Wall clock time and date at job start Mon Mar 30 2020 01:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46950 * 2 1 4 4 C 1.46900 * 110.99596 * 201.49696 * 3 2 1 5 5 C 1.50701 * 109.47478 * 66.04801 * 4 3 2 6 6 C 1.38302 * 119.92913 * 269.72900 * 5 4 3 7 7 C 1.38098 * 120.06842 * 179.72150 * 6 5 4 8 8 C 1.38882 * 119.92981 * 0.56838 * 7 6 5 9 9 O 1.35745 * 120.06900 * 179.67952 * 8 7 6 10 10 C 1.34826 * 116.99946 * 174.35685 * 9 8 7 11 11 H 1.08004 * 120.00378 * 5.09616 * 10 9 8 12 12 C 1.38662 * 120.00369 * 185.09806 * 10 9 8 13 13 N 1.31558 * 119.99440 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00365 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46895 * 60.00109 * 14 12 10 16 16 H 1.48502 * 109.46923 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46977 * 299.99754 * 14 12 10 18 18 C 1.38883 * 119.85893 * 359.70589 * 8 7 6 19 19 C 1.38099 * 119.93223 * 359.97438 * 18 8 7 20 20 C 1.46896 * 111.00039 * 77.54427 * 3 2 1 21 21 C 1.53008 * 109.47178 * 157.90951 * 20 3 2 22 22 C 1.52998 * 109.47231 * 277.90631 * 20 3 2 23 23 C 1.52997 * 109.47294 * 37.91339 * 20 3 2 24 24 H 1.09002 * 109.47181 * 158.55878 * 1 2 3 25 25 H 1.09000 * 109.47308 * 278.56664 * 1 2 3 26 26 H 1.09006 * 109.46892 * 38.56728 * 1 2 3 27 27 H 1.09000 * 109.47223 * 240.00193 * 2 1 3 28 28 H 1.09002 * 109.46759 * 119.99833 * 2 1 3 29 29 H 1.08998 * 109.47031 * 186.05018 * 4 3 2 30 30 H 1.09002 * 109.47572 * 306.04410 * 4 3 2 31 31 H 1.08004 * 119.96643 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.03520 * 180.26710 * 7 6 5 33 33 H 0.96998 * 120.00083 * 179.97438 * 13 12 10 34 34 H 1.07996 * 120.03034 * 179.97438 * 18 8 7 35 35 H 1.07999 * 119.96164 * 180.02562 * 19 18 8 36 36 H 1.08998 * 109.47031 * 59.99811 * 21 20 3 37 37 H 1.08993 * 109.47401 * 179.97438 * 21 20 3 38 38 H 1.08997 * 109.46782 * 300.00089 * 21 20 3 39 39 H 1.09006 * 109.46548 * 75.12788 * 22 20 3 40 40 H 1.08995 * 109.47489 * 195.12477 * 22 20 3 41 41 H 1.08991 * 109.47340 * 315.13170 * 22 20 3 42 42 H 1.08997 * 109.47451 * 59.99430 * 23 20 3 43 43 H 1.09003 * 109.47195 * 179.97438 * 23 20 3 44 44 H 1.09008 * 109.46979 * 299.99905 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3982 1.4559 -0.5026 5 6 3.4229 1.0670 -1.9583 6 6 3.6113 -0.2556 -2.3161 7 6 3.6287 -0.6161 -3.6491 8 6 3.4685 0.3528 -4.6311 9 8 3.4916 0.0026 -5.9424 10 6 3.2140 0.9701 -6.8393 11 1 3.0679 1.9877 -6.5083 12 6 3.1160 0.6588 -8.1870 13 7 3.2944 -0.5806 -8.5904 14 14 2.7320 1.9995 -9.4298 15 1 3.7902 3.0401 -9.3781 16 1 2.6816 1.4114 -10.7925 17 1 1.4185 2.6124 -9.1068 18 6 3.2851 1.6809 -4.2686 19 6 3.2621 2.0341 -2.9338 20 6 1.9162 1.9799 1.3391 21 6 2.8931 3.1520 1.4533 22 6 0.4888 2.4819 1.5653 23 6 2.2593 0.9257 2.3935 24 1 -0.3634 -0.9566 -0.3757 25 1 -0.3634 0.1531 1.0162 26 1 -0.3633 0.8036 -0.6407 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7733 2.4733 -0.3919 30 1 4.0282 0.7725 0.0668 31 1 3.7410 -1.0079 -1.5521 32 1 3.7716 -1.6497 -3.9277 33 1 3.2255 -0.7985 -9.5331 34 1 3.1607 2.4367 -5.0300 35 1 3.1191 3.0666 -2.6514 36 1 2.6488 3.9031 0.7022 37 1 2.8161 3.5937 2.4467 38 1 3.9101 2.7944 1.2921 39 1 -0.1695 1.6333 1.7515 40 1 0.4710 3.1511 2.4255 41 1 0.1479 3.0188 0.6802 42 1 3.2762 0.5680 2.2323 43 1 2.1830 1.3673 3.3871 44 1 1.5634 0.0906 2.3121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330601725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:01 Heat of formation + Delta-G solvation = 9.151507 kcal Electronic energy + Delta-G solvation = -21938.818258 eV Core-core repulsion = 18857.429850 eV Total energy + Delta-G solvation = -3081.388408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77273 -38.69510 -36.46055 -33.07853 -32.31221 -31.52167 -30.11167 -28.51332 -27.60428 -27.07723 -25.51533 -23.98311 -22.43153 -21.61376 -20.37568 -18.48156 -17.93653 -16.92216 -16.45200 -15.48380 -14.91350 -14.51614 -14.46355 -14.24454 -13.84436 -13.59535 -13.55175 -13.21098 -12.78321 -12.67224 -12.48789 -12.47455 -12.22883 -11.88020 -11.77691 -11.66003 -11.37928 -11.23734 -11.16116 -11.07715 -10.79692 -10.64678 -10.50252 -10.46440 -10.36754 -10.17923 -9.29057 -8.79218 -8.12589 -8.05429 -7.11756 -6.41894 -4.00599 2.25663 2.34797 3.15119 3.16384 3.19025 3.98997 4.02445 4.65177 4.75358 4.84222 5.06600 5.11686 5.18668 5.30814 5.32978 5.40148 5.43746 5.50884 5.58786 5.62956 5.68371 5.74058 5.77955 5.79971 5.82462 5.90322 5.94436 6.00022 6.04521 6.12351 6.22030 6.26094 6.36222 6.46491 6.49169 6.74780 6.95874 7.09260 7.22567 7.30742 7.40574 7.47378 7.49871 7.87971 8.03432 9.03898 9.74770 10.76263 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029892 B = 0.003667 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.492808 B = 7632.977983 C = 7800.749035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.031 3.969 3 N -0.519 5.519 4 C 0.104 3.896 5 C -0.175 4.175 6 C -0.071 4.071 7 C -0.193 4.193 8 C 0.155 3.845 9 O -0.179 6.179 10 C -0.391 4.391 11 H 0.091 0.909 12 C 0.039 3.961 13 N -0.864 5.864 14 Si 0.940 3.060 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.270 1.270 18 C -0.234 4.234 19 C -0.050 4.050 20 C 0.100 3.900 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.179 4.179 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.270 0.730 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 4.624 18.889 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 N -0.244 5.244 4 C -0.022 4.022 5 C -0.176 4.176 6 C -0.090 4.090 7 C -0.213 4.213 8 C 0.101 3.899 9 O -0.083 6.083 10 C -0.468 4.468 11 H 0.109 0.891 12 C -0.165 4.165 13 N -0.500 5.500 14 Si 0.765 3.235 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.195 1.195 18 C -0.254 4.254 19 C -0.069 4.069 20 C 0.011 3.989 21 C -0.207 4.207 22 C -0.196 4.196 23 C -0.237 4.237 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.962 4.558 18.223 19.017 hybrid contribution 0.293 0.192 -0.119 0.370 sum -2.668 4.750 18.105 18.907 Atomic orbital electron populations 1.21928 0.95484 1.01828 1.01162 1.22411 0.95999 0.89487 1.01792 1.62425 1.21708 1.18649 1.21579 1.20994 0.88366 1.00744 0.92118 1.19109 1.11240 0.93574 0.93674 1.20471 0.98982 0.94945 0.94556 1.20160 1.11406 0.98388 0.91306 1.19380 0.92426 0.92407 0.85700 1.83972 1.76092 1.37939 1.10283 1.21279 1.49783 0.89305 0.86402 0.89145 1.25277 0.96716 0.97575 0.96924 1.70030 1.45718 1.17657 1.16546 0.85796 0.79273 0.79512 0.78942 1.19515 1.20305 1.19495 1.21154 1.11389 0.96448 0.96361 1.20537 0.96532 0.97860 0.91993 1.21069 0.96073 0.93972 0.87821 1.22118 0.98908 0.97962 1.01696 1.22017 0.95304 1.00951 1.01358 1.22514 1.01563 1.00183 0.99471 0.92986 0.93228 0.91522 0.89804 0.93904 0.90059 0.95321 0.87587 0.86733 0.92022 0.85698 0.87625 0.91662 0.92584 0.92161 0.92267 0.93127 0.91654 0.92857 0.92499 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.84 37.16 0.33 -1.39 16 2 C 0.03 0.39 5.07 -3.82 -0.02 0.37 16 3 N -0.52 -6.70 4.29 -220.40 -0.94 -7.64 16 4 C 0.10 1.44 4.11 -4.97 -0.02 1.42 16 5 C -0.17 -3.00 4.96 -104.58 -0.52 -3.52 16 6 C -0.07 -1.27 7.86 -39.61 -0.31 -1.58 16 7 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 8 C 0.15 3.79 6.65 -39.10 -0.26 3.53 16 9 O -0.18 -5.19 9.76 0.08 0.00 -5.19 16 10 C -0.39 -11.08 9.49 30.89 0.29 -10.78 16 11 H 0.09 2.37 5.21 -52.48 -0.27 2.10 16 12 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 13 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 14 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 C -0.23 -5.17 9.17 -39.39 -0.36 -5.53 16 19 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 20 C 0.10 1.05 0.77 -131.60 -0.10 0.95 16 21 C -0.15 -1.45 7.19 37.16 0.27 -1.18 16 22 C -0.14 -1.37 7.98 37.16 0.30 -1.07 16 23 C -0.18 -1.70 7.27 37.16 0.27 -1.43 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.50 5.68 -51.93 -0.30 0.21 16 26 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 27 H 0.08 1.23 4.90 -51.93 -0.25 0.97 16 28 H 0.04 0.49 5.11 -51.93 -0.27 0.23 16 29 H 0.08 1.05 5.54 -51.93 -0.29 0.76 16 30 H 0.03 0.38 7.69 -51.93 -0.40 -0.02 16 31 H 0.11 1.62 7.60 -52.48 -0.40 1.22 16 32 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 39 H 0.06 0.57 5.36 -51.93 -0.28 0.29 16 40 H 0.05 0.43 8.05 -51.93 -0.42 0.01 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.52 7.75 -51.93 -0.40 0.12 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.63 5.82 -51.92 -0.30 0.33 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -29.94 336.95 -7.85 -37.79 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.71 Total: 4.17 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -1.01 Total: -25.07 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: -0.19 Total: -32.48 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.94 -7.85 -37.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330601725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.945 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds