Wall clock time and date at job start Mon Mar 30 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47252 * 2 1 4 4 C 1.50704 * 109.46627 * 120.00214 * 2 1 3 5 5 H 1.08001 * 120.00155 * 120.00387 * 4 2 1 6 6 C 1.37880 * 119.99880 * 299.99247 * 4 2 1 7 7 N 1.31510 * 119.99567 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99679 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47731 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46832 * 120.00609 * 8 6 4 11 11 H 1.48506 * 109.47214 * 240.00218 * 8 6 4 12 12 C 1.50701 * 109.46922 * 239.99828 * 2 1 3 13 13 O 1.21283 * 120.00010 * 263.79751 * 12 2 1 14 14 N 1.34776 * 120.00034 * 83.80280 * 12 2 1 15 15 C 1.47428 * 125.64672 * 4.38898 * 14 12 2 16 16 C 1.54907 * 104.82772 * 204.09298 * 15 14 12 17 17 H 1.09002 * 111.00725 * 81.06632 * 16 15 14 18 18 C 1.53002 * 111.00247 * 204.91665 * 16 15 14 19 19 C 1.53007 * 117.49824 * 240.94386 * 18 16 15 20 20 C 1.53004 * 117.49870 * 172.28571 * 18 16 15 21 21 C 1.55158 * 101.58723 * 322.98962 * 16 15 14 22 22 C 1.47019 * 125.64906 * 184.34403 * 14 12 2 23 23 H 1.09008 * 109.88379 * 59.55618 * 22 14 12 24 24 C 1.52999 * 110.01248 * 298.46938 * 22 14 12 25 25 C 1.53005 * 117.50032 * 139.97643 * 24 22 14 26 26 C 1.52999 * 117.50166 * 71.35430 * 24 22 14 27 27 H 1.09001 * 109.47554 * 297.30901 * 1 2 3 28 28 H 1.09004 * 109.46852 * 57.30687 * 1 2 3 29 29 H 1.09000 * 109.47321 * 177.30161 * 1 2 3 30 30 H 0.97007 * 119.99384 * 179.97438 * 7 6 4 31 31 H 1.08994 * 110.36428 * 322.92687 * 15 14 12 32 32 H 1.08996 * 110.36643 * 85.14418 * 15 14 12 33 33 H 1.08999 * 115.54984 * 26.61328 * 18 16 15 34 34 H 1.08996 * 117.49519 * 359.97438 * 19 18 16 35 35 H 1.08993 * 117.49842 * 145.02050 * 19 18 16 36 36 H 1.09000 * 117.49657 * 214.97884 * 20 18 16 37 37 H 1.08997 * 117.49840 * 359.97275 * 20 18 16 38 38 H 1.09009 * 110.71906 * 277.14251 * 21 16 15 39 39 H 1.08993 * 110.72382 * 153.86568 * 21 16 15 40 40 H 1.09003 * 115.54768 * 285.67794 * 24 22 14 41 41 H 1.08998 * 117.49563 * 359.97438 * 25 24 22 42 42 H 1.08997 * 117.49663 * 145.02140 * 25 24 22 43 43 H 1.09004 * 117.49410 * 214.98364 * 26 24 22 44 44 H 1.08999 * 117.49714 * 359.96968 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6033 8 14 2.3223 -1.1196 4.0079 9 1 3.1480 -2.2858 3.6039 10 1 3.1470 -0.1858 4.8161 11 1 1.1675 -1.5866 4.8165 12 6 2.0323 -0.7105 -1.2305 13 8 2.3414 -1.8817 -1.1707 14 7 2.1381 -0.0443 -2.3973 15 6 1.8859 1.3954 -2.5906 16 6 1.5307 1.5375 -4.0917 17 1 0.4880 1.2765 -4.2729 18 6 1.8359 2.9494 -4.5961 19 6 0.6665 3.7743 -5.1376 20 6 1.7120 3.2046 -6.0996 21 6 2.4845 0.4980 -4.7375 22 6 2.5250 -0.6326 -3.6878 23 1 1.8217 -1.4189 -3.9626 24 6 3.9396 -1.2085 -3.5977 25 6 4.2051 -2.5430 -4.2976 26 6 4.1329 -2.4811 -2.7706 27 1 -0.3634 0.4715 0.9131 28 1 -0.3633 0.5551 -0.8649 29 1 -0.3634 -1.0265 -0.0484 30 1 0.7082 1.1610 3.4844 31 1 1.0505 1.7207 -1.9707 32 1 2.7800 1.9722 -2.3543 33 1 2.6206 3.4814 -4.0583 34 1 -0.3201 3.3109 -5.1348 35 1 0.6822 4.8489 -4.9563 36 1 2.4151 3.9047 -6.5508 37 1 1.4136 2.3665 -6.7294 38 1 3.4771 0.9241 -4.8838 39 1 2.0769 0.1343 -5.6806 40 1 4.7460 -0.4752 -3.5890 41 1 3.3718 -3.0107 -4.8220 42 1 5.1863 -2.6877 -4.7496 43 1 5.0667 -2.5851 -2.2179 44 1 3.2524 -2.9077 -2.2902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001472163665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:02 Heat of formation + Delta-G solvation = 13.746865 kcal Electronic energy + Delta-G solvation = -22535.088510 eV Core-core repulsion = 19453.899372 eV Total energy + Delta-G solvation = -3081.189138 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97841 -37.86807 -36.73876 -35.33550 -33.66007 -31.15596 -29.99785 -28.70611 -25.15042 -24.05729 -22.85061 -22.46059 -22.13855 -21.71680 -20.08361 -19.78471 -18.20685 -16.73095 -16.06055 -15.77858 -15.42031 -14.93779 -14.59222 -14.26038 -13.90041 -13.57410 -13.12888 -12.76288 -12.71174 -12.28947 -11.99086 -11.97251 -11.62528 -11.42998 -11.37113 -11.07627 -11.04046 -10.91394 -10.64372 -10.61145 -10.55490 -10.31961 -10.24574 -10.01502 -9.97308 -9.79486 -9.54769 -8.94948 -8.46308 -8.14500 -7.92614 -6.01259 -4.04320 3.33055 3.40550 3.47505 3.61170 3.66566 3.76516 4.34563 4.46737 4.52273 4.65216 4.75338 4.90125 5.04111 5.11873 5.31183 5.32468 5.40631 5.42513 5.47077 5.52552 5.57842 5.69626 5.75553 5.83568 5.90150 5.93147 6.00962 6.06840 6.09648 6.16026 6.25547 6.38580 6.46598 6.50803 6.68175 6.82174 6.90431 7.04292 7.20999 7.51001 7.79937 8.03791 8.20730 8.47683 9.02564 9.36882 9.60767 11.06100 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.005629 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.374821 B = 4972.981837 C = 6314.572007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.036 3.964 3 H 0.044 0.956 4 C -0.496 4.496 5 H 0.071 0.929 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.539 3.461 13 O -0.535 6.535 14 N -0.625 5.625 15 C 0.113 3.887 16 C -0.073 4.073 17 H 0.083 0.917 18 C -0.138 4.138 19 C -0.179 4.179 20 C -0.179 4.179 21 C -0.113 4.113 22 C 0.166 3.834 23 H 0.065 0.935 24 C -0.165 4.165 25 C -0.190 4.190 26 C -0.165 4.165 27 H 0.094 0.906 28 H 0.011 0.989 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 4.389 -16.533 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.015 3.985 3 H 0.062 0.938 4 C -0.534 4.534 5 H 0.089 0.911 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.332 3.668 13 O -0.411 6.411 14 N -0.360 5.360 15 C -0.010 4.010 16 C -0.092 4.092 17 H 0.101 0.899 18 C -0.157 4.157 19 C -0.216 4.216 20 C -0.216 4.216 21 C -0.151 4.151 22 C 0.062 3.938 23 H 0.083 0.917 24 C -0.184 4.184 25 C -0.228 4.228 26 C -0.201 4.201 27 H 0.113 0.887 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.457 3.804 -16.244 16.747 hybrid contribution 0.423 -0.194 0.752 0.884 sum 1.880 3.611 -15.492 16.018 Atomic orbital electron populations 1.21692 0.96335 0.99443 1.01273 1.18833 0.94093 0.96561 0.89046 0.93826 1.21138 1.30854 1.12407 0.89044 0.91130 1.24934 0.95173 0.95067 0.99052 1.69880 1.37164 1.23140 1.23368 0.86425 0.78641 0.79761 0.82592 1.19595 1.21108 1.21027 1.21748 0.74921 0.87213 0.82962 1.90318 1.49254 1.17437 1.84118 1.48861 1.70120 1.09057 1.08003 1.22223 1.01117 0.82749 0.94944 1.21961 0.99683 0.92487 0.95062 0.89890 1.22177 1.01219 0.96114 0.96156 1.23027 0.94637 0.99667 1.04312 1.22921 1.02780 1.03346 0.92577 1.22652 1.00219 0.94841 0.97384 1.21033 0.93264 0.95109 0.84354 0.91669 1.22489 0.97532 0.91205 1.07190 1.22954 1.01734 1.00668 0.97395 1.23673 1.05143 0.99859 0.91434 0.88723 0.96960 0.95044 0.93044 0.90008 0.91929 0.87475 0.88772 0.88898 0.89031 0.88893 0.90459 0.90789 0.88709 0.89491 0.89823 0.90252 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.93 37.16 0.33 -2.76 16 2 C 0.04 0.90 1.92 -92.92 -0.18 0.72 16 3 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 4 C -0.50 -14.07 8.34 -34.44 -0.29 -14.36 16 5 H 0.07 2.11 7.00 -52.49 -0.37 1.74 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.22 11.30 55.43 0.63 -24.59 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.54 12.41 6.77 -10.99 -0.07 12.34 16 13 O -0.53 -13.43 11.49 5.56 0.06 -13.37 16 14 N -0.62 -11.48 3.07 -163.02 -0.50 -11.98 16 15 C 0.11 1.73 5.84 -2.53 -0.01 1.71 16 16 C -0.07 -0.86 3.21 -88.47 -0.28 -1.14 16 17 H 0.08 0.99 7.97 -51.93 -0.41 0.57 16 18 C -0.14 -1.37 5.26 -90.61 -0.48 -1.85 16 19 C -0.18 -1.61 10.20 -26.69 -0.27 -1.88 16 20 C -0.18 -1.52 9.96 -26.69 -0.27 -1.78 16 21 C -0.11 -1.32 5.67 -24.90 -0.14 -1.47 16 22 C 0.17 2.58 3.11 -66.95 -0.21 2.37 16 23 H 0.07 1.07 8.03 -51.92 -0.42 0.65 16 24 C -0.16 -2.60 5.12 -90.62 -0.46 -3.06 16 25 C -0.19 -2.66 10.19 -26.73 -0.27 -2.94 16 26 C -0.16 -2.92 8.72 -26.73 -0.23 -3.15 16 27 H 0.09 2.46 6.00 -51.93 -0.31 2.15 16 28 H 0.01 0.24 7.21 -51.93 -0.37 -0.13 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.08 1.32 6.51 -51.93 -0.34 0.99 16 32 H 0.06 0.93 7.88 -51.93 -0.41 0.53 16 33 H 0.11 1.07 7.92 -51.93 -0.41 0.66 16 34 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.87 7.67 -51.92 -0.40 0.47 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.45 8.02 -51.93 -0.42 1.04 16 41 H 0.09 1.15 8.13 -51.93 -0.42 0.73 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.14 2.92 5.14 -52.28 -0.27 2.65 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -29.72 343.46 -10.03 -39.75 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.44 Total: 3.89 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.93 Total: -15.72 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.13 Total: -36.57 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.06 Total: -13.37 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.72 -10.03 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472163665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.502 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds