Wall clock time and date at job start Mon Mar 30 2020 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34120 * 125.99443 * 2 1 4 4 C 1.30498 * 109.25802 * 180.24438 * 3 2 1 5 5 C 1.50704 * 125.64789 * 179.77577 * 4 3 2 6 6 H 1.09007 * 109.90095 * 145.32673 * 5 4 3 7 7 C 1.53994 * 109.91528 * 266.42471 * 5 4 3 8 8 C 1.54595 * 105.13821 * 120.58098 * 7 5 4 9 9 C 1.54937 * 102.92134 * 21.95755 * 8 7 5 10 10 N 1.47897 * 109.92064 * 24.01972 * 5 4 3 11 11 C 1.46898 * 111.00333 * 94.80216 * 10 5 4 12 12 C 1.52995 * 109.47392 * 170.00323 * 11 10 5 13 13 C 1.53002 * 109.47382 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47069 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00077 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99758 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00101 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 120.00055 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47173 * 89.99898 * 18 16 14 20 20 H 1.48506 * 109.47149 * 210.00158 * 18 16 14 21 21 H 1.48497 * 109.47216 * 329.99787 * 18 16 14 22 22 N 1.35041 * 108.70104 * 359.75031 * 4 3 2 23 23 H 0.96991 * 126.39882 * 179.97438 * 22 4 3 24 24 C 1.34666 * 125.98502 * 179.81438 * 2 1 3 25 25 C 1.50706 * 126.59507 * 0.03264 * 24 2 1 26 26 H 1.08994 * 109.47542 * 270.18156 * 1 2 3 27 27 H 1.09000 * 109.46687 * 30.18188 * 1 2 3 28 28 H 1.09004 * 109.47277 * 150.17434 * 1 2 3 29 29 H 1.08998 * 110.30721 * 239.49795 * 7 5 4 30 30 H 1.09000 * 110.30592 * 1.66716 * 7 5 4 31 31 H 1.09001 * 110.72577 * 140.31205 * 8 7 5 32 32 H 1.08996 * 110.72394 * 263.60267 * 8 7 5 33 33 H 1.09004 * 110.66963 * 81.01843 * 9 8 7 34 34 H 1.08995 * 110.67186 * 204.15091 * 9 8 7 35 35 H 1.09004 * 109.47070 * 290.00149 * 11 10 5 36 36 H 1.08999 * 109.47135 * 49.99598 * 11 10 5 37 37 H 1.09004 * 109.46871 * 299.99948 * 12 11 10 38 38 H 1.08999 * 109.47573 * 59.99543 * 12 11 10 39 39 H 1.08999 * 109.46523 * 299.99826 * 13 12 11 40 40 H 1.09007 * 109.46706 * 59.99830 * 13 12 11 41 41 H 0.97007 * 120.00298 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.46995 * 269.70923 * 25 24 2 43 43 H 1.08994 * 109.46790 * 29.70610 * 25 24 2 44 44 H 1.08997 * 109.47305 * 149.71050 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0851 0.0000 4 6 3.5449 0.7093 -0.0053 5 6 4.7387 1.6292 -0.0119 6 1 5.5498 1.1887 0.5681 7 6 5.2027 1.8760 -1.4593 8 6 5.0981 3.4051 -1.6616 9 6 5.1434 3.9503 -0.2120 10 7 4.3652 2.9435 0.5542 11 6 4.6847 3.0099 1.9865 12 6 4.5206 4.4489 2.4795 13 6 4.8540 4.5181 3.9712 14 6 4.6929 5.9357 4.4566 15 1 4.3840 6.7098 3.7699 16 6 4.9398 6.2442 5.7775 17 7 4.7987 7.4811 6.2013 18 14 5.4747 4.9053 6.9652 19 1 6.9566 4.8099 6.9688 20 1 4.9966 5.2358 8.3318 21 1 4.8960 3.6057 6.5393 22 7 3.5912 -0.6403 -0.0032 23 1 4.3912 -1.1887 -0.0064 24 6 2.2983 -1.0897 0.0035 25 6 1.8471 -2.5276 0.0075 26 1 -0.3634 0.0033 1.0276 27 1 -0.3633 0.8884 -0.5167 28 1 -0.3634 -0.8916 -0.5111 29 1 6.2339 1.5471 -1.5873 30 1 4.5492 1.3562 -2.1599 31 1 5.9441 3.7765 -2.2399 32 1 4.1558 3.6670 -2.1428 33 1 6.1708 3.9984 0.1490 34 1 4.6680 4.9293 -0.1541 35 1 4.0098 2.3570 2.5400 36 1 5.7136 2.6867 2.1446 37 1 5.1955 5.1018 1.9261 38 1 3.4917 4.7720 2.3215 39 1 4.1793 3.8652 4.5249 40 1 5.8831 4.1952 4.1288 41 1 4.9728 7.6983 7.1306 42 1 1.7428 -2.8728 1.0361 43 1 0.8869 -2.6085 -0.5020 44 1 2.5852 -3.1414 -0.5087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655569156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:45 Heat of formation + Delta-G solvation = 19.684215 kcal Electronic energy + Delta-G solvation = -21603.321643 eV Core-core repulsion = 18554.682718 eV Total energy + Delta-G solvation = -3048.638924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.07287 -40.02654 -36.23494 -34.42537 -34.03011 -33.54359 -32.00148 -30.36874 -29.33180 -28.17433 -25.87857 -24.48365 -22.90958 -22.60486 -21.34570 -21.00465 -20.33588 -18.91742 -18.28345 -16.97850 -16.71801 -16.29631 -16.12731 -15.95308 -15.17398 -14.80301 -14.68146 -14.17175 -14.14674 -13.87838 -13.71825 -13.68827 -13.44237 -13.37884 -13.20122 -12.97224 -12.84596 -12.62117 -12.43786 -12.18677 -12.09331 -11.83890 -11.58678 -11.53973 -11.41801 -11.26931 -10.77767 -10.70818 -10.67118 -9.33688 -8.94300 -8.30644 -6.35013 1.08702 1.32808 1.36184 1.48314 2.07657 2.20339 2.34937 3.04097 3.05944 3.39683 3.66233 3.88128 3.94066 4.11017 4.18069 4.21680 4.27795 4.31573 4.40031 4.51679 4.59982 4.62091 4.71706 4.74117 4.82924 4.90285 4.92251 4.92391 5.01984 5.03179 5.06248 5.12193 5.16734 5.20490 5.29550 5.38303 5.48015 5.56594 5.64002 5.93524 5.97219 6.09152 6.28916 6.60058 6.72591 7.29350 7.35027 8.86519 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.004030 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.612018 B = 6946.359929 C = 7778.997436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.045 4.045 3 N -0.498 5.498 4 C 0.211 3.789 5 C 0.147 3.853 6 H 0.079 0.921 7 C -0.110 4.110 8 C -0.113 4.113 9 C 0.034 3.966 10 N -0.511 5.511 11 C 0.065 3.935 12 C -0.087 4.087 13 C -0.007 4.007 14 C -0.533 4.533 15 H 0.029 0.971 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.954 3.046 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.251 1.251 22 N -0.558 5.558 23 H 0.429 0.571 24 C -0.024 4.024 25 C -0.070 4.070 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.039 0.961 39 H 0.013 0.987 40 H 0.022 0.978 41 H 0.267 0.733 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 -23.997 -17.672 29.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.173 4.173 3 N -0.218 5.218 4 C -0.055 4.055 5 C 0.037 3.963 6 H 0.097 0.903 7 C -0.149 4.149 8 C -0.151 4.151 9 C -0.093 4.093 10 N -0.235 5.235 11 C -0.063 4.063 12 C -0.125 4.125 13 C -0.045 4.045 14 C -0.571 4.571 15 H 0.048 0.952 16 C -0.194 4.194 17 N -0.593 5.593 18 Si 0.777 3.223 19 H -0.186 1.186 20 H -0.208 1.208 21 H -0.175 1.175 22 N -0.164 5.164 23 H 0.270 0.730 24 C -0.140 4.140 25 C -0.128 4.128 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.031 0.969 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.571 -22.972 -17.561 28.921 hybrid contribution 1.372 -0.722 1.146 1.928 sum 0.801 -23.694 -16.415 28.836 Atomic orbital electron populations 1.20032 0.86855 1.02927 1.02098 1.21168 0.97776 0.88618 1.09788 1.70171 1.01003 1.31348 1.19255 1.23009 0.94847 0.81803 1.05792 1.20698 0.89303 0.88474 0.97875 0.90289 1.22421 1.02404 0.97198 0.92857 1.22443 1.02904 0.94445 0.95309 1.23259 0.96209 0.96077 0.93781 1.64339 1.54396 1.02436 1.02333 1.22160 0.98539 0.97212 0.88377 1.21298 1.00352 0.95042 0.95845 1.19470 0.96242 0.94702 0.94118 1.21478 1.45699 0.94659 0.95310 0.95233 1.26052 0.94969 0.97972 1.00373 1.70074 1.51365 1.20702 1.17109 0.85609 0.79433 0.79858 0.77442 1.18596 1.20781 1.17487 1.43013 1.08717 1.07227 1.57407 0.73044 1.21510 0.83383 0.98467 1.10610 1.20320 1.02822 0.86115 1.03542 0.91823 0.92668 0.88903 0.88018 0.91261 0.88362 0.91808 0.92754 0.91098 0.92775 0.93783 0.92548 0.94167 0.96873 0.95978 0.92428 0.90273 0.88806 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.33 10.22 71.24 0.73 -0.60 16 2 C -0.04 -1.22 7.09 41.39 0.29 -0.93 16 3 N -0.50 -16.62 11.02 -176.29 -1.94 -18.56 16 4 C 0.21 5.67 6.92 138.13 0.96 6.63 16 5 C 0.15 3.57 3.01 44.31 0.13 3.70 16 6 H 0.08 1.64 7.58 -2.38 -0.02 1.63 16 7 C -0.11 -2.02 6.56 31.47 0.21 -1.81 16 8 C -0.11 -2.32 7.06 31.80 0.22 -2.09 16 9 C 0.03 0.92 5.10 86.65 0.44 1.36 16 10 N -0.51 -15.95 4.84 -862.44 -4.18 -20.13 16 11 C 0.07 2.28 5.03 86.30 0.43 2.71 16 12 C -0.09 -3.74 4.81 30.59 0.15 -3.60 16 13 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 14 C -0.53 -32.42 9.66 25.60 0.25 -32.18 16 15 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 16 C 0.00 0.17 5.47 84.65 0.46 0.64 16 17 N -0.95 -61.64 13.96 21.44 0.30 -61.34 16 18 Si 0.95 45.72 27.47 68.60 1.88 47.61 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 22 N -0.56 -11.02 6.15 -174.59 -1.07 -12.09 16 23 H 0.43 5.19 8.96 -92.71 -0.83 4.36 16 24 C -0.02 -0.49 7.24 40.95 0.30 -0.19 16 25 C -0.07 -0.77 10.23 71.24 0.73 -0.04 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.09 1.35 7.17 -2.39 -0.02 1.34 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.33 7.68 -2.39 -0.02 1.31 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.38 8.00 -2.38 -0.02 1.36 16 34 H 0.07 2.16 7.66 -2.39 -0.02 2.14 16 35 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.04 1.38 7.82 -2.39 -0.02 1.36 16 37 H 0.06 2.36 6.79 -2.38 -0.02 2.34 16 38 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 40 H 0.02 1.03 7.57 -2.38 -0.02 1.01 16 41 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 0.81 7.17 -2.39 -0.02 0.79 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -78.45 349.81 0.50 -77.95 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.09 Total: 13.22 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 5.42 Total: -26.65 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -6.90 Total: -112.13 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.61 kcal Total: -78.45 0.50 -77.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655569156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.634 kcal (2) G-P(sol) polarization free energy of solvation -78.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds