Wall clock time and date at job start Mon Mar 30 2020 02:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47361 * 2 1 4 4 C 1.46909 * 110.99924 * 68.22183 * 3 2 1 5 5 C 1.50695 * 109.46897 * 64.35583 * 4 3 2 6 6 H 1.07999 * 120.00645 * 5.08621 * 5 4 3 7 7 C 1.37887 * 119.99861 * 185.08791 * 5 4 3 8 8 N 1.31514 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99678 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47167 * 89.99972 * 9 7 5 11 11 H 1.48506 * 109.46785 * 209.99477 * 9 7 5 12 12 H 1.48490 * 109.47471 * 329.99509 * 9 7 5 13 13 C 1.46899 * 111.00543 * 304.26598 * 3 2 1 14 14 H 1.09004 * 109.46735 * 66.30844 * 13 3 2 15 15 C 1.52993 * 109.47369 * 186.30549 * 13 3 2 16 16 C 1.52998 * 109.46897 * 306.31089 * 13 3 2 17 17 C 1.50701 * 109.46929 * 174.68485 * 16 13 3 18 18 C 1.38162 * 120.02904 * 267.93646 * 17 16 13 19 19 C 1.38245 * 120.05702 * 179.77170 * 18 17 16 20 20 C 1.38285 * 120.10959 * 0.50483 * 19 18 17 21 21 C 1.38123 * 120.05602 * 359.75158 * 20 19 18 22 22 C 1.38708 * 120.02636 * 88.21579 * 17 16 13 23 23 O 1.35900 * 120.05847 * 359.97438 * 22 17 16 24 24 C 1.42898 * 117.00026 * 180.02562 * 23 22 17 25 25 H 1.09008 * 109.47102 * 65.08551 * 1 2 3 26 26 H 1.08995 * 109.47639 * 185.08191 * 1 2 3 27 27 H 1.09006 * 109.47329 * 305.08610 * 1 2 3 28 28 H 1.09009 * 109.46611 * 240.00028 * 2 1 3 29 29 H 1.08997 * 109.47059 * 120.00624 * 2 1 3 30 30 H 1.08993 * 109.47219 * 184.35921 * 4 3 2 31 31 H 1.09002 * 109.46726 * 304.36037 * 4 3 2 32 32 H 0.96991 * 119.99761 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46950 * 60.00428 * 15 13 3 34 34 H 1.08996 * 109.47260 * 179.97438 * 15 13 3 35 35 H 1.09003 * 109.47224 * 300.00206 * 15 13 3 36 36 H 1.08993 * 109.47276 * 54.68580 * 16 13 3 37 37 H 1.08998 * 109.47135 * 294.68255 * 16 13 3 38 38 H 1.07997 * 119.97167 * 0.02562 * 18 17 16 39 39 H 1.08002 * 119.94508 * 180.25521 * 19 18 17 40 40 H 1.08005 * 119.97443 * 179.76625 * 20 19 18 41 41 H 1.08001 * 120.02525 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.47392 * 60.00412 * 24 23 22 43 43 H 1.09002 * 109.47376 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.47282 * 299.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7154 2.0509 1.2736 5 6 2.4644 1.3681 2.3889 6 1 3.1651 0.5776 2.1642 7 6 2.2549 1.7525 3.6964 8 7 1.4020 2.7154 3.9701 9 14 3.1838 0.9066 5.0788 10 1 4.4577 1.6264 5.3321 11 1 2.3554 0.9179 6.3112 12 1 3.4767 -0.4968 4.6921 13 6 1.4673 2.1387 -1.1333 14 1 0.3903 2.2488 -1.0061 15 6 2.1179 3.5222 -1.1913 16 6 1.7528 1.3858 -2.4343 17 6 1.0750 2.0901 -3.5813 18 6 -0.1993 1.7186 -3.9648 19 6 -0.8234 2.3674 -5.0139 20 6 -0.1704 3.3824 -5.6889 21 6 1.1057 3.7540 -5.3128 22 6 1.7323 3.1079 -4.2567 23 8 2.9877 3.4716 -3.8848 24 6 3.6032 4.5279 -4.6248 25 1 -0.3634 0.4329 -0.9321 26 1 -0.3634 -1.0235 0.0910 27 1 -0.3634 0.5907 0.8410 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.0192 3.0962 1.2187 31 1 0.6442 1.9934 1.4668 32 1 1.2544 2.9856 4.8899 33 1 3.1949 3.4122 -1.3186 34 1 1.7083 4.0814 -2.0325 35 1 1.9144 4.0586 -0.2645 36 1 1.3710 0.3680 -2.3563 37 1 2.8283 1.3581 -2.6095 38 1 -0.7098 0.9235 -3.4419 39 1 -1.8212 2.0783 -5.3095 40 1 -0.6586 3.8853 -6.5106 41 1 1.6151 4.5471 -5.8400 42 1 2.9992 5.4312 -4.5395 43 1 4.5995 4.7185 -4.2259 44 1 3.6802 4.2400 -5.6733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258892557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:16 Heat of formation + Delta-G solvation = -30.352297 kcal Electronic energy + Delta-G solvation = -22353.906317 eV Core-core repulsion = 19270.804895 eV Total energy + Delta-G solvation = -3083.101421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31256 -39.46805 -38.17931 -35.18453 -34.10408 -32.05541 -30.96746 -30.42452 -28.27510 -27.99086 -27.25113 -24.67689 -23.76244 -22.90327 -22.10058 -19.96469 -18.82554 -18.38710 -17.29997 -17.09690 -16.79970 -16.47181 -16.22994 -15.90029 -15.33193 -15.12354 -14.89384 -14.49024 -14.05027 -13.77253 -13.62504 -13.48015 -13.28088 -13.14661 -13.02138 -12.78810 -12.67469 -12.51724 -12.45384 -12.30705 -12.07914 -11.90865 -11.81109 -11.61388 -11.56011 -11.20079 -11.14350 -10.54753 -9.71904 -8.99398 -8.83921 -8.16297 -6.25173 0.42851 0.56866 1.41068 1.42627 1.53601 2.42177 2.50580 2.85492 3.16038 3.36690 3.90595 3.94145 4.14210 4.20759 4.26169 4.31740 4.35378 4.44499 4.48211 4.52469 4.54373 4.60142 4.68814 4.76690 4.78708 4.81133 4.92997 4.99917 5.04088 5.08523 5.17505 5.25877 5.33450 5.39211 5.44885 5.47846 5.57129 5.60804 5.68292 5.73008 5.95825 6.14414 6.46317 6.57786 6.77068 6.92958 7.43818 8.94552 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.004325 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.228753 B = 6472.434935 C = 7016.987520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.056 3.944 3 N -0.539 5.539 4 C 0.205 3.795 5 C -0.518 4.518 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.966 3.034 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.094 3.906 14 H 0.018 0.982 15 C -0.120 4.120 16 C -0.053 4.053 17 C -0.127 4.127 18 C -0.091 4.091 19 C -0.161 4.161 20 C -0.088 4.088 21 C -0.214 4.214 22 C 0.118 3.882 23 O -0.328 6.328 24 C 0.019 3.981 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.026 0.974 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.004 0.996 31 H -0.031 1.031 32 H 0.262 0.738 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.692 0.606 -21.409 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.072 4.072 3 N -0.263 5.263 4 C 0.079 3.921 5 C -0.556 4.556 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.791 3.209 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.015 4.015 14 H 0.036 0.964 15 C -0.178 4.178 16 C -0.091 4.091 17 C -0.128 4.128 18 C -0.109 4.109 19 C -0.179 4.179 20 C -0.106 4.106 21 C -0.233 4.233 22 C 0.073 3.927 23 O -0.241 6.241 24 C -0.076 4.076 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.022 0.978 31 H -0.013 1.013 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.168 0.832 41 H 0.164 0.836 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.105 0.624 -21.167 21.205 hybrid contribution -0.579 0.205 1.169 1.320 sum -1.685 0.828 -19.999 20.087 Atomic orbital electron populations 1.22278 0.98406 1.02071 1.00768 1.22073 0.92936 0.90500 1.01723 1.62280 1.58641 1.02511 1.02835 1.19403 0.92884 0.93577 0.86205 1.21484 1.23521 1.19202 0.91440 0.92126 1.25874 0.96308 0.95941 1.01471 1.70096 1.36905 1.30657 1.20024 0.85434 0.78311 0.79169 0.78019 1.20015 1.20855 1.18814 1.21460 0.95204 0.94103 0.90685 0.96406 1.21684 1.01024 0.95625 0.99422 1.20392 1.00542 0.98066 0.90099 1.19356 0.95885 0.98445 0.99117 1.21118 0.93041 0.99779 0.96988 1.21327 1.01373 0.98058 0.97190 1.21272 0.93725 0.96241 0.99390 1.21497 0.98080 1.04038 0.99672 1.19034 0.85059 0.94522 0.94099 1.86187 1.26772 1.53557 1.57608 1.23271 0.98798 0.88574 0.96928 0.92036 0.90935 0.95438 0.89748 0.92280 0.97822 1.01340 0.92884 0.92524 0.92037 0.95551 0.90303 0.91239 0.84978 0.83831 0.83241 0.83582 0.92063 0.87341 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.40 9.00 71.98 0.65 -5.75 16 2 C 0.06 2.20 5.34 86.30 0.46 2.66 16 3 N -0.54 -24.30 4.58 -875.54 -4.01 -28.31 16 4 C 0.21 11.34 4.40 85.55 0.38 11.72 16 5 C -0.52 -30.20 8.27 25.60 0.21 -29.99 16 6 H 0.06 3.48 7.25 -2.91 -0.02 3.46 16 7 C 0.00 0.09 5.46 84.66 0.46 0.55 16 8 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 9 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.09 3.63 1.50 44.91 0.07 3.70 16 14 H 0.02 0.74 6.73 -2.38 -0.02 0.72 16 15 C -0.12 -4.67 7.73 71.98 0.56 -4.12 16 16 C -0.05 -1.70 4.20 29.85 0.13 -1.57 16 17 C -0.13 -3.56 4.78 -19.77 -0.09 -3.65 16 18 C -0.09 -2.21 9.69 22.25 0.22 -1.99 16 19 C -0.16 -3.20 10.04 22.28 0.22 -2.98 16 20 C -0.09 -1.62 10.04 22.25 0.22 -1.40 16 21 C -0.21 -4.42 9.04 22.37 0.20 -4.22 16 22 C 0.12 3.09 5.41 22.51 0.12 3.21 16 23 O -0.33 -8.62 7.56 -92.43 -0.70 -9.32 16 24 C 0.02 0.32 9.81 113.37 1.11 1.43 16 25 H 0.06 1.99 6.27 -2.38 -0.01 1.98 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.03 1.18 6.34 -2.38 -0.02 1.17 16 28 H 0.08 2.83 6.36 -2.38 -0.02 2.81 16 29 H 0.06 2.60 6.65 -2.39 -0.02 2.58 16 30 H 0.00 0.23 5.98 -2.39 -0.01 0.21 16 31 H -0.03 -1.86 6.28 -2.39 -0.01 -1.88 16 32 H 0.26 15.25 8.31 -92.72 -0.77 14.48 16 33 H 0.06 2.22 7.91 -2.38 -0.02 2.20 16 34 H 0.06 2.14 5.82 -2.39 -0.01 2.13 16 35 H 0.03 1.14 6.29 -2.39 -0.01 1.12 16 36 H 0.08 2.32 5.58 -2.39 -0.01 2.30 16 37 H 0.07 2.34 7.59 -2.39 -0.02 2.32 16 38 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.15 2.25 6.30 -2.91 -0.02 2.23 16 42 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 43 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 Total: -1.00 -68.80 336.43 3.49 -65.30 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.98 Total: 14.80 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 4.91 Total: -32.39 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -3.73 Total: -85.82 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.70 Total: -9.32 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -68.80 3.49 -65.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258892557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.950 kcal (2) G-P(sol) polarization free energy of solvation -68.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds