Wall clock time and date at job start Mon Mar 30 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46974 * 2 1 4 4 C 1.50706 * 109.47021 * 119.99541 * 2 1 3 5 5 C 1.35317 * 126.12367 * 145.00111 * 4 2 1 6 6 C 1.39874 * 107.91746 * 179.97438 * 5 4 2 7 7 C 1.50692 * 125.89699 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.50356 * 154.99929 * 7 6 5 9 9 C 1.53122 * 109.50946 * 34.91718 * 7 6 5 10 10 C 1.53119 * 109.16216 * 182.40826 * 9 7 6 11 11 C 1.53032 * 109.28163 * 57.65356 * 10 9 7 12 12 N 1.46845 * 109.52271 * 300.82265 * 11 10 9 13 13 C 1.46906 * 110.99756 * 185.83725 * 12 11 10 14 14 C 1.50700 * 109.47201 * 293.94869 * 13 12 11 15 15 H 1.07998 * 119.99791 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99904 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00242 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00108 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47166 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47430 * 120.00008 * 18 16 14 21 21 H 1.48504 * 109.47268 * 240.00391 * 18 16 14 22 22 C 1.46854 * 111.23626 * 61.72397 * 12 11 10 23 23 N 1.30836 * 108.20052 * 359.73987 * 6 5 4 24 24 N 1.34947 * 126.12670 * 324.97863 * 4 2 1 25 25 H 0.97001 * 126.03556 * 359.97438 * 24 4 2 26 26 H 1.08996 * 109.47572 * 300.00290 * 1 2 3 27 27 H 1.09000 * 109.47234 * 60.00604 * 1 2 3 28 28 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47572 * 239.99710 * 2 1 3 30 30 H 1.09007 * 109.47236 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47170 * 299.99708 * 3 2 1 32 32 H 1.09000 * 109.47660 * 59.99667 * 3 2 1 33 33 H 1.07999 * 126.04598 * 359.97438 * 5 4 2 34 34 H 1.08995 * 109.52100 * 302.31349 * 9 7 6 35 35 H 1.09001 * 109.52028 * 62.49978 * 9 7 6 36 36 H 1.08995 * 109.49971 * 177.59841 * 10 9 7 37 37 H 1.08997 * 109.49904 * 297.71308 * 10 9 7 38 38 H 1.09001 * 109.46041 * 60.83745 * 11 10 9 39 39 H 1.09000 * 109.46461 * 180.81177 * 11 10 9 40 40 H 1.09000 * 109.46982 * 53.95372 * 13 12 11 41 41 H 1.09001 * 109.46989 * 173.95378 * 13 12 11 42 42 H 0.97000 * 120.00346 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.49708 * 178.28466 * 22 12 11 44 44 H 1.08999 * 109.42784 * 58.30991 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 3.1423 -1.4801 1.3101 6 6 3.2480 -1.9485 2.6238 7 6 4.3377 -2.8415 3.1585 8 1 4.4350 -2.6930 4.2339 9 6 5.6630 -2.4977 2.4729 10 6 6.7515 -3.4491 2.9776 11 6 6.3297 -4.8933 2.6980 12 7 5.0574 -5.1729 3.3758 13 6 4.6911 -6.5895 3.2442 14 6 4.4031 -6.9017 1.7983 15 1 4.4845 -6.1256 1.0518 16 6 4.0367 -8.1784 1.4285 17 7 3.9381 -9.1236 2.3376 18 14 3.6804 -8.5656 -0.3638 19 1 3.8608 -7.3386 -1.1807 20 1 4.6143 -9.6182 -0.8381 21 1 2.2822 -9.0475 -0.4977 22 6 3.9853 -4.3035 2.8745 23 7 2.2408 -1.4723 3.3097 24 7 1.4559 -0.6923 2.4506 25 1 0.6441 -0.2191 2.6913 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.8259 -1.6949 0.5020 34 1 5.5543 -2.6081 1.3940 35 1 5.9393 -1.4701 2.7089 36 1 7.6879 -3.2370 2.4616 37 1 6.8870 -3.3107 4.0502 38 1 6.2078 -5.0346 1.6240 39 1 7.0961 -5.5738 3.0690 40 1 5.5152 -7.2118 3.5932 41 1 3.8035 -6.7924 3.8435 42 1 3.6807 -10.0219 2.0773 43 1 3.0496 -4.5551 3.3736 44 1 3.8740 -4.4481 1.7999 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352941638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:45 Heat of formation + Delta-G solvation = 28.446001 kcal Electronic energy + Delta-G solvation = -21966.258359 eV Core-core repulsion = 18917.999374 eV Total energy + Delta-G solvation = -3048.258985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.37279 -39.80747 -36.59711 -35.57250 -34.00278 -32.77591 -30.64009 -30.26372 -28.70016 -28.01948 -25.73785 -24.61219 -23.62270 -23.04037 -21.34788 -20.67589 -20.03104 -18.44678 -18.13190 -16.91846 -16.15165 -16.02738 -15.97590 -15.49340 -15.28372 -14.94663 -14.89908 -14.55974 -14.32295 -14.07547 -13.77204 -13.47307 -13.32860 -13.06524 -12.98380 -12.83870 -12.47316 -12.39609 -12.15640 -12.13546 -12.01081 -11.96108 -11.78999 -11.59419 -11.44613 -11.30196 -11.09410 -10.61431 -10.18944 -9.53853 -9.00457 -8.14828 -6.35166 0.92908 1.35278 1.35974 1.48274 1.78782 1.96425 2.36990 3.09327 3.30772 3.55962 3.72837 3.91927 3.99610 4.10823 4.17500 4.26064 4.45181 4.46808 4.56423 4.63010 4.71148 4.75006 4.76687 4.85828 4.92361 4.95549 4.98862 5.02528 5.10886 5.13881 5.16156 5.26417 5.28084 5.31859 5.35592 5.37162 5.40159 5.56563 5.68445 5.74659 6.05924 6.27056 6.46084 6.58133 6.76792 6.85921 7.36326 8.87619 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.004838 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.861351 B = 5786.638411 C = 6758.803744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.032 4.032 3 C -0.139 4.139 4 C 0.106 3.894 5 C -0.283 4.283 6 C 0.084 3.916 7 C 0.001 3.999 8 H 0.079 0.921 9 C -0.097 4.097 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.543 5.543 13 C 0.200 3.800 14 C -0.554 4.554 15 H 0.057 0.943 16 C 0.010 3.990 17 N -0.928 5.928 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.280 1.280 22 C 0.092 3.908 23 N -0.330 5.330 24 N -0.468 5.468 25 H 0.445 0.555 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.152 0.848 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.009 0.991 41 H -0.002 1.002 42 H 0.265 0.735 43 H 0.036 0.964 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 22.422 -6.245 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.024 4.024 5 C -0.312 4.312 6 C -0.082 4.082 7 C -0.020 4.020 8 H 0.097 0.903 9 C -0.135 4.135 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.266 5.266 13 C 0.073 3.927 14 C -0.593 4.593 15 H 0.076 0.924 16 C -0.189 4.189 17 N -0.568 5.568 18 Si 0.782 3.218 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.205 1.205 22 C -0.038 4.038 23 N -0.153 5.153 24 N -0.177 5.177 25 H 0.291 0.709 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.169 0.831 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.027 0.973 41 H 0.016 0.984 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.168 22.386 -4.558 23.063 hybrid contribution -0.595 -1.120 -1.906 2.289 sum -3.763 21.266 -6.464 22.543 Atomic orbital electron populations 1.21895 0.93136 1.02167 1.03696 1.20014 0.96819 0.96442 0.91971 1.21816 1.01516 0.93289 1.03064 1.21485 0.93816 0.98242 0.88854 1.21318 1.03140 1.08809 0.97955 1.22291 0.95074 0.97315 0.93523 1.19523 0.91609 0.90555 1.00290 0.90293 1.21514 0.92306 0.99794 0.99899 1.21588 0.98411 0.92262 1.02114 1.21980 0.91246 0.97505 0.96080 1.62328 1.03243 1.05192 1.55844 1.19401 0.94413 0.84442 0.94414 1.22004 1.46677 0.95575 0.95054 0.92439 1.25840 0.94988 0.96192 1.01867 1.70081 1.48709 1.02728 1.35238 0.85512 0.77900 0.78401 0.79945 1.18970 1.20016 1.20529 1.21615 0.93630 0.91339 0.97174 1.77246 1.06921 1.13442 1.17721 1.46206 1.23767 1.41104 1.06648 0.70920 0.91993 0.89485 0.93314 0.87970 0.92466 0.89731 0.92683 0.83064 0.91704 0.89871 0.89090 0.91123 0.96133 0.92297 0.97322 0.98404 0.92617 0.94519 0.95924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.95 71.98 0.64 -1.15 16 2 C -0.03 -0.47 3.31 -11.54 -0.04 -0.51 16 3 C -0.14 -1.58 9.17 71.98 0.66 -0.92 16 4 C 0.11 2.42 5.91 41.41 0.24 2.66 16 5 C -0.28 -7.94 9.88 21.99 0.22 -7.73 16 6 C 0.08 2.77 6.13 43.10 0.26 3.03 16 7 C 0.00 0.04 2.81 -11.49 -0.03 0.01 16 8 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 9 C -0.10 -2.72 4.92 30.67 0.15 -2.57 16 10 C -0.11 -3.06 6.09 30.64 0.19 -2.88 16 11 C 0.06 2.36 5.14 86.32 0.44 2.80 16 12 N -0.54 -24.82 4.86 -900.89 -4.37 -29.20 16 13 C 0.20 11.11 5.13 85.56 0.44 11.55 16 14 C -0.55 -31.78 7.74 25.60 0.20 -31.58 16 15 H 0.06 3.25 5.84 -2.91 -0.02 3.23 16 16 C 0.01 0.59 5.46 84.65 0.46 1.05 16 17 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 18 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 C 0.09 3.96 4.28 86.33 0.37 4.33 16 23 N -0.33 -10.91 12.70 -47.39 -0.60 -11.51 16 24 N -0.47 -11.45 7.14 -48.00 -0.34 -11.80 16 25 H 0.44 7.94 8.19 -213.33 -1.75 6.19 16 26 H 0.06 0.61 7.45 -2.39 -0.02 0.60 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.15 3.88 7.37 -2.91 -0.02 3.86 16 34 H 0.06 1.81 7.19 -2.39 -0.02 1.79 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.02 0.87 7.03 -2.39 -0.02 0.85 16 39 H 0.06 2.34 8.06 -2.39 -0.02 2.32 16 40 H 0.01 0.51 8.06 -2.39 -0.02 0.49 16 41 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.04 1.73 8.12 -2.39 -0.02 1.72 16 44 H 0.02 1.05 6.57 -2.39 -0.02 1.03 16 Total: -1.00 -69.66 345.51 0.43 -69.23 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.77 Total: 14.77 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.21 Total: -21.91 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -5.03 Total: -108.91 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.66 0.43 -69.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352941638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.679 kcal (2) G-P(sol) polarization free energy of solvation -69.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds