Wall clock time and date at job start Mon Mar 30 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46963 * 181.82750 * 3 2 1 5 5 N 1.46906 * 109.47204 * 179.08426 * 4 3 2 6 6 C 1.46907 * 110.99847 * 290.76722 * 5 4 3 7 7 C 1.50693 * 109.46896 * 297.17791 * 6 5 4 8 8 H 1.07997 * 120.00807 * 4.46028 * 7 6 5 9 9 C 1.37886 * 119.99514 * 184.46718 * 7 6 5 10 10 N 1.31517 * 119.99854 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00022 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46905 * 90.00540 * 11 9 7 13 13 H 1.48503 * 109.46819 * 210.00196 * 11 9 7 14 14 H 1.48495 * 109.47317 * 330.00216 * 11 9 7 15 15 C 1.46898 * 111.00138 * 166.81589 * 5 4 3 16 16 C 1.53099 * 109.52074 * 299.67497 * 15 5 4 17 17 C 1.53036 * 109.28773 * 182.43651 * 16 15 5 18 18 N 1.46852 * 109.51598 * 59.18723 * 17 16 15 19 19 C 1.46903 * 111.00037 * 174.16721 * 18 17 16 20 20 C 1.52994 * 117.49520 * 248.61974 * 19 18 17 21 21 C 1.52996 * 60.00277 * 252.51135 * 20 19 18 22 22 C 1.46852 * 111.19663 * 298.26370 * 18 17 16 23 23 C 1.53034 * 109.52079 * 61.73672 * 22 18 17 24 24 H 1.08997 * 109.47177 * 61.82725 * 3 2 1 25 25 H 1.09000 * 109.47265 * 301.82697 * 3 2 1 26 26 H 1.09002 * 109.47188 * 59.08893 * 4 3 2 27 27 H 1.09002 * 109.47435 * 299.07993 * 4 3 2 28 28 H 1.08999 * 109.46872 * 57.17970 * 6 5 4 29 29 H 1.08997 * 109.46608 * 177.17641 * 6 5 4 30 30 H 0.96993 * 120.00028 * 179.97438 * 10 9 7 31 31 H 1.08989 * 109.52516 * 59.86900 * 15 5 4 32 32 H 1.09002 * 109.49037 * 62.50234 * 16 15 5 33 33 H 1.08993 * 109.51048 * 302.38385 * 16 15 5 34 34 H 1.09006 * 109.46623 * 299.17727 * 17 16 15 35 35 H 1.08997 * 109.46558 * 179.19732 * 17 16 15 36 36 H 1.08991 * 115.55041 * 34.32958 * 19 18 17 37 37 H 1.09003 * 117.50602 * 0.02562 * 20 19 18 38 38 H 1.09003 * 117.49764 * 145.02191 * 20 19 18 39 39 H 1.08998 * 117.50384 * 252.51088 * 21 20 19 40 40 H 1.09003 * 117.49666 * 107.48654 * 21 20 19 41 41 H 1.08990 * 109.46134 * 181.75779 * 22 18 17 42 42 H 1.09002 * 109.45876 * 301.73653 * 22 18 17 43 43 H 1.09000 * 109.50091 * 60.76686 * 23 22 18 44 44 H 1.08999 * 109.50029 * 180.83645 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1172 1.4426 0.0460 5 7 4.5861 1.4427 0.0681 6 6 5.0934 0.9225 1.3449 7 6 4.6505 1.8259 2.4668 8 1 3.9929 2.6579 2.2627 9 6 5.0851 1.5903 3.7540 10 7 4.6990 2.3790 4.7331 11 14 6.2221 0.1509 4.1072 12 1 7.6341 0.5919 3.9764 13 1 5.9831 -0.3415 5.4877 14 1 5.9530 -0.9418 3.1384 15 6 5.1166 2.7858 -0.2011 16 6 4.6538 3.2509 -1.5844 17 6 5.2588 4.6241 -1.8846 18 7 6.7240 4.5342 -1.8438 19 6 7.3410 5.7999 -2.2625 20 6 8.0955 5.8116 -3.5935 21 6 8.8693 5.8707 -2.2750 22 6 7.1945 4.1349 -0.5112 23 6 6.6470 2.7472 -0.1701 24 1 2.9715 -0.4844 -0.9059 25 1 2.9715 -0.5411 0.8731 26 1 2.7404 1.9326 0.9438 27 1 2.7672 1.9800 -0.8354 28 1 4.7011 -0.0809 1.5100 29 1 6.1824 0.8866 1.3156 30 1 5.0044 2.2130 5.6386 31 1 4.7543 3.4794 0.5575 32 1 3.5662 3.3213 -1.5993 33 1 4.9831 2.5356 -2.3379 34 1 4.9181 5.3422 -1.1386 35 1 4.9426 4.9517 -2.8750 36 1 6.7976 6.7026 -1.9837 37 1 8.1338 4.8803 -4.1586 38 1 8.0485 6.7223 -4.1907 39 1 9.3314 6.8201 -2.0046 40 1 9.4169 4.9781 -1.9724 41 1 8.2841 4.1074 -0.5040 42 1 6.8445 4.8551 0.2283 43 1 7.0077 2.0239 -0.9014 44 1 6.9842 2.4575 0.8250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256081262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:02 Heat of formation + Delta-G solvation = 61.746813 kcal Electronic energy + Delta-G solvation = -22181.877990 eV Core-core repulsion = 19135.063036 eV Total energy + Delta-G solvation = -3046.814953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.39803 -37.70512 -36.31163 -35.06547 -32.57635 -31.58392 -30.64408 -29.55990 -27.03457 -24.02694 -23.37273 -22.64124 -21.72732 -20.93655 -19.97155 -19.01172 -17.35196 -16.78478 -16.53358 -15.44472 -14.85766 -14.66608 -14.41327 -14.40515 -14.02843 -13.80623 -13.49788 -13.09794 -12.79289 -12.56726 -12.37172 -12.19930 -12.06177 -11.86194 -11.56001 -11.43063 -11.27029 -11.09804 -10.82010 -10.70369 -10.56025 -10.42189 -10.29610 -10.18321 -10.07266 -9.85885 -9.70018 -9.42199 -8.64796 -8.15588 -7.32911 -6.16724 -4.17120 3.06435 3.12310 3.22076 3.31529 3.32752 3.73884 3.89542 4.26296 4.33431 4.88762 4.89582 4.93467 5.09977 5.16625 5.23803 5.24768 5.45744 5.54832 5.58296 5.58943 5.64576 5.74532 5.77366 5.86664 5.91634 5.99272 6.01323 6.11481 6.15011 6.22826 6.33870 6.37053 6.46368 6.59900 6.71296 6.81441 6.93120 7.02890 7.26652 7.30449 7.49333 7.86092 7.95934 7.97000 8.36720 8.85449 9.45717 10.96088 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013103 B = 0.005808 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.396683 B = 4819.983827 C = 6429.607888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.222 3.778 3 C -0.024 4.024 4 C 0.058 3.942 5 N -0.526 5.526 6 C 0.146 3.854 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.075 3.925 10 N -0.897 5.897 11 Si 0.874 3.126 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.262 1.262 15 C 0.096 3.904 16 C -0.112 4.112 17 C 0.063 3.937 18 N -0.509 5.509 19 C 0.007 3.993 20 C -0.165 4.165 21 C -0.177 4.177 22 C 0.060 3.940 23 C -0.105 4.105 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.489 3.321 -13.780 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.096 4.096 3 C -0.065 4.065 4 C -0.072 4.072 5 N -0.249 5.249 6 C 0.020 3.980 7 C -0.589 4.589 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.535 5.535 11 Si 0.701 3.299 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.187 1.187 15 C -0.013 4.013 16 C -0.150 4.150 17 C -0.065 4.065 18 N -0.234 5.234 19 C -0.103 4.103 20 C -0.203 4.203 21 C -0.214 4.214 22 C -0.068 4.068 23 C -0.143 4.143 24 H 0.126 0.874 25 H 0.131 0.869 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.103 2.655 -14.273 15.388 hybrid contribution 0.509 0.547 1.792 1.941 sum 5.612 3.202 -12.481 14.054 Atomic orbital electron populations 1.81144 1.13304 1.09279 1.10098 1.29398 0.95461 0.92522 0.92183 1.19321 0.80360 1.00974 1.05833 1.21897 0.90199 0.93409 1.01707 1.62434 1.05591 1.22290 1.34620 1.20311 0.96026 0.95818 0.85851 1.21618 1.31110 1.14321 0.91900 0.90793 1.24952 0.95768 0.95895 0.96240 1.69920 1.44883 1.38076 1.00598 0.86874 0.81545 0.83601 0.77879 1.20172 1.21413 1.18674 1.21388 0.94523 0.90635 0.94770 1.21742 0.99228 0.95782 0.98289 1.22036 0.86656 0.97473 1.00334 1.61786 1.06855 1.27436 1.27340 1.22396 0.93534 0.92485 1.01837 1.23035 1.03643 1.02951 0.90690 1.23035 0.93479 1.03052 1.01868 1.22103 0.99631 0.97088 0.87943 1.21605 0.95005 0.95353 1.02307 0.87392 0.86934 0.92317 0.91492 0.95184 0.94962 0.92660 0.93084 0.91812 0.90628 0.95067 0.91147 0.89677 0.88255 0.89213 0.88993 0.88283 0.91047 0.94797 0.91258 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.27 18.54 42.15 0.78 -7.48 16 2 C 0.22 3.47 15.43 -20.76 -0.32 3.15 16 3 C -0.02 -0.34 5.72 -29.52 -0.17 -0.51 16 4 C 0.06 0.93 4.60 -3.82 -0.02 0.91 16 5 N -0.53 -9.12 4.56 -227.95 -1.04 -10.16 16 6 C 0.15 3.02 3.58 -4.98 -0.02 3.00 16 7 C -0.55 -13.79 8.07 -34.44 -0.28 -14.07 16 8 H 0.07 2.05 6.13 -52.49 -0.32 1.73 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -26.03 13.96 55.43 0.77 -25.26 16 11 Si 0.87 19.99 27.38 -169.99 -4.65 15.33 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.26 -5.65 6.67 56.52 0.38 -5.27 16 15 C 0.10 1.60 1.64 -67.60 -0.11 1.49 16 16 C -0.11 -1.56 5.12 -26.66 -0.14 -1.70 16 17 C 0.06 0.83 5.43 -3.83 -0.02 0.80 16 18 N -0.51 -6.73 4.80 -226.69 -1.09 -7.82 16 19 C 0.01 0.07 5.30 -67.71 -0.36 -0.28 16 20 C -0.17 -1.61 10.46 -26.74 -0.28 -1.89 16 21 C -0.18 -1.77 9.70 -26.73 -0.26 -2.03 16 22 C 0.06 0.87 5.34 -3.83 -0.02 0.85 16 23 C -0.10 -1.70 4.93 -26.65 -0.13 -1.83 16 24 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.11 1.64 6.57 -51.93 -0.34 1.29 16 26 H 0.06 1.14 6.33 -51.93 -0.33 0.81 16 27 H 0.07 0.96 5.78 -51.93 -0.30 0.66 16 28 H 0.03 0.62 5.82 -51.93 -0.30 0.31 16 29 H 0.03 0.68 5.41 -51.93 -0.28 0.40 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.05 1.03 6.76 -51.94 -0.35 0.68 16 32 H 0.06 0.85 6.29 -51.93 -0.33 0.52 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 36 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.04 7.23 -51.93 -0.38 0.66 16 41 H 0.07 0.96 6.68 -51.93 -0.35 0.61 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.08 1.46 6.48 -51.93 -0.34 1.13 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -28.43 340.02 -9.31 -37.74 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.99 Total: 2.73 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.22 Total: -10.21 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.57 Total: -50.72 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.65 Total: 15.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.43 -9.31 -37.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256081262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.487 kcal (2) G-P(sol) polarization free energy of solvation -28.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds