Wall clock time and date at job start Mon Mar 30 2020 02:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46963 * 181.82750 * 3 2 1 5 5 N 1.46906 * 109.47204 * 179.08426 * 4 3 2 6 6 C 1.46907 * 110.99847 * 290.76722 * 5 4 3 7 7 C 1.50693 * 109.46896 * 297.17791 * 6 5 4 8 8 H 1.07997 * 120.00807 * 4.46028 * 7 6 5 9 9 C 1.37886 * 119.99514 * 184.46718 * 7 6 5 10 10 N 1.31517 * 119.99854 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00022 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46905 * 90.00540 * 11 9 7 13 13 H 1.48503 * 109.46819 * 210.00196 * 11 9 7 14 14 H 1.48495 * 109.47317 * 330.00216 * 11 9 7 15 15 C 1.46898 * 111.00138 * 166.81589 * 5 4 3 16 16 C 1.53099 * 109.52074 * 299.67497 * 15 5 4 17 17 C 1.53036 * 109.28773 * 182.43651 * 16 15 5 18 18 N 1.46852 * 109.51598 * 59.18723 * 17 16 15 19 19 C 1.46903 * 111.00037 * 174.16721 * 18 17 16 20 20 C 1.52994 * 117.49520 * 248.61974 * 19 18 17 21 21 C 1.52996 * 60.00277 * 252.51135 * 20 19 18 22 22 C 1.46852 * 111.19663 * 298.26370 * 18 17 16 23 23 C 1.53034 * 109.52079 * 61.73672 * 22 18 17 24 24 H 1.08997 * 109.47177 * 61.82725 * 3 2 1 25 25 H 1.09000 * 109.47265 * 301.82697 * 3 2 1 26 26 H 1.09002 * 109.47188 * 59.08893 * 4 3 2 27 27 H 1.09002 * 109.47435 * 299.07993 * 4 3 2 28 28 H 1.08999 * 109.46872 * 57.17970 * 6 5 4 29 29 H 1.08997 * 109.46608 * 177.17641 * 6 5 4 30 30 H 0.96993 * 120.00028 * 179.97438 * 10 9 7 31 31 H 1.08989 * 109.52516 * 59.86900 * 15 5 4 32 32 H 1.09002 * 109.49037 * 62.50234 * 16 15 5 33 33 H 1.08993 * 109.51048 * 302.38385 * 16 15 5 34 34 H 1.09006 * 109.46623 * 299.17727 * 17 16 15 35 35 H 1.08997 * 109.46558 * 179.19732 * 17 16 15 36 36 H 1.08991 * 115.55041 * 34.32958 * 19 18 17 37 37 H 1.09003 * 117.50602 * 0.02562 * 20 19 18 38 38 H 1.09003 * 117.49764 * 145.02191 * 20 19 18 39 39 H 1.08998 * 117.50384 * 252.51088 * 21 20 19 40 40 H 1.09003 * 117.49666 * 107.48654 * 21 20 19 41 41 H 1.08990 * 109.46134 * 181.75779 * 22 18 17 42 42 H 1.09002 * 109.45876 * 301.73653 * 22 18 17 43 43 H 1.09000 * 109.50091 * 60.76686 * 23 22 18 44 44 H 1.08999 * 109.50029 * 180.83645 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1172 1.4426 0.0460 5 7 4.5861 1.4427 0.0681 6 6 5.0934 0.9225 1.3449 7 6 4.6505 1.8259 2.4668 8 1 3.9929 2.6579 2.2627 9 6 5.0851 1.5903 3.7540 10 7 4.6990 2.3790 4.7331 11 14 6.2221 0.1509 4.1072 12 1 7.6341 0.5919 3.9764 13 1 5.9831 -0.3415 5.4877 14 1 5.9530 -0.9418 3.1384 15 6 5.1166 2.7858 -0.2011 16 6 4.6538 3.2509 -1.5844 17 6 5.2588 4.6241 -1.8846 18 7 6.7240 4.5342 -1.8438 19 6 7.3410 5.7999 -2.2625 20 6 8.0955 5.8116 -3.5935 21 6 8.8693 5.8707 -2.2750 22 6 7.1945 4.1349 -0.5112 23 6 6.6470 2.7472 -0.1701 24 1 2.9715 -0.4844 -0.9059 25 1 2.9715 -0.5411 0.8731 26 1 2.7404 1.9326 0.9438 27 1 2.7672 1.9800 -0.8354 28 1 4.7011 -0.0809 1.5100 29 1 6.1824 0.8866 1.3156 30 1 5.0044 2.2130 5.6386 31 1 4.7543 3.4794 0.5575 32 1 3.5662 3.3213 -1.5993 33 1 4.9831 2.5356 -2.3379 34 1 4.9181 5.3422 -1.1386 35 1 4.9426 4.9517 -2.8750 36 1 6.7976 6.7026 -1.9837 37 1 8.1338 4.8803 -4.1586 38 1 8.0485 6.7223 -4.1907 39 1 9.3314 6.8201 -2.0046 40 1 9.4169 4.9781 -1.9724 41 1 8.2841 4.1074 -0.5040 42 1 6.8445 4.8551 0.2283 43 1 7.0077 2.0239 -0.9014 44 1 6.9842 2.4575 0.8250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256081262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:01 Heat of formation + Delta-G solvation = 43.304475 kcal Electronic energy + Delta-G solvation = -22182.677709 eV Core-core repulsion = 19135.063036 eV Total energy + Delta-G solvation = -3047.614673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60676 -38.90758 -37.58606 -36.23310 -34.52180 -32.83118 -31.87654 -30.99440 -28.64378 -25.42789 -24.77110 -23.71935 -22.72100 -22.12381 -21.17036 -20.51080 -18.84475 -18.41099 -17.55188 -16.76740 -16.35756 -15.92632 -15.78667 -15.53047 -15.41240 -15.18779 -14.71076 -14.50637 -14.27440 -13.96639 -13.65699 -13.49572 -13.31239 -13.24563 -12.96292 -12.89737 -12.36683 -12.29890 -12.16421 -12.11478 -11.97259 -11.92454 -11.63179 -11.46595 -11.31553 -11.19306 -11.11257 -10.76999 -10.67905 -9.22714 -8.93048 -8.23639 -6.26947 1.41341 1.43578 1.53615 1.77723 1.85971 2.40048 2.81623 2.95097 3.00994 3.13861 3.55623 3.96695 3.99103 4.08255 4.14900 4.19273 4.29711 4.35769 4.41287 4.49054 4.56721 4.70310 4.72933 4.78675 4.79955 4.85583 4.91374 4.96920 5.06326 5.12246 5.16004 5.19527 5.22151 5.28333 5.29270 5.38915 5.39325 5.53532 5.67126 6.12609 6.18277 6.28403 6.41829 6.47708 6.64121 6.81513 7.39582 8.92850 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013103 B = 0.005808 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.396683 B = 4819.983827 C = 6429.607888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.243 3.757 3 C -0.014 4.014 4 C 0.059 3.941 5 N -0.510 5.510 6 C 0.152 3.848 7 C -0.536 4.536 8 H 0.031 0.969 9 C 0.010 3.990 10 N -0.954 5.954 11 Si 0.938 3.062 12 H -0.270 1.270 13 H -0.296 1.296 14 H -0.231 1.231 15 C 0.096 3.904 16 C -0.101 4.101 17 C 0.064 3.936 18 N -0.507 5.507 19 C -0.017 4.017 20 C -0.148 4.148 21 C -0.174 4.174 22 C 0.067 3.933 23 C -0.099 4.099 24 H 0.149 0.851 25 H 0.111 0.889 26 H 0.017 0.983 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.261 0.739 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.015 0.985 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.010 0.990 43 H 0.081 0.919 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 1.961 -16.620 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.073 4.073 3 C -0.054 4.054 4 C -0.071 4.071 5 N -0.232 5.232 6 C 0.024 3.976 7 C -0.575 4.575 8 H 0.049 0.951 9 C -0.187 4.187 10 N -0.595 5.595 11 Si 0.762 3.238 12 H -0.196 1.196 13 H -0.222 1.222 14 H -0.154 1.154 15 C -0.013 4.013 16 C -0.139 4.139 17 C -0.064 4.064 18 N -0.232 5.232 19 C -0.125 4.125 20 C -0.186 4.186 21 C -0.211 4.211 22 C -0.061 4.061 23 C -0.137 4.137 24 H 0.167 0.833 25 H 0.129 0.871 26 H 0.035 0.965 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.034 0.966 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.028 0.972 43 H 0.100 0.900 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.634 1.290 -17.156 18.439 hybrid contribution 0.002 1.102 2.633 2.855 sum 6.636 2.392 -14.522 16.145 Atomic orbital electron populations 1.81170 1.14639 1.10554 1.11666 1.29635 0.95584 0.91281 0.90846 1.19366 0.78955 0.99323 1.07744 1.21908 0.89275 0.95147 1.00767 1.62495 1.06229 1.22373 1.32119 1.20222 0.96364 0.95443 0.85552 1.21883 1.29022 1.13266 0.93281 0.95108 1.25869 0.97775 0.98929 0.96126 1.70098 1.47481 1.40824 1.01072 0.85845 0.79332 0.80813 0.77835 1.19567 1.22219 1.15380 1.21405 0.95069 0.89344 0.95465 1.21654 0.99672 0.96458 0.96146 1.22049 0.86773 0.96543 1.01014 1.61816 1.06824 1.28739 1.25798 1.22505 0.94517 0.91574 1.03934 1.23082 1.01658 1.03763 0.90081 1.23104 0.92290 1.03599 1.02112 1.21983 1.00231 0.95514 0.88419 1.21517 0.94409 0.96701 1.01084 0.83324 0.87079 0.96490 0.89309 0.93663 0.94455 0.92981 0.97595 0.91159 0.89401 0.96620 0.88941 0.89741 0.88432 0.87315 0.87640 0.88730 0.89779 0.97192 0.89999 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.65 18.54 20.00 0.37 -17.28 16 2 C 0.24 7.24 15.43 89.44 1.38 8.62 16 3 C -0.01 -0.35 5.72 28.79 0.16 -0.18 16 4 C 0.06 1.84 4.60 86.30 0.40 2.23 16 5 N -0.51 -17.09 4.56 -875.11 -3.99 -21.07 16 6 C 0.15 6.11 3.58 85.55 0.31 6.41 16 7 C -0.54 -27.69 8.07 25.60 0.21 -27.48 16 8 H 0.03 1.83 6.13 -2.91 -0.02 1.81 16 9 C 0.01 0.56 5.47 84.66 0.46 1.02 16 10 N -0.95 -57.94 13.96 21.45 0.30 -57.64 16 11 Si 0.94 41.06 27.38 68.60 1.88 42.94 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.23 -8.89 6.67 99.48 0.66 -8.23 16 15 C 0.10 3.23 1.64 44.99 0.07 3.30 16 16 C -0.10 -2.66 5.12 30.64 0.16 -2.50 16 17 C 0.06 1.60 5.43 86.32 0.47 2.07 16 18 N -0.51 -12.67 4.80 -871.12 -4.18 -16.85 16 19 C -0.02 -0.35 5.30 44.91 0.24 -0.11 16 20 C -0.15 -2.45 10.46 30.59 0.32 -2.13 16 21 C -0.17 -3.09 9.70 30.59 0.30 -2.79 16 22 C 0.07 1.92 5.34 86.32 0.46 2.38 16 23 C -0.10 -3.17 4.93 30.64 0.15 -3.02 16 24 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.11 2.93 6.57 -2.39 -0.02 2.92 16 26 H 0.02 0.68 6.33 -2.39 -0.02 0.66 16 27 H 0.09 2.40 5.78 -2.39 -0.01 2.38 16 28 H 0.05 1.73 5.82 -2.39 -0.01 1.71 16 29 H 0.04 1.51 5.41 -2.39 -0.01 1.49 16 30 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.01 0.26 6.76 -2.39 -0.02 0.24 16 32 H 0.07 1.75 6.29 -2.39 -0.01 1.73 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.02 0.43 8.14 -2.38 -0.02 0.42 16 35 H 0.09 1.93 8.12 -2.39 -0.02 1.91 16 36 H 0.08 1.80 8.08 -2.39 -0.02 1.78 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.78 7.23 -2.39 -0.02 1.77 16 41 H 0.08 2.18 6.68 -2.39 -0.02 2.17 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.05 1.95 6.48 -2.39 -0.02 1.94 16 Total: -1.00 -64.80 340.02 0.40 -64.40 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.94 Total: 17.69 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.08 Total: -12.18 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -7.50 Total: -112.85 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.88 Total: 42.94 kcal Total: -64.80 0.40 -64.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256081262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.702 kcal (2) G-P(sol) polarization free energy of solvation -64.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds