Wall clock time and date at job start Mon Mar 30 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47451 * 2 1 4 4 C 1.50701 * 109.47151 * 120.00364 * 2 1 3 5 5 C 1.35315 * 126.13091 * 144.99852 * 4 2 1 6 6 C 1.39866 * 107.92319 * 179.97438 * 5 4 2 7 7 C 1.50700 * 125.90090 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.50078 * 205.07269 * 7 6 5 9 9 C 1.53124 * 109.53147 * 325.17128 * 7 6 5 10 10 C 1.53118 * 109.15869 * 177.61880 * 9 7 6 11 11 C 1.53033 * 109.27675 * 302.34243 * 10 9 7 12 12 N 1.46850 * 109.52298 * 59.18441 * 11 10 9 13 13 C 1.46903 * 111.00039 * 174.15831 * 12 11 10 14 14 C 1.50694 * 109.47066 * 294.20725 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99854 * 179.72538 * 16 14 13 19 19 H 1.48504 * 109.47032 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46816 * 120.00323 * 18 16 14 21 21 H 1.48495 * 109.46630 * 240.00111 * 18 16 14 22 22 C 1.46845 * 111.19474 * 298.25597 * 12 11 10 23 23 N 1.30845 * 108.19901 * 0.25924 * 6 5 4 24 24 N 1.34949 * 126.12264 * 324.95652 * 4 2 1 25 25 H 0.96994 * 126.04051 * 0.03739 * 24 4 2 26 26 H 1.09000 * 109.47564 * 299.99983 * 1 2 3 27 27 H 1.09005 * 109.47010 * 60.00290 * 1 2 3 28 28 H 1.09001 * 109.47323 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47061 * 239.99949 * 2 1 3 30 30 H 1.09000 * 109.47127 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46841 * 300.00346 * 3 2 1 32 32 H 1.08997 * 109.46342 * 59.99859 * 3 2 1 33 33 H 1.08005 * 126.03710 * 359.94411 * 5 4 2 34 34 H 1.09005 * 109.52208 * 297.52048 * 9 7 6 35 35 H 1.08997 * 109.52473 * 57.64890 * 9 7 6 36 36 H 1.09006 * 109.50456 * 62.28563 * 10 9 7 37 37 H 1.08998 * 109.50237 * 182.40546 * 10 9 7 38 38 H 1.08991 * 109.46713 * 299.16310 * 11 10 9 39 39 H 1.09001 * 109.46200 * 179.19244 * 11 10 9 40 40 H 1.08998 * 109.46809 * 174.20826 * 13 12 11 41 41 H 1.09002 * 109.47056 * 54.20567 * 13 12 11 42 42 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.46193 * 181.75793 * 22 12 11 44 44 H 1.09003 * 109.46368 * 301.73466 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 3.1423 -1.4803 1.3099 6 6 3.2480 -1.9488 2.6236 7 6 4.3377 -2.8420 3.1582 8 1 3.9651 -3.3938 4.0212 9 6 4.7719 -3.8275 2.0697 10 6 5.9192 -4.6907 2.6020 11 6 7.0737 -3.7847 3.0359 12 7 6.6077 -2.8613 4.0784 13 6 7.7220 -2.0701 4.6173 14 6 8.6812 -2.9805 5.3399 15 1 8.4831 -4.0409 5.3931 16 6 9.8123 -2.4599 5.9322 17 7 10.0538 -1.1688 5.8669 18 14 10.9973 -3.5874 6.8344 19 1 10.4982 -4.9845 6.7690 20 1 12.3363 -3.5102 6.1970 21 1 11.0996 -3.1638 8.2540 22 6 5.5380 -1.9897 3.5761 23 7 2.2346 -1.4817 3.3068 24 7 1.4561 -0.6923 2.4506 25 1 0.6441 -0.2195 2.6912 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.8256 -1.6954 0.5017 34 1 3.9306 -4.4660 1.7998 35 1 5.1070 -3.2759 1.1914 36 1 5.5715 -5.2716 3.4563 37 1 6.2613 -5.3654 1.8173 38 1 7.4299 -3.2143 2.1783 39 1 7.8866 -4.3954 3.4288 40 1 7.3355 -1.3245 5.3121 41 1 8.2415 -1.5703 3.7997 42 1 10.8497 -0.8026 6.2833 43 1 5.2355 -1.2966 4.3612 44 1 5.9013 -1.4277 2.7157 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352941639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:47 Heat of formation + Delta-G solvation = 28.714369 kcal Electronic energy + Delta-G solvation = -21613.555770 eV Core-core repulsion = 18565.308422 eV Total energy + Delta-G solvation = -3048.247348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.39087 -39.78321 -36.59560 -35.56433 -34.04160 -32.81006 -30.71519 -30.30139 -28.92899 -28.02165 -25.60099 -24.57441 -23.58890 -23.13792 -21.37295 -20.68430 -19.98486 -18.43743 -18.14177 -16.95878 -16.23159 -16.10210 -15.72457 -15.65549 -15.30560 -15.11113 -14.86802 -14.43454 -14.30071 -14.10210 -13.82617 -13.75251 -13.43564 -13.08771 -12.99158 -12.65277 -12.55429 -12.50597 -12.13969 -12.09753 -12.04797 -11.98746 -11.67856 -11.60368 -11.41892 -11.20114 -11.08433 -10.61935 -10.21977 -9.55454 -9.00295 -8.20104 -6.30546 0.91537 1.41440 1.42628 1.56577 1.76724 1.94887 2.41260 3.11929 3.24314 3.54484 3.69731 3.90927 3.95499 4.03843 4.17272 4.23917 4.39962 4.43742 4.45676 4.60489 4.68899 4.69571 4.75291 4.80327 4.84444 4.91462 4.92872 4.96348 5.06962 5.10638 5.14569 5.18427 5.24425 5.28037 5.34085 5.36838 5.39764 5.55273 5.66665 5.67198 6.05526 6.37719 6.45001 6.64525 6.75328 6.86327 7.39236 8.91677 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.003437 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.914078 B = 8143.963601 C = 8537.577187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.030 4.030 3 C -0.144 4.144 4 C 0.106 3.894 5 C -0.281 4.281 6 C 0.083 3.917 7 C 0.004 3.996 8 H 0.076 0.924 9 C -0.096 4.096 10 C -0.107 4.107 11 C 0.061 3.939 12 N -0.543 5.543 13 C 0.209 3.791 14 C -0.521 4.521 15 H 0.066 0.934 16 C -0.001 4.001 17 N -0.937 5.937 18 Si 0.973 3.027 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.280 1.280 22 C 0.078 3.922 23 N -0.331 5.331 24 N -0.468 5.468 25 H 0.445 0.555 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.156 0.844 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.016 0.984 39 H 0.064 0.936 40 H -0.004 1.004 41 H -0.038 1.038 42 H 0.264 0.736 43 H 0.043 0.957 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.211 0.277 -15.681 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.050 4.050 3 C -0.202 4.202 4 C -0.024 4.024 5 C -0.310 4.310 6 C -0.083 4.083 7 C -0.017 4.017 8 H 0.095 0.905 9 C -0.134 4.134 10 C -0.145 4.145 11 C -0.067 4.067 12 N -0.268 5.268 13 C 0.082 3.918 14 C -0.559 4.559 15 H 0.084 0.916 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.185 1.185 20 H -0.202 1.202 21 H -0.205 1.205 22 C -0.052 4.052 23 N -0.155 5.155 24 N -0.177 5.177 25 H 0.291 0.709 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.174 0.826 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.034 0.966 39 H 0.083 0.917 40 H 0.014 0.986 41 H -0.021 1.021 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -19.866 0.156 -14.098 24.361 hybrid contribution 1.277 0.838 -0.267 1.551 sum -18.589 0.994 -14.365 23.514 Atomic orbital electron populations 1.21884 0.92757 1.02564 1.03500 1.20011 0.97053 0.95800 0.92141 1.21853 1.01227 0.94164 1.02981 1.21527 0.94139 0.97975 0.88782 1.21333 1.02734 1.09020 0.97934 1.22257 0.94672 0.97943 0.93464 1.19449 0.89540 0.93816 0.98919 0.90542 1.21526 0.98497 0.96765 0.96625 1.21592 0.94325 0.97311 1.01249 1.22033 0.98062 0.94949 0.91623 1.61932 1.10940 1.19831 1.34066 1.19348 0.87674 0.92283 0.92446 1.21491 1.05791 0.94839 1.33765 0.91582 1.25979 0.99952 0.96704 0.97264 1.70113 1.28097 1.13430 1.46124 0.85279 0.78070 0.79049 0.77890 1.18470 1.20220 1.20527 1.21851 0.92025 0.94270 0.97007 1.77278 1.07468 1.13124 1.17591 1.46233 1.24024 1.40706 1.06758 0.70928 0.92453 0.89592 0.92402 0.87214 0.93135 0.89525 0.93127 0.82625 0.89814 0.91049 0.91599 0.88907 0.96557 0.91743 0.98573 1.02082 0.92695 0.93801 0.96152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.95 71.98 0.64 -0.66 16 2 C -0.03 -0.37 3.31 -11.54 -0.04 -0.41 16 3 C -0.14 -1.76 9.18 71.98 0.66 -1.10 16 4 C 0.11 2.18 5.91 41.41 0.24 2.42 16 5 C -0.28 -7.13 9.88 21.99 0.22 -6.91 16 6 C 0.08 2.56 6.13 43.10 0.26 2.82 16 7 C 0.00 0.12 2.81 -11.49 -0.03 0.09 16 8 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 9 C -0.10 -2.57 4.92 30.67 0.15 -2.42 16 10 C -0.11 -3.14 6.09 30.64 0.19 -2.95 16 11 C 0.06 2.43 5.30 86.32 0.46 2.89 16 12 N -0.54 -25.23 4.65 -900.95 -4.19 -29.42 16 13 C 0.21 11.86 4.72 85.55 0.40 12.26 16 14 C -0.52 -30.60 8.43 25.60 0.22 -30.39 16 15 H 0.07 3.78 7.12 -2.91 -0.02 3.76 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 17 N -0.94 -58.19 13.29 21.45 0.28 -57.90 16 18 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 C 0.08 3.18 4.72 86.32 0.41 3.59 16 23 N -0.33 -10.48 12.70 -47.38 -0.60 -11.08 16 24 N -0.47 -10.69 7.14 -48.00 -0.34 -11.03 16 25 H 0.44 7.34 8.19 -213.34 -1.75 5.60 16 26 H 0.06 0.46 7.45 -2.39 -0.02 0.44 16 27 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.16 3.45 7.36 -2.91 -0.02 3.43 16 34 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.07 1.79 7.19 -2.39 -0.02 1.77 16 36 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 2.78 6.70 -2.39 -0.02 2.76 16 40 H 0.00 -0.24 7.99 -2.39 -0.02 -0.26 16 41 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 42 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.04 1.95 8.02 -2.38 -0.02 1.93 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -71.86 348.59 0.64 -71.22 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -0.78 Total: 11.27 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.25 Total: -20.39 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -4.85 Total: -109.43 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.86 0.64 -71.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352941639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.932 kcal (2) G-P(sol) polarization free energy of solvation -71.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds