Wall clock time and date at job start Mon Mar 30 2020 01:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46865 * 2 1 4 4 C 1.50694 * 109.46974 * 119.99945 * 2 1 3 5 5 C 1.38288 * 119.94516 * 300.00002 * 4 2 1 6 6 C 1.38123 * 120.05320 * 180.02562 * 5 4 2 7 7 C 1.38750 * 119.94782 * 0.02562 * 6 5 4 8 8 O 1.35897 * 120.05607 * 179.97438 * 7 6 5 9 9 C 1.38713 * 119.88672 * 359.97438 * 7 6 5 10 10 C 1.50704 * 120.02625 * 179.97438 * 9 7 6 11 11 N 1.46899 * 109.46888 * 74.89516 * 10 9 7 12 12 C 1.46897 * 110.99849 * 69.18009 * 11 10 9 13 13 C 1.46902 * 110.99648 * 193.12947 * 11 10 9 14 14 H 1.09004 * 109.47301 * 300.00046 * 13 11 10 15 15 C 1.52998 * 109.47354 * 60.00256 * 13 11 10 16 16 C 1.50700 * 109.46981 * 180.02562 * 13 11 10 17 17 H 1.07995 * 120.00192 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99954 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00043 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 119.99869 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47498 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47155 * 119.99935 * 20 18 16 23 23 H 1.48505 * 109.47234 * 240.00001 * 20 18 16 24 24 C 1.38160 * 119.94456 * 0.25815 * 9 7 6 25 25 H 1.08995 * 109.46916 * 299.99827 * 1 2 3 26 26 H 1.09003 * 109.46949 * 60.00317 * 1 2 3 27 27 H 1.09000 * 109.46754 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46916 * 240.00173 * 2 1 3 29 29 H 1.09001 * 109.47433 * 59.99970 * 3 2 1 30 30 H 1.08996 * 109.47096 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47221 * 300.00372 * 3 2 1 32 32 H 1.07995 * 119.97397 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.02423 * 179.97438 * 6 5 4 34 34 H 0.96699 * 114.00000 * 265.65602 * 8 7 6 35 35 H 1.09005 * 109.46580 * 314.89626 * 10 9 7 36 36 H 1.08999 * 109.47050 * 194.89858 * 10 9 7 37 37 H 1.09002 * 109.46826 * 189.62425 * 12 11 10 38 38 H 1.09006 * 109.47087 * 309.61721 * 12 11 10 39 39 H 1.08996 * 109.47485 * 69.62053 * 12 11 10 40 40 H 1.08994 * 109.47245 * 180.02562 * 15 13 11 41 41 H 1.09004 * 109.47088 * 59.99660 * 15 13 11 42 42 H 1.09001 * 109.46788 * 300.00183 * 15 13 11 43 43 H 0.97000 * 120.00118 * 179.97438 * 19 18 16 44 44 H 1.08001 * 119.97414 * 179.74515 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6976 -0.2369 2.4859 6 6 2.1572 -0.8860 3.6151 7 6 2.9558 -2.0136 3.4892 8 8 3.4096 -2.6536 4.5988 9 6 3.2902 -2.4865 2.2288 10 6 4.1579 -3.7106 2.0884 11 7 3.3686 -4.9090 2.4028 12 6 2.3557 -5.1585 1.3685 13 6 4.2377 -6.0797 2.5818 14 1 4.7972 -6.2606 1.6640 15 6 5.2135 -5.8196 3.7311 16 6 3.3944 -7.2870 2.9017 17 1 2.3204 -7.1939 2.9661 18 6 3.9942 -8.5106 3.1123 19 7 5.3020 -8.6241 3.0334 20 14 2.9489 -10.0072 3.5081 21 1 1.5165 -9.6168 3.5380 22 1 3.1576 -11.0460 2.4676 23 1 3.3416 -10.5487 4.8340 24 6 2.8319 -1.8309 1.1023 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.0770 0.6415 2.5834 33 1 1.8957 -0.5156 4.5954 34 1 4.2913 -2.3743 4.8810 35 1 5.0004 -3.6396 2.7764 36 1 4.5287 -3.7778 1.0656 37 1 1.6778 -5.9427 1.7056 38 1 1.7910 -4.2443 1.1849 39 1 2.8465 -5.4735 0.4477 40 1 5.8586 -6.6880 3.8636 41 1 4.6540 -5.6386 4.6489 42 1 5.8233 -4.9463 3.4993 43 1 5.7240 -9.4849 3.1819 44 1 3.0954 -2.1963 0.1207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461899365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:38 Heat of formation + Delta-G solvation = -23.935763 kcal Electronic energy + Delta-G solvation = -22072.913791 eV Core-core repulsion = 18990.090612 eV Total energy + Delta-G solvation = -3082.823180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92978 -37.29516 -36.69281 -34.47330 -32.89300 -31.14557 -29.09314 -28.78375 -27.26628 -26.61819 -24.61065 -23.49813 -22.58381 -21.91035 -19.78800 -19.02742 -17.90942 -16.26212 -16.05979 -15.63042 -15.20625 -14.77096 -14.17337 -14.05639 -13.81582 -13.64188 -13.47863 -13.32836 -12.72228 -12.43908 -12.39390 -12.27321 -11.83392 -11.80122 -11.64950 -11.18647 -11.06664 -11.01490 -10.89936 -10.84427 -10.60751 -10.43776 -10.11096 -10.03514 -9.96834 -9.70039 -8.86011 -8.60701 -8.37582 -8.10323 -7.05308 -5.96535 -3.99975 1.47233 1.54782 3.32893 3.40540 3.45959 3.80118 4.45871 4.53550 4.66024 4.73759 5.08239 5.10589 5.15232 5.23331 5.34666 5.41889 5.45123 5.47728 5.61221 5.68499 5.79532 5.82930 5.97336 6.01526 6.08993 6.12336 6.18808 6.26714 6.33610 6.47338 6.51732 6.73762 6.80822 6.86815 6.91542 7.05707 7.12593 7.21681 7.57711 7.79181 7.89265 8.07697 8.28423 8.39035 8.67358 9.07139 9.64748 11.10431 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.004124 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.602096 B = 6788.673947 C = 7142.144608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.142 4.142 4 C -0.093 4.093 5 C -0.108 4.108 6 C -0.148 4.148 7 C 0.128 3.872 8 O -0.478 6.478 9 C -0.088 4.088 10 C 0.091 3.909 11 N -0.521 5.521 12 C 0.040 3.960 13 C 0.212 3.788 14 H -0.005 1.005 15 C -0.130 4.130 16 C -0.498 4.498 17 H 0.063 0.937 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.284 1.284 24 C -0.101 4.101 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.381 0.619 35 H 0.082 0.918 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.011 0.989 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.005 0.995 43 H 0.259 0.741 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 18.767 -3.937 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.093 4.093 5 C -0.127 4.127 6 C -0.167 4.167 7 C 0.082 3.918 8 O -0.287 6.287 9 C -0.089 4.089 10 C -0.036 4.036 11 N -0.246 5.246 12 C -0.108 4.108 13 C 0.107 3.893 14 H 0.013 0.987 15 C -0.188 4.188 16 C -0.537 4.537 17 H 0.081 0.919 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.119 4.119 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.236 0.764 35 H 0.100 0.900 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.024 0.976 43 H 0.069 0.931 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.145 18.388 -3.498 19.412 hybrid contribution 0.377 -0.861 -0.471 1.051 sum -4.768 17.527 -3.969 18.593 Atomic orbital electron populations 1.21856 0.94507 1.02153 1.01567 1.20074 0.95827 0.95799 0.95575 1.21849 1.01201 0.95311 1.01614 1.19729 0.98787 0.96282 0.94484 1.20682 1.00520 0.99918 0.91543 1.21333 1.00882 0.95496 0.98993 1.18271 0.96757 0.90755 0.85985 1.84957 1.36961 1.64370 1.42420 1.20416 0.99146 0.96915 0.92455 1.20950 0.94956 0.88896 0.98845 1.62125 1.15685 1.03549 1.43197 1.22177 0.96046 0.99886 0.92712 1.19267 0.90244 0.86046 0.93767 0.98721 1.21829 0.98849 0.99114 0.99008 1.21198 0.93629 0.91943 1.46881 0.91882 1.24924 0.94971 0.98847 0.95568 1.69905 1.08519 1.24445 1.50622 0.86476 0.80639 0.82677 0.77836 1.19762 1.21225 1.21054 1.20873 0.97889 0.95211 0.97951 0.92554 0.92661 0.92391 0.90650 0.92566 0.92588 0.92658 0.86410 0.85946 0.76426 0.89986 0.95609 0.91092 0.93952 0.97092 0.89851 0.94302 0.97579 0.93145 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.01 37.16 0.33 -0.97 16 2 C -0.05 -0.54 3.09 -91.77 -0.28 -0.82 16 3 C -0.14 -1.19 9.01 37.16 0.33 -0.86 16 4 C -0.09 -1.15 4.78 -104.60 -0.50 -1.65 16 5 C -0.11 -1.32 8.70 -39.61 -0.34 -1.66 16 6 C -0.15 -2.01 9.99 -39.43 -0.39 -2.41 16 7 C 0.13 2.03 6.68 -39.22 -0.26 1.76 16 8 O -0.48 -7.83 12.84 -19.42 -0.25 -8.08 16 9 C -0.09 -1.45 4.57 -104.47 -0.48 -1.92 16 10 C 0.09 1.72 4.55 -4.97 -0.02 1.70 16 11 N -0.52 -11.67 4.59 -237.73 -1.09 -12.76 16 12 C 0.04 0.85 9.03 60.06 0.54 1.39 16 13 C 0.21 5.49 2.05 -68.86 -0.14 5.35 16 14 H 0.00 -0.13 8.14 -51.93 -0.42 -0.56 16 15 C -0.13 -3.21 8.78 37.16 0.33 -2.88 16 16 C -0.50 -13.99 7.98 -34.44 -0.27 -14.26 16 17 H 0.06 1.79 6.41 -52.49 -0.34 1.46 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 19 N -0.90 -25.85 11.32 55.43 0.63 -25.23 16 20 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.10 -1.44 8.52 -39.61 -0.34 -1.78 16 25 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 29 H 0.06 0.45 7.38 -51.93 -0.38 0.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.12 1.17 7.09 -52.49 -0.37 0.80 16 33 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.38 4.47 9.06 45.56 0.41 4.88 16 35 H 0.08 1.53 5.58 -51.93 -0.29 1.24 16 36 H 0.03 0.48 7.89 -51.93 -0.41 0.07 16 37 H 0.07 1.59 6.45 -51.93 -0.34 1.25 16 38 H 0.04 0.80 6.55 -51.93 -0.34 0.46 16 39 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 40 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.01 0.12 6.14 -51.93 -0.32 -0.20 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.12 1.59 7.88 -52.49 -0.41 1.18 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -30.86 346.78 -8.51 -39.37 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.41 Total: 2.18 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.60 Total: -17.48 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.46 Total: -37.99 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.25 Total: -8.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.86 -8.51 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461899365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.435 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds