Wall clock time and date at job start Mon Mar 30 2020 01:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46865 * 2 1 4 4 C 1.50694 * 109.46974 * 119.99945 * 2 1 3 5 5 C 1.38288 * 119.94516 * 300.00002 * 4 2 1 6 6 C 1.38123 * 120.05320 * 180.02562 * 5 4 2 7 7 C 1.38750 * 119.94782 * 0.02562 * 6 5 4 8 8 O 1.35897 * 120.05607 * 179.97438 * 7 6 5 9 9 C 1.38713 * 119.88672 * 359.97438 * 7 6 5 10 10 C 1.50704 * 120.02625 * 179.97438 * 9 7 6 11 11 N 1.46899 * 109.46888 * 74.89516 * 10 9 7 12 12 C 1.46897 * 110.99849 * 69.18009 * 11 10 9 13 13 C 1.46902 * 110.99648 * 193.12947 * 11 10 9 14 14 H 1.09004 * 109.47301 * 300.00046 * 13 11 10 15 15 C 1.52998 * 109.47354 * 60.00256 * 13 11 10 16 16 C 1.50700 * 109.46981 * 180.02562 * 13 11 10 17 17 H 1.07995 * 120.00192 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99954 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00043 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 119.99869 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47498 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47155 * 119.99935 * 20 18 16 23 23 H 1.48505 * 109.47234 * 240.00001 * 20 18 16 24 24 C 1.38160 * 119.94456 * 0.25815 * 9 7 6 25 25 H 1.08995 * 109.46916 * 299.99827 * 1 2 3 26 26 H 1.09003 * 109.46949 * 60.00317 * 1 2 3 27 27 H 1.09000 * 109.46754 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46916 * 240.00173 * 2 1 3 29 29 H 1.09001 * 109.47433 * 59.99970 * 3 2 1 30 30 H 1.08996 * 109.47096 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47221 * 300.00372 * 3 2 1 32 32 H 1.07995 * 119.97397 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.02423 * 179.97438 * 6 5 4 34 34 H 0.96699 * 114.00000 * 265.65602 * 8 7 6 35 35 H 1.09005 * 109.46580 * 314.89626 * 10 9 7 36 36 H 1.08999 * 109.47050 * 194.89858 * 10 9 7 37 37 H 1.09002 * 109.46826 * 189.62425 * 12 11 10 38 38 H 1.09006 * 109.47087 * 309.61721 * 12 11 10 39 39 H 1.08996 * 109.47485 * 69.62053 * 12 11 10 40 40 H 1.08994 * 109.47245 * 180.02562 * 15 13 11 41 41 H 1.09004 * 109.47088 * 59.99660 * 15 13 11 42 42 H 1.09001 * 109.46788 * 300.00183 * 15 13 11 43 43 H 0.97000 * 120.00118 * 179.97438 * 19 18 16 44 44 H 1.08001 * 119.97414 * 179.74515 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6976 -0.2369 2.4859 6 6 2.1572 -0.8860 3.6151 7 6 2.9558 -2.0136 3.4892 8 8 3.4096 -2.6536 4.5988 9 6 3.2902 -2.4865 2.2288 10 6 4.1579 -3.7106 2.0884 11 7 3.3686 -4.9090 2.4028 12 6 2.3557 -5.1585 1.3685 13 6 4.2377 -6.0797 2.5818 14 1 4.7972 -6.2606 1.6640 15 6 5.2135 -5.8196 3.7311 16 6 3.3944 -7.2870 2.9017 17 1 2.3204 -7.1939 2.9661 18 6 3.9942 -8.5106 3.1123 19 7 5.3020 -8.6241 3.0334 20 14 2.9489 -10.0072 3.5081 21 1 1.5165 -9.6168 3.5380 22 1 3.1576 -11.0460 2.4676 23 1 3.3416 -10.5487 4.8340 24 6 2.8319 -1.8309 1.1023 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.0770 0.6415 2.5834 33 1 1.8957 -0.5156 4.5954 34 1 4.2913 -2.3743 4.8810 35 1 5.0004 -3.6396 2.7764 36 1 4.5287 -3.7778 1.0656 37 1 1.6778 -5.9427 1.7056 38 1 1.7910 -4.2443 1.1849 39 1 2.8465 -5.4735 0.4477 40 1 5.8586 -6.6880 3.8636 41 1 4.6540 -5.6386 4.6489 42 1 5.8233 -4.9463 3.4993 43 1 5.7240 -9.4849 3.1819 44 1 3.0954 -2.1963 0.1207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461899365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:37 Heat of formation + Delta-G solvation = -43.352304 kcal Electronic energy + Delta-G solvation = -22073.755756 eV Core-core repulsion = 18990.090612 eV Total energy + Delta-G solvation = -3083.665144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05746 -38.65611 -38.11493 -35.55197 -34.74907 -32.54497 -30.88892 -29.99553 -28.22166 -27.91706 -26.54739 -25.06384 -23.67418 -23.09504 -21.43587 -20.29958 -19.07478 -18.34357 -17.24573 -16.94098 -16.68763 -16.03867 -15.80992 -15.53189 -15.19531 -14.82526 -14.66098 -14.27581 -14.20427 -13.92156 -13.56102 -13.49325 -13.14085 -12.99089 -12.92677 -12.87041 -12.68210 -12.51487 -12.43673 -12.08950 -11.99001 -11.91365 -11.83894 -11.64132 -11.45551 -11.12508 -10.88602 -10.52753 -9.72711 -9.20861 -8.87546 -8.11416 -6.22713 0.39824 0.45408 1.39661 1.41515 1.53657 2.41933 2.72444 3.16607 3.45331 3.52210 3.80599 3.87435 3.98640 4.21512 4.33136 4.38323 4.47910 4.50660 4.58493 4.66541 4.69657 4.74324 4.87159 4.91949 4.97777 5.03638 5.04920 5.05750 5.09077 5.17745 5.20798 5.24383 5.36635 5.45319 5.48509 5.52353 5.67820 5.73452 5.75904 5.81821 6.02604 6.27313 6.41441 6.75191 6.91840 7.03092 7.46227 8.94659 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.004124 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.602096 B = 6788.673947 C = 7142.144608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.139 4.139 4 C -0.088 4.088 5 C -0.099 4.099 6 C -0.150 4.150 7 C 0.110 3.890 8 O -0.501 6.501 9 C -0.110 4.110 10 C 0.097 3.903 11 N -0.529 5.529 12 C 0.048 3.952 13 C 0.217 3.783 14 H -0.040 1.040 15 C -0.115 4.115 16 C -0.517 4.517 17 H 0.054 0.946 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.959 3.041 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.108 4.108 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.396 0.604 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.006 0.994 40 H 0.058 0.942 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.960 20.655 -4.137 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.197 4.197 4 C -0.088 4.088 5 C -0.117 4.117 6 C -0.168 4.168 7 C 0.065 3.935 8 O -0.312 6.312 9 C -0.111 4.111 10 C -0.031 4.031 11 N -0.253 5.253 12 C -0.100 4.100 13 C 0.110 3.890 14 H -0.022 1.022 15 C -0.173 4.173 16 C -0.556 4.556 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.127 4.127 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.253 0.747 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.592 20.298 -3.701 21.660 hybrid contribution 0.826 -1.341 -0.446 1.637 sum -5.766 18.957 -4.147 20.244 Atomic orbital electron populations 1.21852 0.93660 1.01649 1.02782 1.20136 0.96427 0.96523 0.94200 1.21829 1.00869 0.94200 1.02768 1.20035 0.97524 0.95404 0.95882 1.21033 0.99665 1.00220 0.90821 1.21544 1.00112 0.94750 1.00435 1.18485 0.97730 0.91766 0.85520 1.84900 1.38318 1.65211 1.42757 1.20229 1.00535 0.96636 0.93665 1.20892 0.95142 0.88569 0.98470 1.62053 1.15699 1.03409 1.44111 1.22088 0.95583 1.00342 0.92027 1.19073 0.90333 0.87159 0.92422 1.02215 1.21603 0.98363 0.99075 0.98224 1.21433 0.93454 0.93333 1.47341 0.92795 1.25687 0.96127 1.01535 0.95312 1.70022 1.09830 1.25201 1.50950 0.85487 0.79032 0.79193 0.77801 1.19498 1.20502 1.20445 1.20980 0.98318 0.95905 0.97447 0.91874 0.90996 0.93742 0.90705 0.91844 0.93133 0.91135 0.83481 0.84248 0.74685 0.90391 0.95774 0.92857 0.91705 0.97562 0.92302 0.95006 0.95024 0.92928 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.01 71.99 0.65 -1.50 16 2 C -0.05 -0.92 3.09 -11.54 -0.04 -0.96 16 3 C -0.14 -1.87 9.01 71.98 0.65 -1.22 16 4 C -0.09 -1.98 4.78 -19.85 -0.09 -2.08 16 5 C -0.10 -2.11 8.70 22.25 0.19 -1.92 16 6 C -0.15 -3.74 9.99 22.37 0.22 -3.52 16 7 C 0.11 3.40 6.68 22.51 0.15 3.55 16 8 O -0.50 -16.24 12.84 -92.39 -1.19 -17.43 16 9 C -0.11 -3.54 4.57 -19.77 -0.09 -3.63 16 10 C 0.10 3.68 4.55 85.56 0.39 4.07 16 11 N -0.53 -24.11 4.59 -906.03 -4.16 -28.27 16 12 C 0.05 2.06 9.03 127.69 1.15 3.21 16 13 C 0.22 11.54 2.05 44.17 0.09 11.63 16 14 H -0.04 -2.33 8.14 -2.39 -0.02 -2.35 16 15 C -0.11 -5.78 8.78 71.98 0.63 -5.15 16 16 C -0.52 -29.73 7.98 25.60 0.20 -29.52 16 17 H 0.05 3.14 6.41 -2.91 -0.02 3.12 16 18 C 0.01 0.67 5.30 84.65 0.45 1.12 16 19 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 20 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 C -0.11 -2.97 8.52 22.25 0.19 -2.78 16 25 H 0.06 0.87 7.38 -2.39 -0.02 0.85 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 1.29 7.87 -2.39 -0.02 1.27 16 29 H 0.06 0.76 7.38 -2.39 -0.02 0.75 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.15 2.27 7.09 -2.91 -0.02 2.25 16 33 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.40 9.26 9.06 -74.06 -0.67 8.59 16 35 H 0.08 2.95 5.58 -2.38 -0.01 2.94 16 36 H 0.02 0.91 7.89 -2.39 -0.02 0.89 16 37 H 0.05 2.43 6.45 -2.39 -0.02 2.42 16 38 H 0.06 2.44 6.55 -2.38 -0.02 2.42 16 39 H 0.01 0.25 8.12 -2.39 -0.02 0.23 16 40 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 41 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.03 1.38 6.14 -2.39 -0.01 1.36 16 43 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.12 3.17 7.88 -2.91 -0.02 3.15 16 Total: -1.00 -66.57 346.78 1.99 -64.59 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.31 Total: 16.54 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 4.75 Total: -28.70 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -3.92 Total: -82.10 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -1.19 Total: -17.43 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.57 1.99 -64.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461899365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.237 kcal (2) G-P(sol) polarization free energy of solvation -66.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds