Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47495 * 2 1 4 4 N 1.31795 * 119.08167 * 89.99768 * 3 2 1 5 5 C 1.32549 * 121.00732 * 180.02562 * 4 3 2 6 6 C 1.38119 * 119.20254 * 359.97438 * 5 4 3 7 7 C 1.39619 * 118.32925 * 0.28015 * 6 5 4 8 8 N 1.38548 * 120.52939 * 179.72294 * 7 6 5 9 9 C 1.46500 * 119.99983 * 4.99900 * 8 7 6 10 10 C 1.50697 * 109.47531 * 89.99878 * 9 8 7 11 11 H 1.08003 * 119.99831 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00239 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99944 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00077 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46988 * 90.00283 * 14 12 10 16 16 H 1.48505 * 109.47150 * 209.99963 * 14 12 10 17 17 H 1.48491 * 109.47123 * 330.00146 * 14 12 10 18 18 C 1.46501 * 120.00223 * 184.99951 * 8 7 6 19 19 C 1.52999 * 109.47195 * 89.99746 * 18 8 7 20 20 C 1.52993 * 109.46955 * 180.02562 * 19 18 8 21 21 C 1.53008 * 109.46975 * 175.00256 * 20 19 18 22 22 C 1.52998 * 109.47550 * 294.99985 * 20 19 18 23 23 N 1.31745 * 119.08728 * 269.97899 * 3 2 1 24 24 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46675 * 299.99840 * 1 2 3 26 26 H 1.09003 * 109.46888 * 60.00024 * 1 2 3 27 27 H 1.09006 * 109.47110 * 239.99999 * 2 1 3 28 28 H 1.09007 * 109.47326 * 120.00142 * 2 1 3 29 29 H 1.08006 * 120.39643 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.83114 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47158 * 210.00541 * 9 8 7 32 32 H 1.09001 * 109.47161 * 329.99984 * 9 8 7 33 33 H 0.97003 * 119.99888 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47010 * 209.99854 * 18 8 7 35 35 H 1.09003 * 109.46940 * 329.99934 * 18 8 7 36 36 H 1.09004 * 109.46956 * 300.00229 * 19 18 8 37 37 H 1.09003 * 109.47024 * 60.00239 * 19 18 8 38 38 H 1.08997 * 109.47518 * 55.00291 * 20 19 18 39 39 H 1.08998 * 109.47069 * 60.00244 * 21 20 19 40 40 H 1.09000 * 109.47108 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.46712 * 299.99705 * 21 20 19 42 42 H 1.08995 * 109.47528 * 180.02562 * 22 20 19 43 43 H 1.09005 * 109.47098 * 300.00880 * 22 20 19 44 44 H 1.09000 * 109.47093 * 59.99562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6871 3.2738 1.1963 6 6 2.9252 3.9470 0.0140 7 6 2.6836 3.2799 -1.1884 8 7 2.9014 3.9137 -2.4010 9 6 3.4919 5.2541 -2.4313 10 6 4.9926 5.1403 -2.5082 11 1 5.4599 4.1668 -2.5317 12 6 5.7692 6.2788 -2.5474 13 7 7.0789 6.1794 -2.6150 14 14 4.9612 7.9625 -2.5060 15 1 4.8182 8.4083 -1.0968 16 1 5.8030 8.9340 -3.2495 17 1 3.6201 7.8836 -3.1387 18 6 2.5412 3.2436 -3.6530 19 6 1.0977 3.5925 -4.0212 20 6 0.7214 2.8922 -5.3284 21 6 -0.7578 3.1393 -5.6319 22 6 1.5758 3.4481 -6.4693 23 7 2.2463 2.0244 -1.1513 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.8591 3.7591 2.1458 30 1 3.2845 4.9655 0.0196 31 1 3.1233 5.7940 -3.3035 32 1 3.2145 5.7939 -1.5259 33 1 7.6253 6.9804 -2.6430 34 1 3.2092 3.5752 -4.4478 35 1 2.6334 2.1648 -3.5273 36 1 0.4297 3.2609 -3.2263 37 1 1.0055 4.6713 -4.1470 38 1 0.8982 1.8211 -5.2307 39 1 -0.9346 4.2104 -5.7296 40 1 -1.0260 2.6400 -6.5629 41 1 -1.3665 2.7432 -4.8191 42 1 1.3074 2.9495 -7.4006 43 1 1.3991 4.5193 -6.5669 44 1 2.6296 3.2722 -6.2531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350005002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = 12.788607 kcal Electronic energy + Delta-G solvation = -22045.393151 eV Core-core repulsion = 18996.455211 eV Total energy + Delta-G solvation = -3048.937940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82583 -38.93859 -36.96385 -34.99507 -34.88137 -33.55541 -31.61038 -30.71631 -28.75237 -27.99135 -25.91681 -25.16911 -24.51619 -22.99614 -21.51782 -20.84986 -19.10395 -18.47938 -18.26646 -16.59762 -16.42097 -16.21733 -15.96016 -15.58713 -15.33808 -15.05963 -14.76909 -14.68344 -14.36339 -14.32026 -13.79586 -13.60846 -13.39952 -13.13766 -13.02718 -12.76728 -12.60021 -12.43639 -12.32258 -12.13582 -11.93739 -11.86117 -11.72470 -11.58940 -11.53116 -11.47551 -11.30702 -10.84473 -10.55714 -10.03957 -8.66982 -8.35490 -6.43690 0.23582 0.53672 1.35201 1.35968 1.46201 2.04198 2.28894 2.97613 3.01693 3.21733 3.47117 3.85785 3.95059 4.01295 4.08083 4.29280 4.34414 4.36760 4.42401 4.47312 4.56840 4.63951 4.69702 4.76296 4.81571 4.83125 4.83864 4.90206 4.98158 5.03850 5.05005 5.12952 5.14671 5.21286 5.31588 5.33832 5.38608 5.47361 5.50105 5.59384 5.81067 6.17532 6.50458 6.54846 6.63359 7.20857 7.44809 8.81217 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.006994 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.713819 B = 4002.357634 C = 5965.483248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.050 4.050 3 C 0.340 3.660 4 N -0.583 5.583 5 C 0.171 3.829 6 C -0.310 4.310 7 C 0.430 3.570 8 N -0.580 5.580 9 C 0.233 3.767 10 C -0.541 4.541 11 H 0.022 0.978 12 C 0.019 3.981 13 N -0.943 5.943 14 Si 0.944 3.056 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.240 1.240 18 C 0.128 3.872 19 C -0.112 4.112 20 C -0.089 4.089 21 C -0.140 4.140 22 C -0.149 4.149 23 N -0.592 5.592 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.191 0.809 30 H 0.138 0.862 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.269 0.731 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.194 -6.473 -0.469 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C 0.071 3.929 4 N -0.304 5.304 5 C 0.010 3.990 6 C -0.338 4.338 7 C 0.186 3.814 8 N -0.288 5.288 9 C 0.111 3.889 10 C -0.580 4.580 11 H 0.041 0.959 12 C -0.180 4.180 13 N -0.582 5.582 14 Si 0.766 3.234 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.164 1.164 18 C 0.006 3.994 19 C -0.151 4.151 20 C -0.108 4.108 21 C -0.197 4.197 22 C -0.206 4.206 23 N -0.318 5.318 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.208 0.792 30 H 0.156 0.844 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.292 -7.139 -0.689 17.801 hybrid contribution 1.131 1.852 -0.020 2.171 sum -15.161 -5.287 -0.709 16.072 Atomic orbital electron populations 1.21592 0.92452 1.03427 1.01413 1.20405 0.97574 0.86540 1.04356 1.23544 0.89015 0.97663 0.82721 1.68270 1.20850 1.11389 1.29845 1.23242 0.88073 0.89287 0.98353 1.22368 1.13633 1.04333 0.93491 1.18820 0.87001 0.88310 0.87222 1.46741 1.61855 1.17524 1.02692 1.19530 0.91459 0.79801 0.98106 1.21506 0.91411 0.93137 1.51933 0.95950 1.25818 0.95034 1.03634 0.93535 1.70060 1.06065 1.30979 1.51130 0.85768 0.79749 0.78203 0.79658 1.18550 1.20691 1.16359 1.21484 0.96050 0.97441 0.84453 1.21879 0.95198 1.00321 0.97678 1.21020 0.96342 0.99960 0.93457 1.21775 0.94334 1.01751 1.01822 1.21897 0.99358 1.01103 0.98280 1.67789 1.23499 1.08807 1.31679 0.89111 0.93011 0.93582 0.89281 0.88385 0.79182 0.84396 0.93581 0.94182 0.92152 0.91510 0.90977 0.92944 0.92628 0.90969 0.92833 0.91321 0.92827 0.91231 0.92865 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.89 71.98 0.71 -1.96 16 2 C -0.05 -1.24 6.37 29.85 0.19 -1.05 16 3 C 0.34 11.63 6.90 138.76 0.96 12.59 16 4 N -0.58 -20.11 10.33 -188.10 -1.94 -22.05 16 5 C 0.17 5.74 11.29 84.56 0.95 6.70 16 6 C -0.31 -12.09 9.33 22.57 0.21 -11.88 16 7 C 0.43 17.82 7.39 133.16 0.98 18.80 16 8 N -0.58 -24.31 2.56 -707.68 -1.81 -26.12 16 9 C 0.23 10.54 4.10 85.63 0.35 10.89 16 10 C -0.54 -30.15 9.94 25.60 0.25 -29.89 16 11 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 12 C 0.02 1.04 5.47 84.65 0.46 1.50 16 13 N -0.94 -57.34 13.96 21.44 0.30 -57.04 16 14 Si 0.94 40.88 27.47 68.60 1.88 42.76 16 15 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 18 C 0.13 4.64 5.24 86.38 0.45 5.10 16 19 C -0.11 -3.28 5.01 30.59 0.15 -3.13 16 20 C -0.09 -2.07 2.92 -10.79 -0.03 -2.10 16 21 C -0.14 -2.68 9.19 71.98 0.66 -2.02 16 22 C -0.15 -3.42 8.95 71.98 0.64 -2.77 16 23 N -0.59 -22.74 9.13 -185.44 -1.69 -24.43 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.19 4.85 8.06 -2.91 -0.02 4.82 16 30 H 0.14 5.43 6.16 -2.91 -0.02 5.42 16 31 H 0.05 1.99 7.13 -2.39 -0.02 1.98 16 32 H 0.04 1.74 5.47 -2.39 -0.01 1.73 16 33 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.07 2.53 6.50 -2.39 -0.02 2.51 16 35 H 0.07 2.66 7.33 -2.39 -0.02 2.64 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.04 1.19 6.57 -2.39 -0.02 1.17 16 Total: -1.00 -66.63 355.60 4.59 -62.04 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.90 Total: 24.07 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.96 Total: 0.77 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.15 Total: -129.64 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.88 Total: 42.76 kcal Total: -66.63 4.59 -62.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350005002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.826 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds