Wall clock time and date at job start Mon Mar 30 2020 01:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46950 * 2 1 4 4 C 1.46900 * 110.99596 * 201.49696 * 3 2 1 5 5 C 1.50701 * 109.47478 * 66.04801 * 4 3 2 6 6 C 1.38302 * 119.92913 * 269.72900 * 5 4 3 7 7 C 1.38098 * 120.06842 * 179.72150 * 6 5 4 8 8 C 1.38882 * 119.92981 * 0.56838 * 7 6 5 9 9 O 1.35745 * 120.06900 * 179.67952 * 8 7 6 10 10 C 1.34826 * 116.99946 * 174.35685 * 9 8 7 11 11 H 1.08004 * 120.00378 * 5.09616 * 10 9 8 12 12 C 1.38662 * 120.00369 * 185.09806 * 10 9 8 13 13 N 1.31558 * 119.99440 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00365 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46895 * 60.00109 * 14 12 10 16 16 H 1.48502 * 109.46923 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46977 * 299.99754 * 14 12 10 18 18 C 1.38883 * 119.85893 * 359.70589 * 8 7 6 19 19 C 1.38099 * 119.93223 * 359.97438 * 18 8 7 20 20 C 1.46896 * 111.00039 * 77.54427 * 3 2 1 21 21 C 1.53008 * 109.47178 * 157.90951 * 20 3 2 22 22 C 1.52998 * 109.47231 * 277.90631 * 20 3 2 23 23 C 1.52997 * 109.47294 * 37.91339 * 20 3 2 24 24 H 1.09002 * 109.47181 * 158.55878 * 1 2 3 25 25 H 1.09000 * 109.47308 * 278.56664 * 1 2 3 26 26 H 1.09006 * 109.46892 * 38.56728 * 1 2 3 27 27 H 1.09000 * 109.47223 * 240.00193 * 2 1 3 28 28 H 1.09002 * 109.46759 * 119.99833 * 2 1 3 29 29 H 1.08998 * 109.47031 * 186.05018 * 4 3 2 30 30 H 1.09002 * 109.47572 * 306.04410 * 4 3 2 31 31 H 1.08004 * 119.96643 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.03520 * 180.26710 * 7 6 5 33 33 H 0.96998 * 120.00083 * 179.97438 * 13 12 10 34 34 H 1.07996 * 120.03034 * 179.97438 * 18 8 7 35 35 H 1.07999 * 119.96164 * 180.02562 * 19 18 8 36 36 H 1.08998 * 109.47031 * 59.99811 * 21 20 3 37 37 H 1.08993 * 109.47401 * 179.97438 * 21 20 3 38 38 H 1.08997 * 109.46782 * 300.00089 * 21 20 3 39 39 H 1.09006 * 109.46548 * 75.12788 * 22 20 3 40 40 H 1.08995 * 109.47489 * 195.12477 * 22 20 3 41 41 H 1.08991 * 109.47340 * 315.13170 * 22 20 3 42 42 H 1.08997 * 109.47451 * 59.99430 * 23 20 3 43 43 H 1.09003 * 109.47195 * 179.97438 * 23 20 3 44 44 H 1.09008 * 109.46979 * 299.99905 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3982 1.4559 -0.5026 5 6 3.4229 1.0670 -1.9583 6 6 3.6113 -0.2556 -2.3161 7 6 3.6287 -0.6161 -3.6491 8 6 3.4685 0.3528 -4.6311 9 8 3.4916 0.0026 -5.9424 10 6 3.2140 0.9701 -6.8393 11 1 3.0679 1.9877 -6.5083 12 6 3.1160 0.6588 -8.1870 13 7 3.2944 -0.5806 -8.5904 14 14 2.7320 1.9995 -9.4298 15 1 3.7902 3.0401 -9.3781 16 1 2.6816 1.4114 -10.7925 17 1 1.4185 2.6124 -9.1068 18 6 3.2851 1.6809 -4.2686 19 6 3.2621 2.0341 -2.9338 20 6 1.9162 1.9799 1.3391 21 6 2.8931 3.1520 1.4533 22 6 0.4888 2.4819 1.5653 23 6 2.2593 0.9257 2.3935 24 1 -0.3634 -0.9566 -0.3757 25 1 -0.3634 0.1531 1.0162 26 1 -0.3633 0.8036 -0.6407 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7733 2.4733 -0.3919 30 1 4.0282 0.7725 0.0668 31 1 3.7410 -1.0079 -1.5521 32 1 3.7716 -1.6497 -3.9277 33 1 3.2255 -0.7985 -9.5331 34 1 3.1607 2.4367 -5.0300 35 1 3.1191 3.0666 -2.6514 36 1 2.6488 3.9031 0.7022 37 1 2.8161 3.5937 2.4467 38 1 3.9101 2.7944 1.2921 39 1 -0.1695 1.6333 1.7515 40 1 0.4710 3.1511 2.4255 41 1 0.1479 3.0188 0.6802 42 1 3.2762 0.5680 2.2323 43 1 2.1830 1.3673 3.3871 44 1 1.5634 0.0906 2.3121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330601725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:00 Heat of formation + Delta-G solvation = -8.542782 kcal Electronic energy + Delta-G solvation = -21939.585540 eV Core-core repulsion = 18857.429850 eV Total energy + Delta-G solvation = -3082.155690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04397 -40.18497 -38.13425 -34.44984 -33.88303 -32.77628 -31.74295 -29.89520 -28.35984 -27.86527 -27.44252 -25.33803 -23.81483 -22.92023 -21.91028 -19.83177 -19.37304 -18.79150 -17.41076 -16.63100 -16.47169 -16.21196 -15.74700 -15.49695 -15.34821 -15.02551 -14.91296 -14.37723 -14.30067 -14.02429 -13.64901 -13.51715 -13.42101 -13.02251 -12.91833 -12.78975 -12.59260 -12.48225 -12.41297 -12.35582 -12.15649 -11.99381 -11.88928 -11.73821 -11.37239 -11.17093 -11.14325 -10.76344 -9.73280 -9.08882 -8.83205 -8.46315 -6.14417 0.61492 0.71055 1.34869 1.45779 1.51237 2.18609 2.76018 3.05141 3.33634 3.53615 3.93382 3.98282 4.05756 4.14466 4.21278 4.29534 4.34679 4.42172 4.54756 4.61104 4.71138 4.73528 4.77906 4.79084 4.82652 4.88050 4.97788 5.03982 5.06237 5.11748 5.16905 5.18263 5.22038 5.26496 5.30922 5.35663 5.54060 5.59132 5.60465 5.73711 5.85345 6.04011 6.22708 6.32159 6.44198 6.98418 7.79941 8.76918 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029892 B = 0.003667 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.492808 B = 7632.977983 C = 7800.749035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 N -0.532 5.532 4 C 0.108 3.892 5 C -0.148 4.148 6 C -0.061 4.061 7 C -0.204 4.204 8 C 0.113 3.887 9 O -0.234 6.234 10 C -0.414 4.414 11 H 0.100 0.900 12 C -0.023 4.023 13 N -0.922 5.922 14 Si 1.018 2.982 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.258 1.258 18 C -0.242 4.242 19 C -0.051 4.051 20 C 0.098 3.902 21 C -0.149 4.149 22 C -0.136 4.136 23 C -0.175 4.175 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.273 0.727 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 6.356 22.092 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 N -0.256 5.256 4 C -0.019 4.019 5 C -0.149 4.149 6 C -0.079 4.079 7 C -0.224 4.224 8 C 0.062 3.938 9 O -0.141 6.141 10 C -0.491 4.491 11 H 0.118 0.882 12 C -0.220 4.220 13 N -0.560 5.560 14 Si 0.837 3.163 15 H -0.181 1.181 16 H -0.195 1.195 17 H -0.183 1.183 18 C -0.262 4.262 19 C -0.070 4.070 20 C 0.009 3.991 21 C -0.207 4.207 22 C -0.194 4.194 23 C -0.234 4.234 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.158 0.842 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.268 6.305 21.497 22.639 hybrid contribution 0.377 -0.341 -0.700 0.865 sum -2.891 5.964 20.797 21.827 Atomic orbital electron populations 1.21885 0.94988 1.01219 1.01897 1.22422 0.96453 0.89482 1.01492 1.62360 1.20777 1.18858 1.23652 1.20999 0.89542 1.01963 0.89407 1.19629 1.06808 0.92760 0.95745 1.20830 0.97177 0.96322 0.93589 1.20407 1.11608 0.97939 0.92401 1.19915 0.94541 0.94288 0.85012 1.83934 1.79066 1.38988 1.12075 1.21780 1.50209 0.89903 0.87169 0.88246 1.26584 0.96237 1.00358 0.98812 1.70180 1.48432 1.20308 1.17104 0.84666 0.79659 0.76226 0.75777 1.18076 1.19537 1.18253 1.21242 1.11706 0.95328 0.97895 1.20862 0.95631 0.99789 0.90685 1.21177 0.96747 0.94495 0.86685 1.22118 0.98559 0.97418 1.02560 1.21991 0.94866 1.01166 1.01342 1.22465 1.01338 0.99762 0.99798 0.92872 0.91420 0.93295 0.91975 0.92200 0.88572 0.93838 0.84185 0.87130 0.91852 0.86586 0.84758 0.92375 0.90890 0.92046 0.92101 0.91473 0.93179 0.93033 0.91000 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.84 71.98 0.64 -2.41 16 2 C 0.03 0.65 5.07 86.30 0.44 1.09 16 3 N -0.53 -11.98 4.29 -851.21 -3.65 -15.63 16 4 C 0.11 2.56 4.11 85.56 0.35 2.91 16 5 C -0.15 -4.72 4.96 -19.83 -0.10 -4.82 16 6 C -0.06 -2.08 7.86 22.25 0.17 -1.90 16 7 C -0.20 -8.92 9.99 22.39 0.22 -8.70 16 8 C 0.11 5.77 6.65 22.58 0.15 5.92 16 9 O -0.23 -14.44 9.76 -22.65 -0.22 -14.66 16 10 C -0.41 -24.71 9.49 67.92 0.64 -24.07 16 11 H 0.10 5.46 5.21 -2.91 -0.02 5.44 16 12 C -0.02 -1.31 5.49 84.84 0.47 -0.84 16 13 N -0.92 -57.54 13.67 21.62 0.30 -57.25 16 14 Si 1.02 43.59 29.55 68.60 2.03 45.62 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 18 C -0.24 -10.91 9.17 22.39 0.21 -10.70 16 19 C -0.05 -1.83 9.69 22.25 0.22 -1.62 16 20 C 0.10 1.69 0.77 3.53 0.00 1.70 16 21 C -0.15 -2.30 7.19 71.98 0.52 -1.78 16 22 C -0.14 -2.24 7.98 71.98 0.57 -1.67 16 23 C -0.18 -2.59 7.27 71.98 0.52 -2.06 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.19 5.68 -2.39 -0.01 1.17 16 26 H 0.05 1.21 8.12 -2.38 -0.02 1.19 16 27 H 0.06 1.66 4.90 -2.39 -0.01 1.65 16 28 H 0.06 1.16 5.11 -2.39 -0.01 1.15 16 29 H 0.10 2.07 5.54 -2.39 -0.01 2.06 16 30 H 0.04 0.95 7.69 -2.39 -0.02 0.93 16 31 H 0.14 3.85 7.60 -2.91 -0.02 3.83 16 32 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 33 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 35 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.06 0.99 8.03 -2.39 -0.02 0.97 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.93 6.34 -2.39 -0.02 0.92 16 39 H 0.06 0.97 5.36 -2.38 -0.01 0.96 16 40 H 0.07 0.89 8.05 -2.39 -0.02 0.87 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 0.79 7.75 -2.39 -0.02 0.77 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 0.98 5.82 -2.38 -0.01 0.97 16 Total: -1.00 -69.49 336.95 4.46 -65.02 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.98 Total: 25.86 kcal Atomic # 6 Polarization: -53.99 SS G_CDS: 5.03 Total: -48.96 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -3.35 Total: -72.88 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.22 Total: -14.66 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -69.49 4.46 -65.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330601725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.481 kcal (2) G-P(sol) polarization free energy of solvation -69.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds