Wall clock time and date at job start Mon Mar 30 2020 02:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47361 * 2 1 4 4 C 1.46909 * 110.99924 * 68.22183 * 3 2 1 5 5 C 1.50695 * 109.46897 * 64.35583 * 4 3 2 6 6 H 1.07999 * 120.00645 * 5.08621 * 5 4 3 7 7 C 1.37887 * 119.99861 * 185.08791 * 5 4 3 8 8 N 1.31514 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99678 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47167 * 89.99972 * 9 7 5 11 11 H 1.48506 * 109.46785 * 209.99477 * 9 7 5 12 12 H 1.48490 * 109.47471 * 329.99509 * 9 7 5 13 13 C 1.46899 * 111.00543 * 304.26598 * 3 2 1 14 14 H 1.09004 * 109.46735 * 66.30844 * 13 3 2 15 15 C 1.52993 * 109.47369 * 186.30549 * 13 3 2 16 16 C 1.52998 * 109.46897 * 306.31089 * 13 3 2 17 17 C 1.50701 * 109.46929 * 174.68485 * 16 13 3 18 18 C 1.38162 * 120.02904 * 267.93646 * 17 16 13 19 19 C 1.38245 * 120.05702 * 179.77170 * 18 17 16 20 20 C 1.38285 * 120.10959 * 0.50483 * 19 18 17 21 21 C 1.38123 * 120.05602 * 359.75158 * 20 19 18 22 22 C 1.38708 * 120.02636 * 88.21579 * 17 16 13 23 23 O 1.35900 * 120.05847 * 359.97438 * 22 17 16 24 24 C 1.42898 * 117.00026 * 180.02562 * 23 22 17 25 25 H 1.09008 * 109.47102 * 65.08551 * 1 2 3 26 26 H 1.08995 * 109.47639 * 185.08191 * 1 2 3 27 27 H 1.09006 * 109.47329 * 305.08610 * 1 2 3 28 28 H 1.09009 * 109.46611 * 240.00028 * 2 1 3 29 29 H 1.08997 * 109.47059 * 120.00624 * 2 1 3 30 30 H 1.08993 * 109.47219 * 184.35921 * 4 3 2 31 31 H 1.09002 * 109.46726 * 304.36037 * 4 3 2 32 32 H 0.96991 * 119.99761 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46950 * 60.00428 * 15 13 3 34 34 H 1.08996 * 109.47260 * 179.97438 * 15 13 3 35 35 H 1.09003 * 109.47224 * 300.00206 * 15 13 3 36 36 H 1.08993 * 109.47276 * 54.68580 * 16 13 3 37 37 H 1.08998 * 109.47135 * 294.68255 * 16 13 3 38 38 H 1.07997 * 119.97167 * 0.02562 * 18 17 16 39 39 H 1.08002 * 119.94508 * 180.25521 * 19 18 17 40 40 H 1.08005 * 119.97443 * 179.76625 * 20 19 18 41 41 H 1.08001 * 120.02525 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.47392 * 60.00412 * 24 23 22 43 43 H 1.09002 * 109.47376 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.47282 * 299.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7154 2.0509 1.2736 5 6 2.4644 1.3681 2.3889 6 1 3.1651 0.5776 2.1642 7 6 2.2549 1.7525 3.6964 8 7 1.4020 2.7154 3.9701 9 14 3.1838 0.9066 5.0788 10 1 4.4577 1.6264 5.3321 11 1 2.3554 0.9179 6.3112 12 1 3.4767 -0.4968 4.6921 13 6 1.4673 2.1387 -1.1333 14 1 0.3903 2.2488 -1.0061 15 6 2.1179 3.5222 -1.1913 16 6 1.7528 1.3858 -2.4343 17 6 1.0750 2.0901 -3.5813 18 6 -0.1993 1.7186 -3.9648 19 6 -0.8234 2.3674 -5.0139 20 6 -0.1704 3.3824 -5.6889 21 6 1.1057 3.7540 -5.3128 22 6 1.7323 3.1079 -4.2567 23 8 2.9877 3.4716 -3.8848 24 6 3.6032 4.5279 -4.6248 25 1 -0.3634 0.4329 -0.9321 26 1 -0.3634 -1.0235 0.0910 27 1 -0.3634 0.5907 0.8410 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.0192 3.0962 1.2187 31 1 0.6442 1.9934 1.4668 32 1 1.2544 2.9856 4.8899 33 1 3.1949 3.4122 -1.3186 34 1 1.7083 4.0814 -2.0325 35 1 1.9144 4.0586 -0.2645 36 1 1.3710 0.3680 -2.3563 37 1 2.8283 1.3581 -2.6095 38 1 -0.7098 0.9235 -3.4419 39 1 -1.8212 2.0783 -5.3095 40 1 -0.6586 3.8853 -6.5106 41 1 1.6151 4.5471 -5.8400 42 1 2.9992 5.4312 -4.5395 43 1 4.5995 4.7185 -4.2259 44 1 3.6802 4.2400 -5.6733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258892557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:16 Heat of formation + Delta-G solvation = -11.941875 kcal Electronic energy + Delta-G solvation = -22353.107981 eV Core-core repulsion = 19270.804895 eV Total energy + Delta-G solvation = -3082.303086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.33279 -37.93528 -37.20096 -33.51067 -32.29777 -30.69121 -30.00713 -28.76305 -27.38320 -26.32491 -25.75402 -22.82507 -22.40419 -21.93578 -20.78150 -18.38595 -17.88859 -16.28923 -16.19590 -15.87540 -15.70360 -14.94756 -14.73931 -14.40816 -14.30317 -13.70870 -13.49615 -13.23334 -12.63378 -12.58450 -12.11909 -11.96670 -11.85579 -11.77707 -11.61574 -11.36815 -11.21072 -11.13819 -10.84781 -10.80176 -10.67117 -10.54743 -10.31082 -10.02873 -9.90998 -9.56774 -9.06962 -8.75229 -8.34334 -8.03432 -7.02455 -5.95526 -3.95545 1.35387 1.48280 3.33906 3.36049 3.41858 3.45624 3.78814 4.48124 4.74562 4.82498 4.96898 5.05017 5.10114 5.19245 5.35198 5.39580 5.43593 5.48911 5.64266 5.66551 5.70510 5.86218 5.96230 6.03897 6.11805 6.18763 6.25073 6.37502 6.38840 6.44622 6.51920 6.63172 6.64875 6.76478 6.83640 6.86021 7.00578 7.04959 7.44938 7.49115 7.56094 7.90586 8.23526 8.35366 8.69436 9.13083 9.67883 11.15260 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.004325 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.228753 B = 6472.434935 C = 7016.987520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 N -0.531 5.531 4 C 0.187 3.813 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.091 3.909 14 H 0.030 0.970 15 C -0.133 4.133 16 C -0.070 4.070 17 C -0.098 4.098 18 C -0.082 4.082 19 C -0.158 4.158 20 C -0.092 4.092 21 C -0.211 4.211 22 C 0.133 3.867 23 O -0.302 6.302 24 C 0.027 3.973 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.031 0.969 31 H -0.003 1.003 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.052 0.948 43 H 0.099 0.901 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 1.218 -19.492 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.072 4.072 3 N -0.255 5.255 4 C 0.063 3.937 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.018 4.018 14 H 0.047 0.953 15 C -0.191 4.191 16 C -0.108 4.108 17 C -0.099 4.099 18 C -0.100 4.100 19 C -0.176 4.176 20 C -0.110 4.110 21 C -0.230 4.230 22 C 0.087 3.913 23 O -0.215 6.215 24 C -0.069 4.069 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.015 0.985 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.013 1.243 -19.225 19.292 hybrid contribution -0.588 -0.044 0.690 0.908 sum -1.600 1.199 -18.535 18.643 Atomic orbital electron populations 1.22405 0.99700 1.01006 1.01511 1.22032 0.91823 0.91920 1.01408 1.62358 1.57889 1.01402 1.03836 1.19798 0.95038 0.94754 0.84154 1.21193 1.23384 1.19141 0.90411 0.91970 1.24974 0.95504 0.95378 0.98775 1.69962 1.35471 1.29245 1.19314 0.86548 0.79688 0.79944 0.81517 1.20730 1.21447 1.19906 1.21421 0.96197 0.93937 0.90239 0.95261 1.21820 1.01304 0.95581 1.00377 1.20641 1.00952 0.98003 0.91183 1.19403 0.94811 0.97035 0.98696 1.20935 0.93480 0.99319 0.96314 1.20997 1.00360 0.98327 0.97926 1.20841 0.94124 0.96882 0.99192 1.21189 0.97642 1.03848 1.00321 1.18838 0.84763 0.94296 0.93364 1.86234 1.26566 1.52300 1.56353 1.23025 0.98470 0.89210 0.96154 0.93747 0.93564 0.91748 0.92807 0.90004 0.95088 0.98480 0.93085 0.92035 0.93763 0.92632 0.91011 0.90138 0.85607 0.86241 0.86290 0.85819 0.92894 0.88277 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 9.00 37.16 0.33 -3.07 16 2 C 0.06 1.12 5.34 -3.83 -0.02 1.10 16 3 N -0.53 -11.63 4.58 -228.09 -1.05 -12.67 16 4 C 0.19 4.93 4.40 -4.97 -0.02 4.90 16 5 C -0.50 -14.23 8.27 -34.44 -0.28 -14.51 16 6 H 0.06 1.75 7.25 -52.49 -0.38 1.37 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.09 1.72 1.50 -67.72 -0.10 1.62 16 14 H 0.03 0.59 6.73 -51.93 -0.35 0.24 16 15 C -0.13 -2.50 7.73 37.15 0.29 -2.21 16 16 C -0.07 -1.13 4.20 -27.88 -0.12 -1.24 16 17 C -0.10 -1.43 4.78 -104.48 -0.50 -1.93 16 18 C -0.08 -1.07 9.69 -39.61 -0.38 -1.45 16 19 C -0.16 -1.79 10.04 -39.56 -0.40 -2.19 16 20 C -0.09 -1.00 10.04 -39.61 -0.40 -1.40 16 21 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 22 C 0.13 1.82 5.41 -39.22 -0.21 1.61 16 23 O -0.30 -4.09 7.56 -19.43 -0.15 -4.23 16 24 C 0.03 0.25 9.81 101.05 0.99 1.24 16 25 H 0.04 0.73 6.27 -51.92 -0.33 0.41 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.36 6.34 -51.93 -0.33 1.03 16 28 H 0.05 0.94 6.36 -51.92 -0.33 0.61 16 29 H 0.08 1.78 6.65 -51.93 -0.35 1.43 16 30 H 0.03 0.87 5.98 -51.93 -0.31 0.56 16 31 H 0.00 -0.07 6.28 -51.93 -0.33 -0.40 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.06 1.16 7.91 -51.93 -0.41 0.75 16 34 H 0.04 0.75 5.82 -51.93 -0.30 0.45 16 35 H 0.05 1.15 6.29 -51.93 -0.33 0.82 16 36 H 0.07 1.10 5.58 -51.93 -0.29 0.81 16 37 H 0.08 1.36 7.59 -51.93 -0.39 0.96 16 38 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.12 1.15 6.30 -52.49 -0.33 0.82 16 42 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -30.93 336.43 -8.48 -39.41 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.80 Total: 0.71 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.28 Total: -18.89 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.31 Total: -38.96 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.15 Total: -4.23 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.93 -8.48 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258892557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.471 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds