Wall clock time and date at job start Mon Mar 30 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47252 * 2 1 4 4 C 1.50704 * 109.46627 * 120.00214 * 2 1 3 5 5 H 1.08001 * 120.00155 * 120.00387 * 4 2 1 6 6 C 1.37880 * 119.99880 * 299.99247 * 4 2 1 7 7 N 1.31510 * 119.99567 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99679 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47731 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46832 * 120.00609 * 8 6 4 11 11 H 1.48506 * 109.47214 * 240.00218 * 8 6 4 12 12 C 1.50701 * 109.46922 * 239.99828 * 2 1 3 13 13 O 1.21283 * 120.00010 * 263.79751 * 12 2 1 14 14 N 1.34776 * 120.00034 * 83.80280 * 12 2 1 15 15 C 1.47428 * 125.64672 * 4.38898 * 14 12 2 16 16 C 1.54907 * 104.82772 * 204.09298 * 15 14 12 17 17 H 1.09002 * 111.00725 * 81.06632 * 16 15 14 18 18 C 1.53002 * 111.00247 * 204.91665 * 16 15 14 19 19 C 1.53007 * 117.49824 * 240.94386 * 18 16 15 20 20 C 1.53004 * 117.49870 * 172.28571 * 18 16 15 21 21 C 1.55158 * 101.58723 * 322.98962 * 16 15 14 22 22 C 1.47019 * 125.64906 * 184.34403 * 14 12 2 23 23 H 1.09008 * 109.88379 * 59.55618 * 22 14 12 24 24 C 1.52999 * 110.01248 * 298.46938 * 22 14 12 25 25 C 1.53005 * 117.50032 * 139.97643 * 24 22 14 26 26 C 1.52999 * 117.50166 * 71.35430 * 24 22 14 27 27 H 1.09001 * 109.47554 * 297.30901 * 1 2 3 28 28 H 1.09004 * 109.46852 * 57.30687 * 1 2 3 29 29 H 1.09000 * 109.47321 * 177.30161 * 1 2 3 30 30 H 0.97007 * 119.99384 * 179.97438 * 7 6 4 31 31 H 1.08994 * 110.36428 * 322.92687 * 15 14 12 32 32 H 1.08996 * 110.36643 * 85.14418 * 15 14 12 33 33 H 1.08999 * 115.54984 * 26.61328 * 18 16 15 34 34 H 1.08996 * 117.49519 * 359.97438 * 19 18 16 35 35 H 1.08993 * 117.49842 * 145.02050 * 19 18 16 36 36 H 1.09000 * 117.49657 * 214.97884 * 20 18 16 37 37 H 1.08997 * 117.49840 * 359.97275 * 20 18 16 38 38 H 1.09009 * 110.71906 * 277.14251 * 21 16 15 39 39 H 1.08993 * 110.72382 * 153.86568 * 21 16 15 40 40 H 1.09003 * 115.54768 * 285.67794 * 24 22 14 41 41 H 1.08998 * 117.49563 * 359.97438 * 25 24 22 42 42 H 1.08997 * 117.49663 * 145.02140 * 25 24 22 43 43 H 1.09004 * 117.49410 * 214.98364 * 26 24 22 44 44 H 1.08999 * 117.49714 * 359.96968 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6033 8 14 2.3223 -1.1196 4.0079 9 1 3.1480 -2.2858 3.6039 10 1 3.1470 -0.1858 4.8161 11 1 1.1675 -1.5866 4.8165 12 6 2.0323 -0.7105 -1.2305 13 8 2.3414 -1.8817 -1.1707 14 7 2.1381 -0.0443 -2.3973 15 6 1.8859 1.3954 -2.5906 16 6 1.5307 1.5375 -4.0917 17 1 0.4880 1.2765 -4.2729 18 6 1.8359 2.9494 -4.5961 19 6 0.6665 3.7743 -5.1376 20 6 1.7120 3.2046 -6.0996 21 6 2.4845 0.4980 -4.7375 22 6 2.5250 -0.6326 -3.6878 23 1 1.8217 -1.4189 -3.9626 24 6 3.9396 -1.2085 -3.5977 25 6 4.2051 -2.5430 -4.2976 26 6 4.1329 -2.4811 -2.7706 27 1 -0.3634 0.4715 0.9131 28 1 -0.3633 0.5551 -0.8649 29 1 -0.3634 -1.0265 -0.0484 30 1 0.7082 1.1610 3.4844 31 1 1.0505 1.7207 -1.9707 32 1 2.7800 1.9722 -2.3543 33 1 2.6206 3.4814 -4.0583 34 1 -0.3201 3.3109 -5.1348 35 1 0.6822 4.8489 -4.9563 36 1 2.4151 3.9047 -6.5508 37 1 1.4136 2.3665 -6.7294 38 1 3.4771 0.9241 -4.8838 39 1 2.0769 0.1343 -5.6806 40 1 4.7460 -0.4752 -3.5890 41 1 3.3718 -3.0107 -4.8220 42 1 5.1863 -2.6877 -4.7496 43 1 5.0667 -2.5851 -2.2179 44 1 3.2524 -2.9077 -2.2902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472163665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:02 Heat of formation + Delta-G solvation = -1.048970 kcal Electronic energy + Delta-G solvation = -22535.730106 eV Core-core repulsion = 19453.899372 eV Total energy + Delta-G solvation = -3081.830734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36548 -39.13020 -38.00829 -36.53617 -35.70759 -32.85580 -31.60783 -29.92008 -27.27690 -25.55273 -23.98451 -23.71620 -23.06442 -22.93882 -21.53894 -20.70092 -19.71012 -18.47686 -17.90223 -17.25074 -16.65713 -16.25966 -16.04456 -15.60363 -15.43106 -14.89677 -14.66397 -14.25650 -14.06877 -13.76127 -13.40051 -13.25103 -13.01526 -12.90302 -12.65021 -12.59321 -12.37984 -12.30532 -12.26462 -12.23311 -12.09047 -12.01130 -11.58437 -11.17731 -11.13104 -11.04274 -10.93224 -10.59547 -10.55202 -9.94649 -9.43681 -8.16138 -6.26641 1.37701 1.39630 1.52813 1.97171 2.16040 2.44702 2.92411 3.08024 3.13278 3.53914 3.63845 3.77233 3.95704 4.10948 4.18980 4.21055 4.24060 4.33182 4.39654 4.45242 4.52240 4.64014 4.67870 4.71330 4.82018 4.84873 4.91378 4.95808 5.00445 5.01241 5.11154 5.12985 5.17213 5.27099 5.28469 5.38573 5.40149 5.48422 5.50557 5.70882 5.75303 5.95667 6.20725 6.71525 6.83302 7.39805 7.63772 8.89925 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.005629 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.374821 B = 4972.981837 C = 6314.572007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.034 3.966 3 H 0.032 0.968 4 C -0.523 4.523 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.533 3.467 13 O -0.565 6.565 14 N -0.621 5.621 15 C 0.105 3.895 16 C -0.057 4.057 17 H 0.085 0.915 18 C -0.150 4.150 19 C -0.182 4.182 20 C -0.164 4.164 21 C -0.099 4.099 22 C 0.159 3.841 23 H 0.057 0.943 24 C -0.167 4.167 25 C -0.151 4.151 26 C -0.199 4.199 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.018 0.982 30 H 0.265 0.735 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 5.393 -18.895 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.013 3.987 3 H 0.050 0.950 4 C -0.561 4.561 5 H 0.063 0.937 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.200 1.200 12 C 0.325 3.675 13 O -0.444 6.444 14 N -0.355 5.355 15 C -0.018 4.018 16 C -0.077 4.077 17 H 0.103 0.897 18 C -0.169 4.169 19 C -0.219 4.219 20 C -0.200 4.200 21 C -0.136 4.136 22 C 0.056 3.944 23 H 0.075 0.925 24 C -0.186 4.186 25 C -0.189 4.189 26 C -0.236 4.236 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.088 0.912 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.755 4.849 -18.642 19.342 hybrid contribution 0.323 -0.482 1.478 1.588 sum 2.078 4.367 -17.163 17.832 Atomic orbital electron populations 1.21491 0.95588 0.98785 1.01477 1.18719 0.94731 0.95644 0.89636 0.95014 1.21253 1.31511 1.12274 0.91080 0.93692 1.25588 0.95211 0.95726 1.01385 1.69954 1.37233 1.23631 1.24240 0.85547 0.78359 0.78582 0.79426 1.20467 1.19818 1.19984 1.21258 0.75411 0.86898 0.83975 1.90354 1.50608 1.18482 1.84969 1.48732 1.68575 1.10399 1.07799 1.22447 1.00850 0.80755 0.97721 1.21844 0.99819 0.93980 0.92008 0.89676 1.22070 1.02107 0.94983 0.97711 1.23107 0.94498 0.99968 1.04334 1.23006 1.02176 1.03503 0.91360 1.22642 1.01070 0.93013 0.96899 1.21301 0.92890 0.96439 0.83736 0.92517 1.22579 0.97808 0.91451 1.06749 1.23012 1.03481 0.98209 0.94171 1.23403 1.03279 1.02768 0.94176 0.90770 0.94059 0.96234 0.92576 0.91331 0.91644 0.87579 0.88772 0.88272 0.87833 0.88062 0.89288 0.88039 0.88031 0.88311 0.87232 0.91218 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.93 71.98 0.64 -5.01 16 2 C 0.03 1.77 1.92 -12.29 -0.02 1.75 16 3 H 0.03 1.71 7.34 -2.39 -0.02 1.69 16 4 C -0.52 -30.88 8.34 25.60 0.21 -30.67 16 5 H 0.04 2.83 7.00 -2.91 -0.02 2.81 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -51.96 11.30 21.45 0.24 -51.72 16 8 Si 0.96 45.59 29.54 68.60 2.03 47.61 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 C 0.53 25.49 6.77 87.66 0.59 26.08 16 13 O -0.56 -29.91 11.49 -3.04 -0.03 -29.95 16 14 N -0.62 -22.96 3.07 -788.06 -2.42 -25.37 16 15 C 0.10 3.14 5.84 86.85 0.51 3.65 16 16 C -0.06 -1.22 3.21 -9.40 -0.03 -1.25 16 17 H 0.08 1.80 7.97 -2.39 -0.02 1.78 16 18 C -0.15 -2.56 5.26 -10.79 -0.06 -2.62 16 19 C -0.18 -2.74 10.20 30.62 0.31 -2.43 16 20 C -0.16 -2.15 9.96 30.62 0.30 -1.84 16 21 C -0.10 -1.99 5.67 31.78 0.18 -1.81 16 22 C 0.16 4.74 3.11 45.34 0.14 4.88 16 23 H 0.06 1.80 8.03 -2.38 -0.02 1.78 16 24 C -0.17 -5.06 5.12 -10.79 -0.06 -5.11 16 25 C -0.15 -3.92 10.19 30.60 0.31 -3.61 16 26 C -0.20 -7.23 8.72 30.59 0.27 -6.96 16 27 H 0.07 3.94 6.00 -2.39 -0.01 3.93 16 28 H 0.04 1.72 7.21 -2.38 -0.02 1.70 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 31 H 0.07 2.22 6.51 -2.39 -0.02 2.21 16 32 H 0.07 1.92 7.88 -2.39 -0.02 1.91 16 33 H 0.11 1.86 7.92 -2.39 -0.02 1.84 16 34 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.65 7.67 -2.38 -0.02 1.63 16 39 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.10 2.93 8.02 -2.39 -0.02 2.92 16 41 H 0.10 2.35 8.13 -2.39 -0.02 2.33 16 42 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 44 H 0.10 4.63 5.14 -7.89 -0.04 4.59 16 Total: -1.00 -66.89 343.46 4.51 -62.38 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.94 Total: 20.42 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 3.76 Total: -23.38 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -2.18 Total: -77.09 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.03 Total: -29.95 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -66.89 4.51 -62.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472163665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.332 kcal (2) G-P(sol) polarization free energy of solvation -66.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds