Wall clock time and date at job start Mon Mar 30 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46974 * 2 1 4 4 C 1.50706 * 109.47021 * 119.99541 * 2 1 3 5 5 C 1.35317 * 126.12367 * 145.00111 * 4 2 1 6 6 C 1.39874 * 107.91746 * 179.97438 * 5 4 2 7 7 C 1.50692 * 125.89699 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.50356 * 154.99929 * 7 6 5 9 9 C 1.53122 * 109.50946 * 34.91718 * 7 6 5 10 10 C 1.53119 * 109.16216 * 182.40826 * 9 7 6 11 11 C 1.53032 * 109.28163 * 57.65356 * 10 9 7 12 12 N 1.46845 * 109.52271 * 300.82265 * 11 10 9 13 13 C 1.46906 * 110.99756 * 185.83725 * 12 11 10 14 14 C 1.50700 * 109.47201 * 293.94869 * 13 12 11 15 15 H 1.07998 * 119.99791 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99904 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00242 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00108 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47166 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47430 * 120.00008 * 18 16 14 21 21 H 1.48504 * 109.47268 * 240.00391 * 18 16 14 22 22 C 1.46854 * 111.23626 * 61.72397 * 12 11 10 23 23 N 1.30836 * 108.20052 * 359.73987 * 6 5 4 24 24 N 1.34947 * 126.12670 * 324.97863 * 4 2 1 25 25 H 0.97001 * 126.03556 * 359.97438 * 24 4 2 26 26 H 1.08996 * 109.47572 * 300.00290 * 1 2 3 27 27 H 1.09000 * 109.47234 * 60.00604 * 1 2 3 28 28 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47572 * 239.99710 * 2 1 3 30 30 H 1.09007 * 109.47236 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47170 * 299.99708 * 3 2 1 32 32 H 1.09000 * 109.47660 * 59.99667 * 3 2 1 33 33 H 1.07999 * 126.04598 * 359.97438 * 5 4 2 34 34 H 1.08995 * 109.52100 * 302.31349 * 9 7 6 35 35 H 1.09001 * 109.52028 * 62.49978 * 9 7 6 36 36 H 1.08995 * 109.49971 * 177.59841 * 10 9 7 37 37 H 1.08997 * 109.49904 * 297.71308 * 10 9 7 38 38 H 1.09001 * 109.46041 * 60.83745 * 11 10 9 39 39 H 1.09000 * 109.46461 * 180.81177 * 11 10 9 40 40 H 1.09000 * 109.46982 * 53.95372 * 13 12 11 41 41 H 1.09001 * 109.46989 * 173.95378 * 13 12 11 42 42 H 0.97000 * 120.00346 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.49708 * 178.28466 * 22 12 11 44 44 H 1.08999 * 109.42784 * 58.30991 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 3.1423 -1.4801 1.3101 6 6 3.2480 -1.9485 2.6238 7 6 4.3377 -2.8415 3.1585 8 1 4.4350 -2.6930 4.2339 9 6 5.6630 -2.4977 2.4729 10 6 6.7515 -3.4491 2.9776 11 6 6.3297 -4.8933 2.6980 12 7 5.0574 -5.1729 3.3758 13 6 4.6911 -6.5895 3.2442 14 6 4.4031 -6.9017 1.7983 15 1 4.4845 -6.1256 1.0518 16 6 4.0367 -8.1784 1.4285 17 7 3.9381 -9.1236 2.3376 18 14 3.6804 -8.5656 -0.3638 19 1 3.8608 -7.3386 -1.1807 20 1 4.6143 -9.6182 -0.8381 21 1 2.2822 -9.0475 -0.4977 22 6 3.9853 -4.3035 2.8745 23 7 2.2408 -1.4723 3.3097 24 7 1.4559 -0.6923 2.4506 25 1 0.6441 -0.2191 2.6913 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.8259 -1.6949 0.5020 34 1 5.5543 -2.6081 1.3940 35 1 5.9393 -1.4701 2.7089 36 1 7.6879 -3.2370 2.4616 37 1 6.8870 -3.3107 4.0502 38 1 6.2078 -5.0346 1.6240 39 1 7.0961 -5.5738 3.0690 40 1 5.5152 -7.2118 3.5932 41 1 3.8035 -6.7924 3.8435 42 1 3.6807 -10.0219 2.0773 43 1 3.0496 -4.5551 3.3736 44 1 3.8740 -4.4481 1.7999 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352941638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:45 Heat of formation + Delta-G solvation = 48.485955 kcal Electronic energy + Delta-G solvation = -21965.389362 eV Core-core repulsion = 18917.999374 eV Total energy + Delta-G solvation = -3047.389987 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26669 -38.22852 -35.74315 -33.85161 -32.20017 -31.30643 -29.47323 -29.06330 -27.45825 -26.67201 -23.86525 -23.25381 -22.65103 -21.36916 -20.18763 -19.32199 -18.66233 -17.19470 -16.30945 -15.21369 -15.08408 -14.80391 -14.31577 -14.24212 -14.03082 -13.80351 -13.46618 -13.24936 -12.95587 -12.82180 -12.56414 -12.48134 -11.85898 -11.64919 -11.54392 -11.50399 -11.32411 -11.06458 -10.91350 -10.74773 -10.52313 -10.34851 -10.20388 -10.07043 -9.85893 -9.68452 -9.47708 -8.95387 -8.45386 -8.38786 -7.08645 -5.97880 -4.06770 2.00038 2.96369 2.97722 3.28626 3.36602 3.40103 4.34038 4.44076 4.54738 4.73442 4.80190 5.09874 5.22976 5.23436 5.31062 5.32999 5.44096 5.45050 5.47433 5.58072 5.64977 5.77285 5.87631 5.90050 5.90795 5.93695 6.09495 6.15701 6.24483 6.34010 6.42708 6.54919 6.63158 6.77512 6.86527 6.87482 6.99671 7.36729 7.40548 7.58698 7.90859 7.95411 8.13707 8.35467 8.39783 9.04179 9.59802 11.06980 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.004838 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.861351 B = 5786.638411 C = 6758.803744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.034 4.034 3 C -0.143 4.143 4 C 0.088 3.912 5 C -0.259 4.259 6 C 0.101 3.899 7 C -0.009 4.009 8 H 0.086 0.914 9 C -0.104 4.104 10 C -0.116 4.116 11 C 0.061 3.939 12 N -0.541 5.541 13 C 0.187 3.813 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.081 3.919 23 N -0.294 5.294 24 N -0.479 5.479 25 H 0.431 0.569 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.144 0.856 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.261 0.739 43 H 0.064 0.936 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 19.966 -4.145 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.054 4.054 3 C -0.201 4.201 4 C -0.041 4.041 5 C -0.288 4.288 6 C -0.066 4.066 7 C -0.030 4.030 8 H 0.104 0.896 9 C -0.143 4.143 10 C -0.154 4.154 11 C -0.067 4.067 12 N -0.265 5.265 13 C 0.062 3.938 14 C -0.585 4.585 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.715 3.285 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.048 4.048 23 N -0.116 5.116 24 N -0.187 5.187 25 H 0.275 0.725 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.176 19.904 -2.470 20.307 hybrid contribution -0.533 -0.386 -2.593 2.676 sum -3.709 19.518 -5.063 20.502 Atomic orbital electron populations 1.21883 0.94333 1.02610 1.02155 1.19852 0.95866 0.95839 0.93842 1.21838 1.01876 0.94460 1.01941 1.20937 0.95095 0.99820 0.88209 1.21129 1.01646 1.07585 0.98485 1.22359 0.95010 0.96771 0.92454 1.19706 0.89771 0.93252 1.00302 0.89608 1.21535 0.94059 0.98572 1.00085 1.21627 0.97015 0.95581 1.01213 1.21880 0.92946 0.94394 0.97499 1.62390 1.01706 1.07401 1.55014 1.19743 0.96772 0.81875 0.95416 1.21811 1.46766 0.95348 0.94600 0.92401 1.24955 0.95311 0.96385 0.97152 1.69956 1.47941 1.02216 1.32916 0.86623 0.77948 0.78327 0.85638 1.19852 1.20962 1.21016 1.21750 0.95093 0.88917 0.99077 1.77339 1.06150 1.12016 1.16137 1.46213 1.23747 1.41930 1.06772 0.72524 0.92932 0.91505 0.91899 0.88532 0.91888 0.91839 0.92785 0.83844 0.91962 0.92547 0.92285 0.91715 0.94527 0.91764 0.95064 0.95115 0.92935 0.91711 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.95 37.16 0.33 -0.78 16 2 C -0.03 -0.29 3.31 -91.77 -0.30 -0.60 16 3 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 4 C 0.09 1.08 5.91 -82.26 -0.49 0.59 16 5 C -0.26 -3.77 9.88 -40.01 -0.40 -4.17 16 6 C 0.10 1.68 6.13 -82.41 -0.51 1.17 16 7 C -0.01 -0.16 2.81 -91.69 -0.26 -0.42 16 8 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 9 C -0.10 -1.56 4.92 -26.61 -0.13 -1.69 16 10 C -0.12 -1.79 6.09 -26.65 -0.16 -1.96 16 11 C 0.06 1.20 5.14 -3.84 -0.02 1.18 16 12 N -0.54 -11.93 4.86 -236.10 -1.15 -13.07 16 13 C 0.19 4.94 5.13 -4.97 -0.03 4.91 16 14 C -0.55 -15.20 7.74 -34.44 -0.27 -15.46 16 15 H 0.06 1.60 5.84 -52.49 -0.31 1.30 16 16 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 17 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.08 1.68 4.28 -3.83 -0.02 1.66 16 23 N -0.29 -4.88 12.70 33.67 0.43 -4.45 16 24 N -0.48 -6.15 7.14 33.48 0.24 -5.91 16 25 H 0.43 4.19 8.19 -182.61 -1.49 2.69 16 26 H 0.05 0.34 7.45 -51.93 -0.39 -0.05 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.14 1.94 7.37 -52.49 -0.39 1.55 16 34 H 0.06 0.93 7.19 -51.93 -0.37 0.55 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.04 0.77 7.03 -51.93 -0.37 0.40 16 39 H 0.06 1.26 8.06 -51.93 -0.42 0.84 16 40 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 41 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.06 1.44 8.12 -51.93 -0.42 1.02 16 44 H 0.04 0.94 6.57 -51.93 -0.34 0.59 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -31.24 345.51 -10.25 -41.49 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.70 Total: 0.44 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.99 Total: -14.53 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.26 Total: -49.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.24 -10.25 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352941638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.974 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds