Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47096 * 2 1 4 4 C 1.42899 * 113.99783 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47198 * 180.02562 * 4 3 2 6 6 C 1.38284 * 119.92910 * 89.99453 * 5 4 3 7 7 C 1.38102 * 120.07730 * 179.97438 * 6 5 4 8 8 C 1.38905 * 119.92398 * 0.28542 * 7 6 5 9 9 N 1.39669 * 120.07711 * 179.72013 * 8 7 6 10 10 C 1.46502 * 120.00681 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47514 * 179.97438 * 10 9 8 12 12 H 1.09005 * 109.46772 * 55.00581 * 11 10 9 13 13 C 1.52998 * 109.47226 * 295.00483 * 11 10 9 14 14 C 1.52997 * 109.46628 * 175.00097 * 11 10 9 15 15 C 1.50710 * 109.46609 * 185.00152 * 14 11 10 16 16 H 1.07993 * 120.00028 * 0.02562 * 15 14 11 17 17 C 1.37874 * 119.99988 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00231 * 180.02562 * 17 15 14 19 19 Si 1.86810 * 120.00029 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47308 * 89.99384 * 19 17 15 21 21 H 1.48499 * 109.46936 * 209.99707 * 19 17 15 22 22 H 1.48498 * 109.46842 * 329.99441 * 19 17 15 23 23 C 1.38914 * 119.85122 * 359.43987 * 8 7 6 24 24 C 1.38104 * 119.92314 * 0.53768 * 23 8 7 25 25 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47230 * 300.00209 * 1 2 3 27 27 H 1.09001 * 109.47491 * 60.00158 * 1 2 3 28 28 H 1.08999 * 109.47230 * 239.99791 * 2 1 3 29 29 H 1.08999 * 109.46796 * 120.00455 * 2 1 3 30 30 H 1.08998 * 109.47459 * 60.00195 * 4 3 2 31 31 H 1.09005 * 109.47441 * 299.99760 * 4 3 2 32 32 H 1.08008 * 119.95755 * 0.02755 * 6 5 4 33 33 H 1.08002 * 120.03497 * 180.02562 * 7 6 5 34 34 H 0.97008 * 120.00083 * 0.02562 * 9 8 7 35 35 H 1.08995 * 109.47221 * 300.00552 * 10 9 8 36 36 H 1.09006 * 109.46597 * 60.00077 * 10 9 8 37 37 H 1.09000 * 109.46889 * 179.97438 * 13 11 10 38 38 H 1.08997 * 109.46990 * 299.99729 * 13 11 10 39 39 H 1.08996 * 109.47078 * 59.99819 * 13 11 10 40 40 H 1.08994 * 109.47337 * 304.99907 * 14 11 10 41 41 H 1.08996 * 109.47293 * 65.00397 * 14 11 10 42 42 H 0.97005 * 119.99982 * 180.02562 * 18 17 15 43 43 H 1.07997 * 120.04003 * 180.25530 * 23 8 7 44 44 H 1.08007 * 119.96360 * 179.74357 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 6 3.9978 3.5820 1.1988 7 6 4.3545 4.9162 1.2030 8 6 4.5283 5.5908 0.0013 9 7 4.8833 6.9416 0.0019 10 6 5.0668 7.6514 -1.2665 11 6 5.4491 9.1062 -0.9863 12 1 6.3280 9.1332 -0.3421 13 6 4.2849 9.8145 -0.2907 14 6 5.7619 9.8144 -2.3059 15 6 6.2564 11.2095 -2.0222 16 1 6.3395 11.5561 -1.0028 17 6 6.6036 12.0430 -3.0641 18 7 7.0355 13.2603 -2.8166 19 14 6.4604 11.4434 -4.8275 20 1 5.1077 11.7622 -5.3506 21 1 7.4860 12.1167 -5.6641 22 1 6.6738 9.9744 -4.8696 23 6 4.3539 4.9174 -1.2011 24 6 3.9977 3.5831 -1.1981 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.8333 0.9767 -0.8908 31 1 3.8340 0.9764 0.8892 32 1 3.8589 3.0578 2.1329 33 1 4.4940 5.4355 2.1397 34 1 5.0092 7.4097 0.8421 35 1 5.8592 7.1711 -1.8404 36 1 4.1377 7.6235 -1.8361 37 1 4.5575 10.8507 -0.0906 38 1 3.4061 9.7875 -0.9348 39 1 4.0621 9.3098 0.6494 40 1 6.5305 9.2588 -2.8431 41 1 4.8587 9.8656 -2.9138 42 1 7.2794 13.8468 -3.5497 43 1 4.4923 5.4378 -2.1372 44 1 3.8579 3.0599 -2.1326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349599822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = -43.307249 kcal Electronic energy + Delta-G solvation = -20460.361949 eV Core-core repulsion = 17376.698759 eV Total energy + Delta-G solvation = -3083.663190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.60224 -38.10297 -36.72028 -34.22144 -32.33420 -31.63641 -30.86683 -29.71394 -27.58442 -26.31254 -24.69634 -23.03713 -23.03159 -22.03650 -20.72732 -19.33847 -17.23992 -16.91821 -16.77193 -16.35591 -15.84924 -15.39448 -14.73559 -14.30837 -14.20375 -13.91135 -13.52296 -13.35378 -13.11845 -13.07759 -12.97623 -12.76290 -12.33375 -12.14041 -11.80368 -11.63912 -11.58822 -11.13188 -11.10667 -10.93977 -10.85707 -10.55677 -10.07692 -9.81579 -9.80878 -9.75048 -9.61833 -9.15536 -8.85126 -8.56997 -7.24159 -6.07194 -4.05257 1.53084 1.56813 3.28586 3.36470 3.39145 3.50292 3.66120 4.11565 4.42311 4.73062 4.79066 4.83010 5.00533 5.05654 5.11598 5.14701 5.21844 5.25860 5.39386 5.42039 5.48629 5.55255 5.60353 5.71929 5.77274 5.81882 5.85728 6.07782 6.08996 6.25675 6.30120 6.40226 6.46386 6.65840 6.72377 6.80209 6.94257 6.98040 7.02818 7.17690 7.34175 7.50475 7.75224 7.90759 8.49875 8.97007 9.54956 11.05924 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033134 B = 0.002621 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.852568 B =10681.202596 C =11086.369170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.384 6.384 4 C 0.115 3.885 5 C -0.167 4.167 6 C -0.049 4.049 7 C -0.207 4.207 8 C 0.233 3.767 9 N -0.738 5.738 10 C 0.123 3.877 11 C -0.087 4.087 12 H 0.068 0.932 13 C -0.134 4.134 14 C -0.006 4.006 15 C -0.516 4.516 16 H 0.074 0.926 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.204 4.204 24 C -0.048 4.048 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.399 0.601 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.033 0.967 40 H 0.017 0.983 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.667 -25.098 6.414 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.304 6.304 4 C 0.039 3.961 5 C -0.169 4.169 6 C -0.068 4.068 7 C -0.230 4.230 8 C 0.127 3.873 9 N -0.365 5.365 10 C -0.001 4.001 11 C -0.106 4.106 12 H 0.087 0.913 13 C -0.191 4.191 14 C -0.044 4.044 15 C -0.554 4.554 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.542 5.542 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.227 4.227 24 C -0.067 4.067 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.234 0.766 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.693 -24.656 6.121 26.851 hybrid contribution 0.203 -0.154 -0.699 0.744 sum -8.490 -24.811 5.422 26.778 Atomic orbital electron populations 1.21740 0.93878 1.02022 1.03234 1.22437 0.95586 0.84317 0.99813 1.88023 1.21273 1.25805 1.95329 1.21161 0.81145 0.93710 1.00050 1.19176 1.09072 0.95101 0.93559 1.20656 0.95615 0.93494 0.97010 1.20537 1.10820 0.95319 0.96276 1.17966 0.91098 0.84493 0.93786 1.45016 1.75269 1.07182 1.09066 1.21663 1.00105 0.93277 0.85068 1.21244 0.98231 0.90961 1.00173 0.91349 1.21735 0.97671 1.01532 0.98196 1.19568 0.96267 0.96476 0.92107 1.21078 1.43363 0.95841 0.95148 0.90830 1.25029 0.94672 0.94751 0.99105 1.69909 1.44989 1.07120 1.32164 0.86799 0.77986 0.79494 0.85128 1.20312 1.21415 1.19017 1.20662 1.10038 0.95183 0.96779 1.20721 0.95303 0.93565 0.97070 0.91290 0.91862 0.91836 0.93604 0.93632 0.93076 0.93119 0.86542 0.86317 0.76572 0.92526 0.92550 0.91222 0.93497 0.94829 0.96463 0.96785 0.92734 0.85922 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.34 10.33 -35.23 -0.36 -4.71 16 4 C 0.12 1.15 6.06 36.01 0.22 1.37 16 5 C -0.17 -2.00 5.51 -104.59 -0.58 -2.58 16 6 C -0.05 -0.58 9.69 -39.61 -0.38 -0.96 16 7 C -0.21 -2.58 9.90 -39.38 -0.39 -2.97 16 8 C 0.23 3.22 6.65 -83.79 -0.56 2.66 16 9 N -0.74 -10.34 5.46 -58.63 -0.32 -10.66 16 10 C 0.12 1.92 4.30 -4.04 -0.02 1.91 16 11 C -0.09 -1.61 2.37 -90.62 -0.22 -1.83 16 12 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 13 C -0.13 -2.37 8.88 37.16 0.33 -2.04 16 14 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 15 C -0.52 -14.19 8.96 -34.44 -0.31 -14.50 16 16 H 0.07 2.17 7.30 -52.49 -0.38 1.78 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 19 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 23 C -0.20 -2.77 9.31 -39.38 -0.37 -3.14 16 24 C -0.05 -0.59 9.69 -39.61 -0.38 -0.98 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.40 5.16 7.67 -40.82 -0.31 4.85 16 35 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 36 H 0.06 0.89 7.96 -51.93 -0.41 0.47 16 37 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.50 7.18 -51.93 -0.37 0.13 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 43 H 0.12 1.63 6.73 -52.49 -0.35 1.28 16 44 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -30.48 357.37 -9.02 -39.50 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.61 Total: 1.92 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -2.22 Total: -21.49 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.45 Total: -37.36 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.36 Total: -4.71 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.48 -9.02 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349599822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.807 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds