Wall clock time and date at job start Mon Mar 30 2020 01:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 C 1.50694 * 109.47421 * 239.99934 * 2 1 3 5 5 H 1.08004 * 119.99907 * 240.00410 * 4 2 1 6 6 C 1.37878 * 120.00109 * 59.99223 * 4 2 1 7 7 N 1.31512 * 120.00131 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46792 * 60.00494 * 8 6 4 10 10 H 1.48497 * 109.47231 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47266 * 300.00823 * 8 6 4 12 12 C 1.50703 * 109.47130 * 119.99416 * 2 1 3 13 13 O 1.21282 * 119.99842 * 64.61924 * 12 2 1 14 14 N 1.34778 * 119.99827 * 244.34469 * 12 2 1 15 15 C 1.48091 * 127.84365 * 184.53024 * 14 12 2 16 16 C 1.54675 * 104.57941 * 140.07826 * 15 14 12 17 17 H 1.09004 * 113.15785 * 147.54709 * 16 15 14 18 18 C 1.57493 * 107.28093 * 274.51575 * 16 15 14 19 19 H 1.09003 * 115.98497 * 271.61449 * 18 16 15 20 20 C 1.55907 * 105.57045 * 41.38708 * 18 16 15 21 21 C 1.54577 * 104.62993 * 70.20671 * 20 18 16 22 22 C 1.55915 * 104.64393 * 0.04176 * 21 20 18 23 23 H 1.09000 * 115.86084 * 160.69041 * 22 21 20 24 24 C 1.56909 * 101.44708 * 33.95128 * 22 21 20 25 25 C 1.55554 * 104.65989 * 24.24020 * 16 15 14 26 26 C 1.53003 * 112.88609 * 122.90520 * 25 16 15 27 27 C 1.48084 * 127.85072 * 4.85506 * 14 12 2 28 28 H 1.08998 * 109.47358 * 53.92163 * 1 2 3 29 29 H 1.09005 * 109.47208 * 173.91829 * 1 2 3 30 30 H 1.08999 * 109.47462 * 293.91905 * 1 2 3 31 31 H 0.96993 * 119.99926 * 179.97438 * 7 6 4 32 32 H 1.09006 * 110.37505 * 258.94489 * 15 14 12 33 33 H 1.08997 * 110.37840 * 21.29448 * 15 14 12 34 34 H 1.09002 * 110.40760 * 311.41589 * 20 18 16 35 35 H 1.09000 * 110.40536 * 188.99328 * 20 18 16 36 36 H 1.09006 * 110.40112 * 241.24791 * 21 20 18 37 37 H 1.08998 * 110.49743 * 118.88284 * 21 20 18 38 38 H 1.08999 * 112.02658 * 63.05156 * 24 22 21 39 39 H 1.09000 * 112.02212 * 189.57093 * 24 22 21 40 40 H 1.08994 * 109.47446 * 300.56128 * 26 25 16 41 41 H 1.09005 * 109.47267 * 60.56547 * 26 25 16 42 42 H 1.09000 * 109.46609 * 180.56066 * 26 25 16 43 43 H 1.09004 * 110.38185 * 338.73623 * 27 14 12 44 44 H 1.08992 * 110.38722 * 101.10315 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8300 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0075 10 1 1.8270 -0.4202 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0323 -0.7103 1.2306 13 8 1.8100 -1.8930 1.3813 14 7 2.7334 -0.0324 2.1609 15 6 3.3831 -0.5692 3.3786 16 6 4.7263 0.1922 3.4711 17 1 5.0540 0.3604 4.4970 18 6 5.7662 -0.5835 2.5782 19 1 6.3182 -1.3826 3.0729 20 6 4.9897 -0.9901 1.2889 21 6 4.7568 0.3405 0.5374 22 6 5.4155 1.4252 1.4431 23 1 5.6510 2.3718 0.9566 24 6 6.6308 0.6342 2.0427 25 6 4.4838 1.5147 2.6889 26 6 4.7446 2.7627 3.5348 27 6 3.0234 1.4192 2.2010 28 1 -0.3634 0.6052 -0.8305 29 1 -0.3634 -1.0219 -0.1089 30 1 -0.3634 0.4166 0.9394 31 1 0.7094 1.1615 -3.4844 32 1 2.7690 -0.3682 4.2565 33 1 3.5589 -1.6398 3.2744 34 1 4.0370 -1.4517 1.5486 35 1 5.5891 -1.6691 0.6824 36 1 3.6895 0.5335 0.4283 37 1 5.2396 0.3167 -0.4395 38 1 7.3352 0.3214 1.2720 39 1 7.1248 1.1877 2.8412 40 1 4.0872 2.7564 4.4041 41 1 5.7835 2.7674 3.8648 42 1 4.5491 3.6535 2.9378 43 1 2.9265 1.8534 1.2059 44 1 2.3556 1.9205 2.9015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538608607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:54 Heat of formation + Delta-G solvation = -0.131398 kcal Electronic energy + Delta-G solvation = -24132.059277 eV Core-core repulsion = 21050.268332 eV Total energy + Delta-G solvation = -3081.790945 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74171 -38.07501 -34.63845 -33.81044 -32.35765 -31.17917 -29.94120 -27.50954 -26.55673 -25.55852 -25.21167 -23.58220 -21.60988 -20.63449 -19.60518 -18.41906 -17.47053 -16.68869 -16.26698 -15.88041 -15.14377 -14.87953 -14.38296 -14.13248 -13.26572 -13.10436 -12.84879 -12.53949 -12.46290 -12.25333 -12.05103 -11.79713 -11.55496 -11.36059 -11.09975 -10.97097 -10.84416 -10.75637 -10.67751 -10.56555 -10.48340 -10.37076 -10.17751 -10.12903 -9.98352 -9.71752 -9.44559 -9.02750 -8.60469 -8.32331 -7.91082 -6.07071 -4.11183 3.32296 3.35660 3.39442 3.69229 3.73327 4.43539 4.50353 4.60810 4.71552 5.05624 5.25142 5.27101 5.30837 5.39428 5.46090 5.52753 5.61690 5.73446 5.80068 5.85103 5.91694 5.98179 6.00147 6.05409 6.06559 6.08890 6.17744 6.24338 6.34710 6.37474 6.44968 6.65209 6.72054 6.79536 6.84889 6.90821 6.97216 7.05958 7.18613 7.50122 7.74661 7.95889 8.16220 8.41237 8.89435 9.20877 9.52959 11.00183 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.007109 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.154915 B = 3937.688755 C = 4258.512719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.037 3.963 3 H 0.043 0.957 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.548 3.452 13 O -0.554 6.554 14 N -0.629 5.629 15 C 0.105 3.895 16 C -0.095 4.095 17 H 0.090 0.910 18 C -0.097 4.097 19 H 0.088 0.912 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.092 4.092 23 H 0.092 0.908 24 C -0.123 4.123 25 C -0.075 4.075 26 C -0.127 4.127 27 C 0.109 3.891 28 H 0.089 0.911 29 H 0.039 0.961 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 4.766 11.346 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.016 3.984 3 H 0.061 0.939 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.342 3.658 13 O -0.431 6.431 14 N -0.365 5.365 15 C -0.018 4.018 16 C -0.114 4.114 17 H 0.108 0.892 18 C -0.115 4.115 19 H 0.106 0.894 20 C -0.167 4.167 21 C -0.171 4.171 22 C -0.110 4.110 23 H 0.110 0.890 24 C -0.160 4.160 25 C -0.076 4.076 26 C -0.185 4.185 27 C -0.014 4.014 28 H 0.108 0.892 29 H 0.058 0.942 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.595 4.154 11.159 14.685 hybrid contribution 0.379 -0.407 -0.821 0.992 sum 8.975 3.747 10.338 14.193 Atomic orbital electron populations 1.21677 0.96176 1.01245 0.99412 1.18920 0.94315 0.96312 0.88889 0.93904 1.20766 1.31518 1.12303 0.88940 0.92119 1.24874 0.94942 0.94966 0.98880 1.69868 1.36527 1.22783 1.23735 0.86571 0.79216 0.79930 0.81873 1.20119 1.21239 1.20182 1.21622 0.74392 0.87030 0.82730 1.90555 1.57883 1.16589 1.78058 1.49412 1.54715 1.08514 1.23860 1.22234 0.92306 0.99391 0.87897 1.23539 0.95217 0.94487 0.98188 0.89217 1.24118 0.95244 0.96184 0.95963 0.89377 1.22897 1.01124 0.97877 0.94819 1.23065 1.04085 0.93169 0.96773 1.23568 0.94444 0.98078 0.94935 0.89026 1.23841 0.96485 0.96403 0.99274 1.22505 0.95205 0.94508 0.95403 1.21595 1.01333 0.96445 0.99083 1.22391 0.94189 0.82657 1.02207 0.89228 0.94155 0.97336 0.92776 0.92673 0.90213 0.89307 0.93353 0.87617 0.92778 0.91834 0.91799 0.92629 0.92453 0.92294 0.88980 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.83 37.16 0.33 -2.81 16 2 C 0.04 0.91 1.65 -92.93 -0.15 0.75 16 3 H 0.04 1.07 5.47 -51.93 -0.28 0.78 16 4 C -0.50 -13.59 8.02 -34.44 -0.28 -13.86 16 5 H 0.06 1.74 7.71 -52.48 -0.40 1.34 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.50 11.39 55.43 0.63 -23.87 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.55 12.71 4.21 -10.98 -0.05 12.66 16 13 O -0.55 -14.59 16.45 5.56 0.09 -14.49 16 14 N -0.63 -11.68 1.71 -169.30 -0.29 -11.97 16 15 C 0.10 1.64 5.75 -2.29 -0.01 1.62 16 16 C -0.10 -1.22 3.77 -85.93 -0.32 -1.55 16 17 H 0.09 0.96 7.97 -51.93 -0.41 0.55 16 18 C -0.10 -1.33 4.84 -83.49 -0.40 -1.73 16 19 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 20 C -0.13 -2.30 5.61 -24.35 -0.14 -2.43 16 21 C -0.13 -2.42 5.60 -24.35 -0.14 -2.55 16 22 C -0.09 -1.29 4.30 -85.44 -0.37 -1.66 16 23 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 24 C -0.12 -1.54 6.53 -21.49 -0.14 -1.68 16 25 C -0.08 -0.97 0.84 -150.98 -0.13 -1.10 16 26 C -0.13 -1.28 8.91 37.16 0.33 -0.94 16 27 C 0.11 1.70 5.22 -2.51 -0.01 1.69 16 28 H 0.09 2.32 6.26 -51.93 -0.32 2.00 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.36 6.69 -51.93 -0.35 1.01 16 34 H 0.09 1.81 2.77 -51.93 -0.14 1.67 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 2.16 1.52 -51.93 -0.08 2.08 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.69 7.81 -51.93 -0.41 0.29 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.52 7.81 -51.93 -0.41 0.11 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.59 5.11 -51.93 -0.27 1.32 16 44 H 0.06 0.83 7.99 -51.93 -0.42 0.42 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -29.56 316.62 -8.24 -37.80 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.85 Total: 3.28 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.57 Total: -11.91 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.34 Total: -35.83 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.09 Total: -14.49 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.56 -8.24 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538608607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.664 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds