Wall clock time and date at job start Mon Mar 30 2020 02:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35313 * 126.13114 * 2 1 4 4 C 1.39867 * 107.91802 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.89582 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.45035 * 35.02755 * 5 4 3 7 7 C 1.53031 * 109.46304 * 275.05378 * 5 4 3 8 8 C 1.53124 * 109.27925 * 180.80592 * 7 5 4 9 9 C 1.53121 * 109.16154 * 57.64787 * 8 7 5 10 10 C 1.53031 * 109.28135 * 302.35094 * 9 8 7 11 11 N 1.46844 * 109.46220 * 154.99883 * 5 4 3 12 12 C 1.46907 * 110.99910 * 305.85675 * 11 5 4 13 13 C 1.52996 * 109.47007 * 301.83623 * 12 11 5 14 14 C 1.52998 * 109.46929 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47154 * 89.99418 * 19 17 15 21 21 H 1.48493 * 109.47010 * 209.99942 * 19 17 15 22 22 H 1.48502 * 109.46736 * 329.99638 * 19 17 15 23 23 N 1.30835 * 108.20402 * 0.26024 * 4 3 2 24 24 N 1.34949 * 126.12048 * 179.97438 * 2 1 3 25 25 H 0.97003 * 126.03926 * 0.02931 * 24 2 1 26 26 H 1.08998 * 109.46994 * 89.99696 * 1 2 3 27 27 H 1.08998 * 109.47176 * 210.00431 * 1 2 3 28 28 H 1.09007 * 109.46368 * 330.00454 * 1 2 3 29 29 H 1.07994 * 126.04006 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.50703 * 60.86507 * 7 5 4 31 31 H 1.09001 * 109.50673 * 300.74235 * 7 5 4 32 32 H 1.09001 * 109.52258 * 297.74992 * 8 7 5 33 33 H 1.08998 * 109.52470 * 177.56417 * 8 7 5 34 34 H 1.08997 * 109.50156 * 182.40283 * 9 8 7 35 35 H 1.09005 * 109.49643 * 62.29318 * 9 8 7 36 36 H 1.09002 * 109.46122 * 299.16069 * 10 9 8 37 37 H 1.09004 * 109.46306 * 179.18950 * 10 9 8 38 38 H 1.09000 * 109.46801 * 181.83500 * 12 11 5 39 39 H 1.08994 * 109.47121 * 61.83691 * 12 11 5 40 40 H 1.09000 * 109.47441 * 60.00268 * 13 12 11 41 41 H 1.09002 * 109.47087 * 299.99714 * 13 12 11 42 42 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 43 43 H 1.08998 * 109.47454 * 300.00107 * 14 13 12 44 44 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6557 0.0006 5 6 4.8544 1.5392 0.0003 6 1 4.6549 2.4343 0.5895 7 6 5.1933 1.9401 -1.4372 8 6 6.4458 2.8210 -1.4345 9 6 7.5968 2.0559 -0.7754 10 6 7.1882 1.6517 0.6429 11 7 5.9863 0.8099 0.5862 12 6 5.6449 0.2892 1.9168 13 6 5.2353 1.4478 2.8281 14 6 4.8804 0.9056 4.2141 15 6 4.4774 2.0469 5.1120 16 1 4.4752 3.0579 4.7322 17 6 4.1068 1.7999 6.4168 18 7 4.1044 0.5681 6.8777 19 14 3.6067 3.2144 7.5296 20 1 2.1430 3.4386 7.4177 21 1 3.9508 2.8836 8.9357 22 1 4.3288 4.4457 7.1198 23 7 3.6333 -0.6526 -0.0047 24 7 2.3025 -1.0901 0.0005 25 1 2.0054 -2.0135 0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3632 0.8901 0.5138 29 1 1.9742 2.1210 -0.0004 30 1 4.3591 2.4951 -1.8666 31 1 5.3794 1.0449 -2.0305 32 1 6.2475 3.7345 -0.8738 33 1 6.7159 3.0733 -2.4599 34 1 8.4798 2.6935 -0.7320 35 1 7.8207 1.1624 -1.3583 36 1 6.9778 2.5462 1.2291 37 1 8.0003 1.0942 1.1098 38 1 6.5111 -0.2184 2.3414 39 1 4.8175 -0.4150 1.8301 40 1 4.3691 1.9554 2.4035 41 1 6.0628 2.1520 2.9148 42 1 5.7467 0.3983 4.6386 43 1 4.0531 0.2012 4.1278 44 1 3.8433 0.3942 7.7956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001620615380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:35 Heat of formation + Delta-G solvation = 54.477361 kcal Electronic energy + Delta-G solvation = -22298.082354 eV Core-core repulsion = 19250.952173 eV Total energy + Delta-G solvation = -3047.130180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15590 -38.88368 -34.65642 -33.09746 -32.69556 -31.47263 -30.49244 -29.50395 -26.87683 -26.49636 -24.35101 -23.33240 -21.96654 -20.66165 -20.35224 -19.87349 -18.33977 -17.15840 -16.30339 -15.34764 -15.11892 -14.67739 -14.49334 -14.25626 -14.02419 -13.71665 -13.62563 -13.17334 -12.90094 -12.82892 -12.66646 -12.44084 -12.09036 -11.84755 -11.81198 -11.16081 -11.09127 -10.80529 -10.69799 -10.64160 -10.55308 -10.49304 -10.25622 -10.12166 -9.52392 -9.35295 -9.10995 -8.91134 -8.36094 -8.30086 -7.68335 -5.95046 -3.97244 2.09275 2.99706 3.07231 3.33198 3.39134 3.42844 4.22629 4.49084 4.68374 4.87828 4.96354 5.05957 5.11999 5.22803 5.38873 5.39943 5.40718 5.55388 5.64423 5.76717 5.78502 5.86369 5.89123 5.93748 5.99686 6.05140 6.07810 6.18597 6.24421 6.28591 6.31174 6.45698 6.53914 6.75040 6.82303 7.00132 7.16524 7.45924 7.53614 7.61149 7.73425 7.90299 8.01683 8.05535 8.49212 9.09778 9.66208 11.16074 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.005695 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.923812 B = 4915.006623 C = 6315.734433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.081 3.919 3 C -0.265 4.265 4 C 0.094 3.906 5 C 0.163 3.837 6 H 0.064 0.936 7 C -0.104 4.104 8 C -0.119 4.119 9 C -0.116 4.116 10 C 0.052 3.948 11 N -0.525 5.525 12 C 0.051 3.949 13 C -0.143 4.143 14 C 0.028 3.972 15 C -0.516 4.516 16 H 0.052 0.948 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.263 5.263 24 N -0.482 5.482 25 H 0.433 0.567 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.014 0.986 43 H 0.012 0.988 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 0.703 -18.398 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C -0.295 4.295 4 C -0.073 4.073 5 C 0.053 3.947 6 H 0.082 0.918 7 C -0.143 4.143 8 C -0.157 4.157 9 C -0.154 4.154 10 C -0.076 4.076 11 N -0.249 5.249 12 C -0.076 4.076 13 C -0.182 4.182 14 C -0.010 4.010 15 C -0.555 4.555 16 H 0.071 0.929 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.085 5.085 24 N -0.190 5.190 25 H 0.277 0.723 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.161 0.839 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.466 -0.841 -18.553 18.630 hybrid contribution -1.243 1.617 1.450 2.502 sum -2.709 0.776 -17.103 17.334 Atomic orbital electron populations 1.20426 0.87628 1.04028 1.02873 1.21003 0.94391 0.87888 1.01452 1.21040 0.91673 0.99075 1.17671 1.21994 0.94675 0.91652 0.99007 1.19969 0.86178 0.92730 0.95837 0.91796 1.21575 0.97489 0.99886 0.95329 1.21576 0.95292 0.98349 1.00504 1.21600 0.97406 1.00044 0.96363 1.22087 0.93095 0.96177 0.96243 1.62170 1.03029 1.36077 1.23616 1.22408 1.01451 0.97861 0.85929 1.22205 0.99613 0.97636 0.98736 1.18972 0.96402 0.96123 0.89466 1.21266 1.44497 0.93662 0.96056 0.92936 1.25022 0.95829 0.95453 0.98170 1.69974 1.48734 1.18882 1.15992 0.86632 0.78821 0.82771 0.80023 1.20719 1.21220 1.19908 1.77459 0.94848 1.12464 1.23748 1.46405 1.04554 1.07968 1.60110 0.72334 0.90535 0.91203 0.89600 0.83926 0.91612 0.91147 0.92095 0.91955 0.91890 0.91348 0.94306 0.90781 0.91563 0.90048 0.93398 0.93599 0.96812 0.96925 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.43 36.01 0.38 -0.43 16 2 C 0.08 1.06 7.21 -82.26 -0.59 0.47 16 3 C -0.26 -3.94 10.65 -40.01 -0.43 -4.37 16 4 C 0.09 1.55 5.05 -82.41 -0.42 1.14 16 5 C 0.16 2.54 1.72 -68.88 -0.12 2.42 16 6 H 0.06 1.06 6.61 -51.93 -0.34 0.72 16 7 C -0.10 -1.32 5.36 -26.65 -0.14 -1.46 16 8 C -0.12 -1.32 6.00 -26.60 -0.16 -1.48 16 9 C -0.12 -1.36 6.09 -26.65 -0.16 -1.53 16 10 C 0.05 0.76 5.05 -3.83 -0.02 0.74 16 11 N -0.53 -8.73 4.58 -228.08 -1.04 -9.77 16 12 C 0.05 0.99 4.88 -3.82 -0.02 0.98 16 13 C -0.14 -3.16 4.45 -26.73 -0.12 -3.28 16 14 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 15 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 19 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 23 N -0.26 -4.48 10.83 33.67 0.36 -4.12 16 24 N -0.48 -6.66 7.36 33.48 0.25 -6.42 16 25 H 0.43 4.58 8.96 -182.61 -1.64 2.94 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.60 6.76 -51.93 -0.35 0.25 16 37 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 38 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 39 H 0.08 1.72 5.86 -51.93 -0.30 1.42 16 40 H 0.05 1.07 6.41 -51.93 -0.33 0.74 16 41 H 0.05 1.00 6.68 -51.93 -0.35 0.65 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -33.52 344.40 -10.64 -44.17 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.77 Total: 0.92 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.35 Total: -20.13 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.30 Total: -47.32 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.52 -10.64 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620615380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.643 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds