Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47495 * 2 1 4 4 N 1.31795 * 119.08167 * 89.99768 * 3 2 1 5 5 C 1.32549 * 121.00732 * 180.02562 * 4 3 2 6 6 C 1.38119 * 119.20254 * 359.97438 * 5 4 3 7 7 C 1.39619 * 118.32925 * 0.28015 * 6 5 4 8 8 N 1.38548 * 120.52939 * 179.72294 * 7 6 5 9 9 C 1.46500 * 119.99983 * 4.99900 * 8 7 6 10 10 C 1.50697 * 109.47531 * 89.99878 * 9 8 7 11 11 H 1.08003 * 119.99831 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00239 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99944 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00077 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46988 * 90.00283 * 14 12 10 16 16 H 1.48505 * 109.47150 * 209.99963 * 14 12 10 17 17 H 1.48491 * 109.47123 * 330.00146 * 14 12 10 18 18 C 1.46501 * 120.00223 * 184.99951 * 8 7 6 19 19 C 1.52999 * 109.47195 * 89.99746 * 18 8 7 20 20 C 1.52993 * 109.46955 * 180.02562 * 19 18 8 21 21 C 1.53008 * 109.46975 * 175.00256 * 20 19 18 22 22 C 1.52998 * 109.47550 * 294.99985 * 20 19 18 23 23 N 1.31745 * 119.08728 * 269.97899 * 3 2 1 24 24 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46675 * 299.99840 * 1 2 3 26 26 H 1.09003 * 109.46888 * 60.00024 * 1 2 3 27 27 H 1.09006 * 109.47110 * 239.99999 * 2 1 3 28 28 H 1.09007 * 109.47326 * 120.00142 * 2 1 3 29 29 H 1.08006 * 120.39643 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.83114 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47158 * 210.00541 * 9 8 7 32 32 H 1.09001 * 109.47161 * 329.99984 * 9 8 7 33 33 H 0.97003 * 119.99888 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47010 * 209.99854 * 18 8 7 35 35 H 1.09003 * 109.46940 * 329.99934 * 18 8 7 36 36 H 1.09004 * 109.46956 * 300.00229 * 19 18 8 37 37 H 1.09003 * 109.47024 * 60.00239 * 19 18 8 38 38 H 1.08997 * 109.47518 * 55.00291 * 20 19 18 39 39 H 1.08998 * 109.47069 * 60.00244 * 21 20 19 40 40 H 1.09000 * 109.47108 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.46712 * 299.99705 * 21 20 19 42 42 H 1.08995 * 109.47528 * 180.02562 * 22 20 19 43 43 H 1.09005 * 109.47098 * 300.00880 * 22 20 19 44 44 H 1.09000 * 109.47093 * 59.99562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6871 3.2738 1.1963 6 6 2.9252 3.9470 0.0140 7 6 2.6836 3.2799 -1.1884 8 7 2.9014 3.9137 -2.4010 9 6 3.4919 5.2541 -2.4313 10 6 4.9926 5.1403 -2.5082 11 1 5.4599 4.1668 -2.5317 12 6 5.7692 6.2788 -2.5474 13 7 7.0789 6.1794 -2.6150 14 14 4.9612 7.9625 -2.5060 15 1 4.8182 8.4083 -1.0968 16 1 5.8030 8.9340 -3.2495 17 1 3.6201 7.8836 -3.1387 18 6 2.5412 3.2436 -3.6530 19 6 1.0977 3.5925 -4.0212 20 6 0.7214 2.8922 -5.3284 21 6 -0.7578 3.1393 -5.6319 22 6 1.5758 3.4481 -6.4693 23 7 2.2463 2.0244 -1.1513 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.8591 3.7591 2.1458 30 1 3.2845 4.9655 0.0196 31 1 3.1233 5.7940 -3.3035 32 1 3.2145 5.7939 -1.5259 33 1 7.6253 6.9804 -2.6430 34 1 3.2092 3.5752 -4.4478 35 1 2.6334 2.1648 -3.5273 36 1 0.4297 3.2609 -3.2263 37 1 1.0055 4.6713 -4.1470 38 1 0.8982 1.8211 -5.2307 39 1 -0.9346 4.2104 -5.7296 40 1 -1.0260 2.6400 -6.5629 41 1 -1.3665 2.7432 -4.8191 42 1 1.3074 2.9495 -7.4006 43 1 1.3991 4.5193 -6.5669 44 1 2.6296 3.2722 -6.2531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350005002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = 27.999067 kcal Electronic energy + Delta-G solvation = -22044.733576 eV Core-core repulsion = 18996.455211 eV Total energy + Delta-G solvation = -3048.278365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38344 -37.55075 -35.72103 -33.75537 -32.97348 -31.99374 -30.29036 -29.13116 -27.25194 -26.98290 -24.62469 -23.79362 -22.80833 -21.70580 -20.08174 -19.71023 -17.05756 -17.01225 -16.76753 -15.19861 -14.86560 -14.77344 -14.64205 -14.05319 -14.01323 -13.87663 -13.70576 -13.23522 -13.12292 -12.64285 -12.45182 -12.25604 -12.09587 -11.99130 -11.73820 -11.49605 -11.33634 -10.99419 -10.95276 -10.87866 -10.67370 -10.52814 -10.40661 -10.26444 -10.08293 -9.94231 -9.60009 -9.08100 -8.75249 -8.57893 -7.08964 -6.23829 -4.25497 1.66096 2.02685 3.14579 3.22184 3.23299 3.57550 4.23382 4.43544 4.47537 4.79160 4.99904 5.05704 5.07142 5.08894 5.32869 5.41761 5.44822 5.51638 5.58565 5.66683 5.77234 5.82898 5.87273 5.92003 5.94822 5.95639 6.02107 6.07595 6.13291 6.19543 6.22872 6.30660 6.31430 6.34233 6.51772 6.56209 6.62957 6.67753 6.97275 7.36216 7.41486 8.00591 8.05407 8.36495 8.81431 8.90295 9.34572 10.89039 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.006994 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.713819 B = 4002.357634 C = 5965.483248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.349 3.651 4 N -0.578 5.578 5 C 0.162 3.838 6 C -0.285 4.285 7 C 0.450 3.550 8 N -0.568 5.568 9 C 0.221 3.779 10 C -0.539 4.539 11 H 0.077 0.923 12 C 0.077 3.923 13 N -0.890 5.890 14 Si 0.871 3.129 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.126 3.874 19 C -0.126 4.126 20 C -0.092 4.092 21 C -0.144 4.144 22 C -0.151 4.151 23 N -0.583 5.583 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.144 0.856 31 H 0.036 0.964 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.684 -6.626 -0.726 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C 0.079 3.921 4 N -0.299 5.299 5 C 0.003 3.997 6 C -0.313 4.313 7 C 0.206 3.794 8 N -0.276 5.276 9 C 0.100 3.900 10 C -0.578 4.578 11 H 0.095 0.905 12 C -0.127 4.127 13 N -0.528 5.528 14 Si 0.697 3.303 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.189 1.189 18 C 0.003 3.997 19 C -0.165 4.165 20 C -0.111 4.111 21 C -0.202 4.202 22 C -0.208 4.208 23 N -0.309 5.309 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.173 0.827 30 H 0.162 0.838 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.749 -7.252 -0.944 15.573 hybrid contribution 0.285 2.066 0.002 2.086 sum -13.464 -5.185 -0.942 14.459 Atomic orbital electron populations 1.21641 0.94217 1.01687 1.02210 1.20219 0.96218 0.89096 1.03392 1.22636 0.90126 0.96149 0.83208 1.68129 1.20733 1.11244 1.29813 1.22681 0.89913 0.89536 0.97613 1.22263 1.12051 1.04145 0.92853 1.18532 0.86386 0.87536 0.86986 1.46753 1.61307 1.17841 1.01660 1.19802 0.94473 0.78258 0.97436 1.21376 0.88835 0.95355 1.52214 0.90500 1.24861 0.94673 0.98887 0.94281 1.69892 1.04029 1.29502 1.49368 0.86933 0.79930 0.84484 0.78921 1.19797 1.20775 1.18931 1.21423 0.94436 0.98118 0.85730 1.22018 0.97595 1.00400 0.96527 1.21033 0.94964 1.00242 0.94900 1.21819 0.95970 1.01435 1.00929 1.21912 1.00406 1.00933 0.97525 1.67713 1.23137 1.09265 1.30768 0.92107 0.92540 0.92532 0.89855 0.89794 0.82682 0.83835 0.94589 0.95273 0.92330 0.90337 0.90319 0.92177 0.92221 0.91142 0.92929 0.92996 0.92968 0.93139 0.92766 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.05 -0.67 6.37 -27.88 -0.18 -0.84 16 3 C 0.35 6.13 6.90 -157.24 -1.08 5.04 16 4 N -0.58 -10.36 10.33 -10.81 -0.11 -10.47 16 5 C 0.16 2.82 11.29 -17.29 -0.20 2.63 16 6 C -0.28 -5.55 9.33 -39.11 -0.36 -5.92 16 7 C 0.45 9.21 7.39 -154.77 -1.14 8.06 16 8 N -0.57 -11.67 2.56 -175.03 -0.45 -12.12 16 9 C 0.22 4.97 4.10 -5.19 -0.02 4.95 16 10 C -0.54 -14.50 9.94 -34.44 -0.34 -14.84 16 11 H 0.08 2.35 8.06 -52.48 -0.42 1.92 16 12 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 14 Si 0.87 19.95 27.47 -169.99 -4.67 15.28 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 18 C 0.13 2.23 5.24 -4.04 -0.02 2.21 16 19 C -0.13 -1.88 5.01 -26.73 -0.13 -2.02 16 20 C -0.09 -1.13 2.92 -90.62 -0.26 -1.40 16 21 C -0.14 -1.55 9.19 37.16 0.34 -1.20 16 22 C -0.15 -1.81 8.95 37.16 0.33 -1.47 16 23 N -0.58 -11.18 9.13 -9.97 -0.09 -11.27 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 29 H 0.16 2.15 8.06 -52.48 -0.42 1.73 16 30 H 0.14 2.81 6.16 -52.49 -0.32 2.49 16 31 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 32 H 0.03 0.65 5.47 -51.93 -0.28 0.36 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 1.43 6.50 -51.93 -0.34 1.09 16 35 H 0.08 1.40 7.33 -51.93 -0.38 1.02 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -29.81 355.60 -9.54 -39.35 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.55 Total: 3.31 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.80 Total: -4.02 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.12 Total: -59.28 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.81 -9.54 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350005002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.350 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds