6.23942 1.32136 1.37680 1.44349 1.77844 1.84929 2.38698 2.93492 3.16844 3.19088 3.60683 3.79183 3.95560 4.02207 4.19904 4.26901 4.32792 4.36119 4.43620 4.45772 4.59307 4.67800 4.70804 4.77303 4.78937 4.99077 5.06846 5.07813 5.16535 5.17013 5.23593 5.25084 5.32845 5.33907 5.39509 5.41896 5.49878 5.54826 5.68062 5.87988 6.16404 6.30379 6.33206 6.52660 6.63025 6.65361 6.97431 7.45912 8.91757 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.007990 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.101058 B = 3503.600349 C = 4996.710010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.245 3.755 3 C -0.015 4.015 4 C 0.066 3.934 5 N -0.526 5.526 6 C 0.194 3.806 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.022 3.978 10 N -0.919 5.919 11 Si 0.931 3.069 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.071 3.929 16 H 0.031 0.969 17 C -0.101 4.101 18 C -0.080 4.080 19 C -0.134 4.134 20 C 0.066 3.934 21 N -0.558 5.558 22 C 0.084 3.916 23 C -0.149 4.149 24 C 0.080 3.920 25 H 0.104 0.896 26 H 0.141 0.859 27 H 0.087 0.913 28 H 0.022 0.978 29 H 0.015 0.985 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 -11.686 8.704 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.071 4.071 3 C -0.055 4.055 4 C -0.064 4.064 5 N -0.250 5.250 6 C 0.067 3.933 7 C -0.575 4.575 8 H 0.067 0.933 9 C -0.178 4.178 10 N -0.560 5.560 11 Si 0.758 3.242 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.039 4.039 16 H 0.049 0.951 17 C -0.138 4.138 18 C -0.099 4.099 19 C -0.173 4.173 20 C -0.062 4.062 21 N -0.279 5.279 22 C -0.045 4.045 23 C -0.189 4.189 24 C -0.048 4.048 25 H 0.122 0.878 26 H 0.159 0.841 27 H 0.105 0.895 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.933 -12.230 8.537 14.944 hybrid contribution 0.806 3.035 0.143 3.144 sum 1.739 -9.195 8.680 12.763 Atomic orbital electron populations 1.81164 1.14362 1.11588 1.10550 1.29535 0.95404 0.90892 0.91310 1.19336 0.79194 1.07174 0.99812 1.21853 0.89486 1.00393 0.94692 1.62494 1.04366 1.41427 1.16702 1.19592 0.94542 0.85288 0.93839 1.21919 1.35598 0.93359 1.06618 0.93336 1.25504 0.95336 1.01306 0.95614 1.70017 1.39854 1.25320 1.20761 0.85920 0.77770 0.81215 0.79269 1.19703 1.20949 1.21029 1.21989 0.94903 0.97640 0.89388 0.95128 1.21646 0.94800 1.01322 0.96071 1.20554 0.98005 0.96971 0.94393 1.21612 0.99451 0.94190 1.02051 1.21902 0.86286 0.95057 1.02932 1.59791 1.33030 1.22034 1.13078 1.21131 0.97195 0.88756 0.97400 1.21885 0.98206 0.99378 0.99394 1.22060 0.99795 0.96322 0.86627 0.87791 0.84127 0.89451 0.96008 0.96674 0.95650 0.92977 0.91913 0.93504 0.92652 0.91242 0.91402 0.89956 0.90351 0.92439 0.89565 0.91514 0.93863 0.91294 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.46 18.54 20.01 0.37 -17.09 16 2 C 0.25 7.47 15.43 89.44 1.38 8.85 16 3 C -0.02 -0.42 5.52 28.79 0.16 -0.26 16 4 C 0.07 2.07 4.58 86.31 0.40 2.46 16 5 N -0.53 -18.43 4.58 -877.47 -4.02 -22.45 16 6 C 0.19 8.63 4.38 85.55 0.38 9.01 16 7 C -0.54 -26.65 7.23 25.60 0.19 -26.46 16 8 H 0.05 2.46 5.87 -2.91 -0.02 2.44 16 9 C 0.02 1.16 5.46 84.66 0.46 1.62 16 10 N -0.92 -51.07 13.29 21.45 0.28 -50.79 16 11 Si 0.93 42.57 29.54 68.60 2.03 44.60 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 C 0.07 2.32 1.03 44.59 0.05 2.36 16 16 H 0.03 1.18 3.70 -2.38 -0.01 1.18 16 17 C -0.10 -3.36 4.43 30.57 0.14 -3.22 16 18 C -0.08 -2.21 2.79 -11.39 -0.03 -2.25 16 19 C -0.13 -2.84 5.33 29.87 0.16 -2.68 16 20 C 0.07 1.31 5.95 85.80 0.51 1.82 16 21 N -0.56 -13.48 4.62 -908.46 -4.20 -17.68 16 22 C 0.08 2.09 5.37 86.48 0.46 2.55 16 23 C -0.15 -4.20 5.16 29.93 0.15 -4.04 16 24 C 0.08 2.12 5.28 85.97 0.45 2.57 16 25 H 0.10 3.26 6.60 -2.39 -0.02 3.24 16 26 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.09 2.38 5.86 -2.39 -0.01 2.37 16 28 H 0.02 0.82 6.76 -2.39 -0.02 0.80 16 29 H 0.02 0.75 6.15 -2.39 -0.01 0.74 16 30 H 0.03 1.19 6.28 -2.39 -0.02 1.18 16 31 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 32 H 0.06 1.99 7.63 -2.39 -0.02 1.97 16 33 H 0.05 1.95 5.72 -2.39 -0.01 1.94 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.38 7.84 -2.39 -0.02 1.36 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.44 7.30 -2.39 -0.02 1.43 16 39 H 0.06 1.55 8.06 -2.38 -0.02 1.53 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.04 1.51 6.32 -2.39 -0.02 1.50 16 43 H 0.07 1.83 6.05 -2.38 -0.01 1.82 16 44 H 0.08 2.07 7.18 -2.39 -0.02 2.05 16 Total: -1.00 -57.94 324.32 0.32 -57.63 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.00 Total: 13.44 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.85 Total: -7.66 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -7.56 Total: -108.01 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -57.94 0.32 -57.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254863617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.936 kcal (2) G-P(sol) polarization free energy of solvation -57.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds