Wall clock time and date at job start Mon Mar 30 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 119.99804 * 2 1 4 4 N 1.32127 * 119.99334 * 180.25323 * 3 2 1 5 5 C 1.32154 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99512 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.47700 * 304.98381 * 6 5 4 8 8 N 1.46892 * 109.47630 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00574 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47332 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47009 * 300.00096 * 10 9 8 12 12 C 1.53001 * 109.46919 * 60.00155 * 10 9 8 13 13 C 1.52998 * 109.47204 * 180.02562 * 10 9 8 14 14 C 1.50699 * 109.47429 * 179.97438 * 13 10 9 15 15 H 1.07997 * 119.99802 * 0.02562 * 14 13 10 16 16 C 1.37868 * 120.00270 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00165 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00115 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47255 * 89.99963 * 18 16 14 20 20 H 1.48496 * 109.47374 * 209.99837 * 18 16 14 21 21 H 1.48501 * 109.47251 * 330.00086 * 18 16 14 22 22 C 1.38337 * 120.00458 * 0.02562 * 5 4 3 23 23 N 1.32124 * 119.99937 * 180.28111 * 2 1 3 24 24 H 1.09000 * 109.46964 * 269.72239 * 1 2 3 25 25 H 1.09003 * 109.47060 * 29.72052 * 1 2 3 26 26 H 1.08996 * 109.47300 * 149.72105 * 1 2 3 27 27 H 1.08001 * 120.00386 * 0.25864 * 3 2 1 28 28 H 1.08996 * 109.46796 * 64.98833 * 6 5 4 29 29 H 1.09003 * 109.46732 * 184.98041 * 6 5 4 30 30 H 1.09001 * 109.46968 * 300.00344 * 7 6 5 31 31 H 1.09001 * 109.47032 * 59.99545 * 7 6 5 32 32 H 1.00900 * 111.00038 * 56.04164 * 8 7 6 33 33 H 1.08997 * 109.46927 * 300.00037 * 9 8 7 34 34 H 1.08998 * 109.46891 * 59.99772 * 9 8 7 35 35 H 1.09000 * 109.47016 * 60.00035 * 11 10 9 36 36 H 1.09004 * 109.47083 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.47331 * 299.99584 * 11 10 9 38 38 H 1.08997 * 109.47350 * 59.99874 * 12 10 9 39 39 H 1.09004 * 109.46636 * 179.97438 * 12 10 9 40 40 H 1.09007 * 109.47070 * 299.99761 * 12 10 9 41 41 H 1.09006 * 109.47251 * 300.00052 * 13 10 9 42 42 H 1.08998 * 109.46964 * 59.99889 * 13 10 9 43 43 H 0.97001 * 120.00160 * 179.97438 * 17 16 14 44 44 H 1.08001 * 120.00175 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1984 -0.0051 5 6 4.1808 0.0539 -0.0106 6 6 5.6879 0.0539 -0.0158 7 6 6.1939 0.8842 -1.1969 8 7 7.6629 0.8837 -1.2023 9 6 8.1856 1.6727 -2.3258 10 6 9.7152 1.6492 -2.2975 11 6 10.2102 2.2483 -0.9796 12 6 10.2052 0.2047 -2.4171 13 6 10.2596 2.4714 -3.4673 14 6 11.7661 2.4488 -3.4392 15 1 12.2836 1.9022 -2.6647 16 6 12.4838 3.1250 -4.4027 17 7 13.7986 3.1048 -4.3785 18 14 11.5889 4.0698 -5.7428 19 1 11.3544 5.4653 -5.2923 20 1 12.4146 4.0803 -6.9770 21 1 10.2861 3.4151 -6.0244 22 6 3.4892 -1.1442 -0.0117 23 7 2.1676 -1.1442 -0.0056 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 0.8925 -0.5095 26 1 -0.3634 -0.8874 -0.5181 27 1 1.6589 2.1338 0.0042 28 1 6.0544 0.4857 0.9155 29 1 6.0509 -0.9697 -0.1092 30 1 5.8274 0.4524 -2.1282 31 1 5.8309 1.9078 -1.1035 32 1 8.0241 -0.0582 -1.2234 33 1 7.8325 1.2461 -3.2646 34 1 7.8367 2.7018 -2.2404 35 1 9.8223 1.6628 -0.1460 36 1 11.2999 2.2319 -0.9597 37 1 9.8611 3.2773 -0.8945 38 1 9.8525 -0.2221 -3.3560 39 1 11.2950 0.1880 -2.3975 40 1 9.8174 -0.3808 -1.5834 41 1 9.9069 2.0450 -4.4065 42 1 9.9104 3.5004 -3.3817 43 1 14.3036 3.5802 -5.0566 44 1 4.0291 -2.0795 -0.0167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657487139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:48 Heat of formation + Delta-G solvation = 22.991679 kcal Electronic energy + Delta-G solvation = -20811.141328 eV Core-core repulsion = 17762.645826 eV Total energy + Delta-G solvation = -3048.495502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46444 -37.89194 -35.86907 -34.40250 -33.37061 -32.21471 -30.64757 -27.85376 -27.04186 -26.35335 -25.07242 -24.91922 -23.16744 -21.80234 -21.47083 -18.05244 -17.83044 -16.79018 -16.58294 -16.09557 -15.90830 -15.26990 -14.68844 -14.25654 -13.95345 -13.80366 -13.45056 -13.34107 -13.00092 -12.91560 -12.62535 -12.41400 -12.35004 -12.09915 -11.82014 -11.70248 -11.40363 -11.27881 -11.02836 -10.89798 -10.81704 -10.48092 -10.33574 -9.77015 -9.67324 -9.40285 -9.32547 -9.20077 -8.87927 -8.48043 -8.17165 -5.98342 -3.94334 0.43705 0.83201 3.32324 3.33679 3.41152 3.44755 3.65593 3.86325 4.08104 4.26627 4.49906 4.55178 4.68882 4.90988 5.01332 5.09945 5.15747 5.17841 5.26521 5.34824 5.43987 5.55092 5.60418 5.67289 5.86697 5.90592 5.99416 6.08999 6.17468 6.27718 6.43861 6.61600 6.71094 6.82353 6.99019 7.09294 7.15041 7.21512 7.29952 7.35316 7.48361 7.49128 7.63654 7.87303 8.61658 9.07652 9.64917 11.14742 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035711 B = 0.002720 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.893377 B =10291.285589 C =10697.411835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.065 3.935 3 C 0.056 3.944 4 N -0.430 5.430 5 C 0.082 3.918 6 C -0.065 4.065 7 C 0.067 3.933 8 N -0.685 5.685 9 C 0.069 3.931 10 C -0.049 4.049 11 C -0.118 4.118 12 C -0.131 4.131 13 C -0.005 4.005 14 C -0.506 4.506 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.267 1.267 22 C 0.056 3.944 23 N -0.439 5.439 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.168 0.832 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.080 0.920 32 H 0.338 0.662 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.261 0.739 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.619 -7.422 9.369 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.075 4.075 3 C -0.104 4.104 4 N -0.144 5.144 5 C -0.058 4.058 6 C -0.103 4.103 7 C -0.063 4.063 8 N -0.317 5.317 9 C -0.060 4.060 10 C -0.049 4.049 11 C -0.175 4.175 12 C -0.188 4.188 13 C -0.043 4.043 14 C -0.544 4.544 15 H 0.096 0.904 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.703 3.297 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.104 4.104 23 N -0.154 5.154 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.185 0.815 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.157 0.843 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -24.412 -6.837 9.718 27.150 hybrid contribution -0.577 0.026 -1.628 1.727 sum -24.990 -6.811 8.090 27.135 Atomic orbital electron populations 1.20669 0.87762 1.03907 1.03416 1.22324 0.98508 0.89800 0.96872 1.23649 0.90681 0.99199 0.96914 1.68295 1.08503 1.29452 1.08158 1.22306 0.98274 0.89551 0.95675 1.20502 0.86615 1.01764 1.01465 1.21819 0.88866 1.00662 0.94907 1.60535 1.05651 1.18673 1.46849 1.22125 0.96471 0.97466 0.89951 1.20419 0.90855 0.96075 0.97562 1.21620 1.01352 0.99105 0.95466 1.21786 1.02875 0.95316 0.98844 1.19637 0.97343 0.94417 0.92898 1.21134 0.89116 1.31456 1.12678 0.90399 1.25019 0.94683 0.96307 0.97647 1.69908 1.05440 1.43748 1.35455 0.86847 0.80142 0.80759 0.81908 1.20433 1.21598 1.19210 1.23645 0.90473 0.99334 0.96942 1.68287 1.08780 1.29419 1.08929 0.90065 0.90212 0.90238 0.81457 0.88497 0.89956 0.96001 0.90123 0.84268 0.95956 0.91541 0.93614 0.92133 0.94214 0.94184 0.91133 0.94516 0.96980 0.97141 0.92911 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.19 36.01 0.37 -0.15 16 2 C 0.07 0.57 6.79 -82.41 -0.56 0.01 16 3 C 0.06 0.50 10.88 -17.37 -0.19 0.31 16 4 N -0.43 -4.81 10.06 -9.29 -0.09 -4.90 16 5 C 0.08 0.84 6.18 -82.41 -0.51 0.34 16 6 C -0.06 -0.62 5.89 -27.88 -0.16 -0.78 16 7 C 0.07 0.81 5.55 -3.83 -0.02 0.79 16 8 N -0.69 -9.39 5.71 -113.79 -0.65 -10.04 16 9 C 0.07 1.13 4.65 -3.83 -0.02 1.12 16 10 C -0.05 -0.94 0.60 -154.51 -0.09 -1.03 16 11 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 12 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 13 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 14 C -0.51 -14.01 8.20 -34.44 -0.28 -14.29 16 15 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 16 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 17 N -0.91 -27.87 13.96 55.43 0.77 -27.09 16 18 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 22 C 0.06 0.53 10.85 -17.38 -0.19 0.34 16 23 N -0.44 -4.51 10.42 -9.29 -0.10 -4.61 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.62 7.89 -51.93 -0.41 0.21 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 32 H 0.34 4.29 6.77 -39.29 -0.27 4.03 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 36 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 40 H 0.04 0.55 6.57 -51.92 -0.34 0.21 16 41 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.17 1.12 7.95 -52.49 -0.42 0.70 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -32.02 350.94 -8.10 -40.12 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.40 Total: -0.16 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -1.25 Total: -15.87 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.07 Total: -46.64 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.02 -8.10 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657487139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.108 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds