Wall clock time and date at job start Mon Mar 30 2020 01:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 C 1.50694 * 109.47421 * 239.99934 * 2 1 3 5 5 H 1.08004 * 119.99907 * 240.00410 * 4 2 1 6 6 C 1.37878 * 120.00109 * 59.99223 * 4 2 1 7 7 N 1.31512 * 120.00131 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46792 * 60.00494 * 8 6 4 10 10 H 1.48497 * 109.47231 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47266 * 300.00823 * 8 6 4 12 12 C 1.50703 * 109.47130 * 119.99416 * 2 1 3 13 13 O 1.21282 * 119.99842 * 64.61924 * 12 2 1 14 14 N 1.34778 * 119.99827 * 244.34469 * 12 2 1 15 15 C 1.48091 * 127.84365 * 184.53024 * 14 12 2 16 16 C 1.54675 * 104.57941 * 140.07826 * 15 14 12 17 17 H 1.09004 * 113.15785 * 147.54709 * 16 15 14 18 18 C 1.57493 * 107.28093 * 274.51575 * 16 15 14 19 19 H 1.09003 * 115.98497 * 271.61449 * 18 16 15 20 20 C 1.55907 * 105.57045 * 41.38708 * 18 16 15 21 21 C 1.54577 * 104.62993 * 70.20671 * 20 18 16 22 22 C 1.55915 * 104.64393 * 0.04176 * 21 20 18 23 23 H 1.09000 * 115.86084 * 160.69041 * 22 21 20 24 24 C 1.56909 * 101.44708 * 33.95128 * 22 21 20 25 25 C 1.55554 * 104.65989 * 24.24020 * 16 15 14 26 26 C 1.53003 * 112.88609 * 122.90520 * 25 16 15 27 27 C 1.48084 * 127.85072 * 4.85506 * 14 12 2 28 28 H 1.08998 * 109.47358 * 53.92163 * 1 2 3 29 29 H 1.09005 * 109.47208 * 173.91829 * 1 2 3 30 30 H 1.08999 * 109.47462 * 293.91905 * 1 2 3 31 31 H 0.96993 * 119.99926 * 179.97438 * 7 6 4 32 32 H 1.09006 * 110.37505 * 258.94489 * 15 14 12 33 33 H 1.08997 * 110.37840 * 21.29448 * 15 14 12 34 34 H 1.09002 * 110.40760 * 311.41589 * 20 18 16 35 35 H 1.09000 * 110.40536 * 188.99328 * 20 18 16 36 36 H 1.09006 * 110.40112 * 241.24791 * 21 20 18 37 37 H 1.08998 * 110.49743 * 118.88284 * 21 20 18 38 38 H 1.08999 * 112.02658 * 63.05156 * 24 22 21 39 39 H 1.09000 * 112.02212 * 189.57093 * 24 22 21 40 40 H 1.08994 * 109.47446 * 300.56128 * 26 25 16 41 41 H 1.09005 * 109.47267 * 60.56547 * 26 25 16 42 42 H 1.09000 * 109.46609 * 180.56066 * 26 25 16 43 43 H 1.09004 * 110.38185 * 338.73623 * 27 14 12 44 44 H 1.08992 * 110.38722 * 101.10315 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8300 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0075 10 1 1.8270 -0.4202 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0323 -0.7103 1.2306 13 8 1.8100 -1.8930 1.3813 14 7 2.7334 -0.0324 2.1609 15 6 3.3831 -0.5692 3.3786 16 6 4.7263 0.1922 3.4711 17 1 5.0540 0.3604 4.4970 18 6 5.7662 -0.5835 2.5782 19 1 6.3182 -1.3826 3.0729 20 6 4.9897 -0.9901 1.2889 21 6 4.7568 0.3405 0.5374 22 6 5.4155 1.4252 1.4431 23 1 5.6510 2.3718 0.9566 24 6 6.6308 0.6342 2.0427 25 6 4.4838 1.5147 2.6889 26 6 4.7446 2.7627 3.5348 27 6 3.0234 1.4192 2.2010 28 1 -0.3634 0.6052 -0.8305 29 1 -0.3634 -1.0219 -0.1089 30 1 -0.3634 0.4166 0.9394 31 1 0.7094 1.1615 -3.4844 32 1 2.7690 -0.3682 4.2565 33 1 3.5589 -1.6398 3.2744 34 1 4.0370 -1.4517 1.5486 35 1 5.5891 -1.6691 0.6824 36 1 3.6895 0.5335 0.4283 37 1 5.2396 0.3167 -0.4395 38 1 7.3352 0.3214 1.2720 39 1 7.1248 1.1877 2.8412 40 1 4.0872 2.7564 4.4041 41 1 5.7835 2.7674 3.8648 42 1 4.5491 3.6535 2.9378 43 1 2.9265 1.8534 1.2059 44 1 2.3556 1.9205 2.9015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538608607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:53 Heat of formation + Delta-G solvation = -15.943125 kcal Electronic energy + Delta-G solvation = -24132.744924 eV Core-core repulsion = 21050.268332 eV Total energy + Delta-G solvation = -3082.476593 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.02138 -39.79024 -36.05058 -35.85548 -33.50682 -32.87330 -31.57771 -28.77576 -27.68366 -27.32108 -26.78835 -25.11819 -23.15954 -21.94676 -20.71518 -20.08156 -18.76170 -18.27672 -18.24716 -17.34428 -16.76006 -16.33644 -15.87123 -15.52632 -14.86754 -14.75522 -14.44536 -13.73688 -13.71812 -13.58662 -13.40010 -13.21312 -13.11276 -12.91136 -12.80614 -12.71440 -12.50327 -12.29072 -12.21033 -12.11960 -11.89482 -11.75179 -11.68492 -11.54207 -11.15437 -11.08596 -10.94291 -10.74222 -10.62405 -10.28454 -9.39213 -8.19021 -6.28999 1.35922 1.37692 1.45148 1.90149 2.21018 2.42719 3.10532 3.40805 3.46606 3.57954 3.91481 4.07814 4.18587 4.27606 4.32085 4.36144 4.39548 4.54297 4.57317 4.67718 4.73337 4.74782 4.77068 4.84600 4.86193 4.89975 4.97975 4.99953 5.08800 5.14320 5.23394 5.27135 5.31867 5.36700 5.41410 5.43981 5.47360 5.53451 5.62691 5.66360 5.79483 5.86217 6.13871 6.68751 6.75542 7.34165 7.47547 8.87191 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.007109 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.154915 B = 3937.688755 C = 4258.512719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.037 3.963 3 H 0.040 0.960 4 C -0.512 4.512 5 H 0.034 0.966 6 C 0.027 3.973 7 N -0.906 5.906 8 Si 0.948 3.052 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.274 1.274 12 C 0.550 3.450 13 O -0.599 6.599 14 N -0.625 5.625 15 C 0.098 3.902 16 C -0.080 4.080 17 H 0.133 0.867 18 C -0.092 4.092 19 H 0.107 0.893 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.090 4.090 23 H 0.103 0.897 24 C -0.108 4.108 25 C -0.063 4.063 26 C -0.121 4.121 27 C 0.100 3.900 28 H 0.075 0.925 29 H 0.019 0.981 30 H 0.031 0.969 31 H 0.266 0.734 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.030 0.970 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.888 6.658 13.773 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.016 3.984 3 H 0.058 0.942 4 C -0.550 4.550 5 H 0.053 0.947 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.774 3.226 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.199 1.199 12 C 0.343 3.657 13 O -0.481 6.481 14 N -0.359 5.359 15 C -0.024 4.024 16 C -0.099 4.099 17 H 0.151 0.849 18 C -0.110 4.110 19 H 0.125 0.875 20 C -0.174 4.174 21 C -0.180 4.180 22 C -0.108 4.108 23 H 0.121 0.879 24 C -0.146 4.146 25 C -0.064 4.064 26 C -0.178 4.178 27 C -0.022 4.022 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.591 6.096 13.614 18.294 hybrid contribution -0.253 -1.000 -1.606 1.908 sum 10.339 5.096 12.008 16.645 Atomic orbital electron populations 1.21534 0.96337 0.99732 0.99999 1.18790 0.94218 0.95985 0.89409 0.94179 1.20796 1.31706 1.11846 0.90669 0.94737 1.25482 0.95096 0.95647 1.01056 1.69933 1.36770 1.23320 1.24447 0.85766 0.78817 0.78719 0.79327 1.20593 1.19677 1.19883 1.21054 0.75099 0.86313 0.83191 1.90512 1.60194 1.18227 1.79149 1.49242 1.52899 1.10051 1.23662 1.22507 0.94267 0.98756 0.86869 1.23621 0.92787 0.93330 1.00122 0.84887 1.24147 0.95463 0.97342 0.94090 0.87475 1.22876 1.00125 0.97205 0.97207 1.23052 1.02708 0.95474 0.96769 1.23594 0.95373 0.97299 0.94551 0.87938 1.23803 0.95485 0.95346 0.99932 1.22508 0.92322 0.96378 0.95172 1.21592 1.03082 0.94285 0.98860 1.22671 0.97157 0.80557 1.01818 0.90631 0.96145 0.95008 0.92433 0.90375 0.92315 0.92282 0.95145 0.90148 0.95478 0.92377 0.88203 0.91108 0.90272 0.91967 0.91319 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.83 71.98 0.64 -5.40 16 2 C 0.04 1.92 1.65 -12.29 -0.02 1.90 16 3 H 0.04 2.09 5.47 -2.39 -0.01 2.08 16 4 C -0.51 -29.53 8.02 25.60 0.21 -29.32 16 5 H 0.03 2.12 7.71 -2.91 -0.02 2.10 16 6 C 0.03 1.52 5.30 84.66 0.45 1.97 16 7 N -0.91 -50.98 11.39 21.45 0.24 -50.74 16 8 Si 0.95 45.11 29.54 68.60 2.03 47.13 16 9 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.55 26.65 4.21 87.66 0.37 27.02 16 13 O -0.60 -33.38 16.45 -3.03 -0.05 -33.43 16 14 N -0.63 -23.29 1.71 -807.92 -1.38 -24.67 16 15 C 0.10 2.90 5.75 86.64 0.50 3.40 16 16 C -0.08 -1.73 3.77 -7.76 -0.03 -1.75 16 17 H 0.13 1.91 7.97 -2.38 -0.02 1.89 16 18 C -0.09 -2.29 4.84 -6.18 -0.03 -2.32 16 19 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 20 C -0.14 -4.98 5.61 32.14 0.18 -4.79 16 21 C -0.14 -5.32 5.60 32.14 0.18 -5.14 16 22 C -0.09 -2.33 4.30 -7.44 -0.03 -2.36 16 23 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 24 C -0.11 -2.32 6.53 33.99 0.22 -2.10 16 25 C -0.06 -1.39 0.84 -49.89 -0.04 -1.44 16 26 C -0.12 -1.73 8.91 71.98 0.64 -1.09 16 27 C 0.10 2.98 5.22 86.50 0.45 3.44 16 28 H 0.07 4.05 6.26 -2.39 -0.01 4.03 16 29 H 0.02 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.06 2.00 6.69 -2.39 -0.02 1.99 16 34 H 0.06 2.53 2.77 -2.39 -0.01 2.53 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 3.43 1.52 -2.38 0.00 3.43 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.52 7.81 -2.39 -0.02 1.50 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.87 7.81 -2.38 -0.02 0.85 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 2.39 5.11 -2.38 -0.01 2.38 16 44 H 0.08 2.09 7.99 -2.39 -0.02 2.07 16 Total: -1.00 -68.97 316.62 5.51 -63.46 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.99 Total: 16.23 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 3.68 Total: -17.98 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -1.14 Total: -75.41 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.05 Total: -33.43 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.97 5.51 -63.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538608607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.522 kcal (2) G-P(sol) polarization free energy of solvation -68.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds