Wall clock time and date at job start Mon Mar 30 2020 02:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47000 * 2 1 4 4 C 1.46892 * 111.00270 * 294.50940 * 3 2 1 5 5 C 1.50699 * 109.47245 * 295.70984 * 4 3 2 6 6 H 1.08000 * 120.00162 * 3.87285 * 5 4 3 7 7 C 1.37880 * 119.99850 * 183.86834 * 5 4 3 8 8 N 1.31521 * 119.99767 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00345 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46765 * 89.99624 * 9 7 5 11 11 H 1.48496 * 109.47081 * 209.99763 * 9 7 5 12 12 H 1.48498 * 109.46760 * 330.00092 * 9 7 5 13 13 C 1.46906 * 110.99884 * 58.46509 * 3 2 1 14 14 H 1.08993 * 109.46736 * 294.73932 * 13 3 2 15 15 C 1.53004 * 109.46968 * 174.74037 * 13 3 2 16 16 C 1.53005 * 109.46950 * 54.74386 * 13 3 2 17 17 C 1.50699 * 109.46975 * 185.09858 * 16 13 3 18 18 C 1.38288 * 119.97375 * 84.53179 * 17 16 13 19 19 C 1.38237 * 120.10941 * 179.70203 * 18 17 16 20 20 C 1.38169 * 120.06062 * 0.25727 * 19 18 17 21 21 C 1.38708 * 119.93925 * 0.02562 * 20 19 18 22 22 O 1.35899 * 120.05448 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99964 * 0.02562 * 22 21 20 24 24 C 1.38123 * 119.97022 * 264.79170 * 17 16 13 25 25 H 1.08999 * 109.47427 * 181.13639 * 1 2 3 26 26 H 1.09004 * 109.47346 * 301.13573 * 1 2 3 27 27 H 1.09004 * 109.47224 * 61.13292 * 1 2 3 28 28 H 1.08999 * 109.47047 * 240.00397 * 2 1 3 29 29 H 1.08998 * 109.47432 * 120.00367 * 2 1 3 30 30 H 1.09000 * 109.47119 * 55.71542 * 4 3 2 31 31 H 1.09001 * 109.47185 * 175.71247 * 4 3 2 32 32 H 0.96994 * 119.99936 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46676 * 180.02562 * 15 13 3 34 34 H 1.09004 * 109.46978 * 299.99912 * 15 13 3 35 35 H 1.08998 * 109.46842 * 60.00247 * 15 13 3 36 36 H 1.08993 * 109.47242 * 65.09659 * 16 13 3 37 37 H 1.09004 * 109.46802 * 305.09714 * 16 13 3 38 38 H 1.07995 * 119.94109 * 359.97438 * 18 17 16 39 39 H 1.08004 * 119.96945 * 180.27605 * 19 18 17 40 40 H 1.07998 * 120.03225 * 179.97438 * 20 19 18 41 41 H 1.09006 * 109.47017 * 179.97438 * 23 22 21 42 42 H 1.08992 * 109.47677 * 299.99907 * 23 22 21 43 43 H 1.08999 * 109.46997 * 60.00028 * 23 22 21 44 44 H 1.08003 * 120.02921 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6587 2.0710 -1.2478 5 6 2.3553 1.4054 -2.4066 6 1 2.9514 0.5200 -2.2419 7 6 2.2315 1.9268 -3.6770 8 7 2.8390 1.3456 -4.6883 9 14 1.2010 3.4586 -3.9617 10 1 2.0563 4.6641 -3.8188 11 1 0.6244 3.4201 -5.3296 12 1 0.1033 3.5093 -2.9629 13 6 1.5187 2.1204 1.1690 14 1 0.4351 2.2157 1.1012 15 6 2.1520 3.5128 1.2052 16 6 1.8852 1.3602 2.4452 17 6 1.2651 2.0470 3.6346 18 6 -0.0417 1.7672 3.9902 19 6 -0.6113 2.3910 5.0844 20 6 0.1223 3.2999 5.8226 21 6 1.4313 3.5866 5.4644 22 8 2.1551 4.4798 6.1890 23 6 1.5050 5.0860 7.3080 24 6 2.0007 2.9594 4.3654 25 1 -0.3634 -1.0274 0.0204 26 1 -0.3634 0.5314 0.8796 27 1 -0.3634 0.4961 -0.9000 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.5797 2.0174 -1.3929 31 1 1.9661 3.1152 -1.1903 32 1 2.7523 1.7126 -5.5820 33 1 1.7807 4.0583 2.0728 34 1 3.2357 3.4174 1.2729 35 1 1.8909 4.0544 0.2960 36 1 2.9690 1.3434 2.5596 37 1 1.5109 0.3385 2.3796 38 1 -0.6166 1.0569 3.4147 39 1 -1.6306 2.1674 5.3628 40 1 -0.3234 3.7873 6.6771 41 1 2.1924 5.7757 7.7978 42 1 0.6253 5.6310 6.9658 43 1 1.2016 4.3132 8.0143 44 1 3.0200 3.1805 4.0850 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256164636.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:08 Heat of formation + Delta-G solvation = -29.441243 kcal Electronic energy + Delta-G solvation = -21875.201690 eV Core-core repulsion = 18792.139775 eV Total energy + Delta-G solvation = -3083.061915 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16984 -39.84555 -38.28755 -35.05191 -34.07444 -31.99828 -31.49430 -30.63227 -28.28783 -28.17130 -27.35017 -24.46567 -23.50931 -23.38923 -21.81601 -20.01746 -18.92195 -18.61276 -17.16642 -16.97531 -16.92379 -16.60191 -16.50318 -16.12018 -15.54949 -14.87972 -14.73420 -14.60154 -14.40726 -13.96162 -13.74564 -13.56045 -13.44790 -13.17987 -13.09268 -12.78453 -12.64350 -12.58289 -12.41382 -12.30070 -12.07107 -11.95049 -11.85085 -11.66674 -11.56469 -11.26087 -11.21502 -10.73181 -9.69695 -9.11208 -8.88164 -8.26123 -6.27265 0.38989 0.52990 1.33853 1.34241 1.45107 2.34825 2.40381 2.80598 3.06708 3.26967 3.90762 3.93448 4.04616 4.12064 4.24333 4.29335 4.32755 4.41191 4.46853 4.48395 4.49729 4.57583 4.64815 4.66469 4.70638 4.74635 4.90132 4.96410 4.97279 5.04542 5.10112 5.16643 5.21572 5.32206 5.34123 5.37883 5.49427 5.53467 5.62502 5.74250 5.88363 6.06288 6.47683 6.50826 6.73650 6.79241 7.35492 8.90562 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026388 B = 0.003941 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.843057 B = 7103.360500 C = 7538.906271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.054 3.946 3 N -0.536 5.536 4 C 0.170 3.830 5 C -0.508 4.508 6 H 0.040 0.960 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.940 3.060 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.254 1.254 13 C 0.087 3.913 14 H 0.036 0.964 15 C -0.142 4.142 16 C -0.069 4.069 17 C -0.038 4.038 18 C -0.164 4.164 19 C -0.079 4.079 20 C -0.216 4.216 21 C 0.114 3.886 22 O -0.339 6.339 23 C 0.019 3.981 24 C -0.162 4.162 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.087 0.913 30 H -0.012 1.012 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 5.063 25.251 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.074 4.074 3 N -0.260 5.260 4 C 0.043 3.957 5 C -0.546 4.546 6 H 0.058 0.942 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.764 3.236 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.177 1.177 13 C -0.021 4.021 14 H 0.054 0.946 15 C -0.200 4.200 16 C -0.107 4.107 17 C -0.039 4.039 18 C -0.182 4.182 19 C -0.097 4.097 20 C -0.234 4.234 21 C 0.069 3.931 22 O -0.254 6.254 23 C -0.075 4.075 24 C -0.181 4.181 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.006 0.994 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.134 0.866 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.671 5.140 25.081 26.727 hybrid contribution -1.051 0.544 -0.870 1.469 sum -8.722 5.684 24.211 26.355 Atomic orbital electron populations 1.22297 0.97847 1.02506 1.01151 1.22073 0.93361 0.90253 1.01671 1.62114 1.59553 1.02506 1.01834 1.19951 0.93353 0.94619 0.87811 1.21291 1.29516 1.12173 0.91658 0.94188 1.25780 0.96878 1.00451 0.95753 1.70046 1.45818 1.42740 1.00450 0.85817 0.79908 0.80026 0.77852 1.19144 1.20732 1.17748 1.21545 0.96582 0.94005 0.89935 0.94637 1.21889 1.01329 0.95684 1.01061 1.20666 1.01235 0.98838 0.89934 1.19638 0.94166 0.94997 0.95054 1.21180 0.94864 1.02956 0.99170 1.21220 1.00396 0.94379 0.93713 1.21471 0.93791 1.03928 1.04248 1.19169 0.91158 0.90696 0.92099 1.86051 1.41943 1.54893 1.42478 1.23318 0.99758 0.98104 0.86322 1.20419 1.01397 1.00112 0.96172 0.90955 0.91544 0.94718 0.93113 0.89480 0.99423 0.95397 0.92566 0.91201 0.92380 0.94004 0.90574 0.89556 0.85123 0.83318 0.83367 0.86625 0.91812 0.91561 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.81 9.18 71.98 0.66 -5.15 16 2 C 0.05 2.02 5.35 86.30 0.46 2.48 16 3 N -0.54 -21.97 4.58 -875.54 -4.01 -25.98 16 4 C 0.17 8.22 3.41 85.56 0.29 8.51 16 5 C -0.51 -29.66 9.06 25.60 0.23 -29.43 16 6 H 0.04 2.59 7.10 -2.91 -0.02 2.57 16 7 C 0.01 0.49 5.47 84.65 0.46 0.95 16 8 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 9 Si 0.94 44.99 27.39 68.60 1.88 46.87 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.25 -11.43 6.66 99.48 0.66 -10.77 16 13 C 0.09 2.88 1.54 44.92 0.07 2.95 16 14 H 0.04 1.18 6.55 -2.39 -0.02 1.17 16 15 C -0.14 -4.63 8.67 71.98 0.62 -4.01 16 16 C -0.07 -1.87 4.55 29.85 0.14 -1.73 16 17 C -0.04 -0.93 4.56 -19.88 -0.09 -1.02 16 18 C -0.16 -3.50 9.72 22.28 0.22 -3.28 16 19 C -0.08 -1.43 10.04 22.25 0.22 -1.20 16 20 C -0.22 -3.96 9.04 22.37 0.20 -3.76 16 21 C 0.11 2.58 6.69 22.51 0.15 2.73 16 22 O -0.34 -7.25 10.50 -92.41 -0.97 -8.22 16 23 C 0.02 0.22 9.81 113.37 1.11 1.34 16 24 C -0.16 -4.05 8.31 22.37 0.19 -3.86 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.07 1.87 6.40 -2.38 -0.02 1.86 16 27 H 0.03 1.30 6.50 -2.39 -0.02 1.29 16 28 H 0.05 2.25 6.53 -2.39 -0.02 2.24 16 29 H 0.09 2.72 6.20 -2.39 -0.01 2.70 16 30 H -0.01 -0.57 5.61 -2.39 -0.01 -0.59 16 31 H 0.03 1.36 5.16 -2.39 -0.01 1.35 16 32 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 33 H 0.07 2.00 6.53 -2.38 -0.02 1.99 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.04 1.47 6.26 -2.39 -0.01 1.46 16 36 H 0.08 2.12 8.05 -2.39 -0.02 2.10 16 37 H 0.09 2.17 6.01 -2.39 -0.01 2.16 16 38 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.15 1.87 6.30 -2.91 -0.02 1.86 16 41 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 43 H 0.07 0.60 7.66 -2.39 -0.02 0.59 16 44 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -69.14 338.13 3.07 -66.07 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.93 Total: 15.60 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 4.94 Total: -34.49 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -3.71 Total: -85.83 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.97 Total: -8.22 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -69.14 3.07 -66.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256164636.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.629 kcal (2) G-P(sol) polarization free energy of solvation -69.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds