Wall clock time and date at job start Mon Mar 30 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 119.99804 * 2 1 4 4 N 1.32127 * 119.99334 * 180.25323 * 3 2 1 5 5 C 1.32154 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99512 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.47700 * 304.98381 * 6 5 4 8 8 N 1.46892 * 109.47630 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00574 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47332 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47009 * 300.00096 * 10 9 8 12 12 C 1.53001 * 109.46919 * 60.00155 * 10 9 8 13 13 C 1.52998 * 109.47204 * 180.02562 * 10 9 8 14 14 C 1.50699 * 109.47429 * 179.97438 * 13 10 9 15 15 H 1.07997 * 119.99802 * 0.02562 * 14 13 10 16 16 C 1.37868 * 120.00270 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00165 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00115 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47255 * 89.99963 * 18 16 14 20 20 H 1.48496 * 109.47374 * 209.99837 * 18 16 14 21 21 H 1.48501 * 109.47251 * 330.00086 * 18 16 14 22 22 C 1.38337 * 120.00458 * 0.02562 * 5 4 3 23 23 N 1.32124 * 119.99937 * 180.28111 * 2 1 3 24 24 H 1.09000 * 109.46964 * 269.72239 * 1 2 3 25 25 H 1.09003 * 109.47060 * 29.72052 * 1 2 3 26 26 H 1.08996 * 109.47300 * 149.72105 * 1 2 3 27 27 H 1.08001 * 120.00386 * 0.25864 * 3 2 1 28 28 H 1.08996 * 109.46796 * 64.98833 * 6 5 4 29 29 H 1.09003 * 109.46732 * 184.98041 * 6 5 4 30 30 H 1.09001 * 109.46968 * 300.00344 * 7 6 5 31 31 H 1.09001 * 109.47032 * 59.99545 * 7 6 5 32 32 H 1.00900 * 111.00038 * 56.04164 * 8 7 6 33 33 H 1.08997 * 109.46927 * 300.00037 * 9 8 7 34 34 H 1.08998 * 109.46891 * 59.99772 * 9 8 7 35 35 H 1.09000 * 109.47016 * 60.00035 * 11 10 9 36 36 H 1.09004 * 109.47083 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.47331 * 299.99584 * 11 10 9 38 38 H 1.08997 * 109.47350 * 59.99874 * 12 10 9 39 39 H 1.09004 * 109.46636 * 179.97438 * 12 10 9 40 40 H 1.09007 * 109.47070 * 299.99761 * 12 10 9 41 41 H 1.09006 * 109.47251 * 300.00052 * 13 10 9 42 42 H 1.08998 * 109.46964 * 59.99889 * 13 10 9 43 43 H 0.97001 * 120.00160 * 179.97438 * 17 16 14 44 44 H 1.08001 * 120.00175 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1984 -0.0051 5 6 4.1808 0.0539 -0.0106 6 6 5.6879 0.0539 -0.0158 7 6 6.1939 0.8842 -1.1969 8 7 7.6629 0.8837 -1.2023 9 6 8.1856 1.6727 -2.3258 10 6 9.7152 1.6492 -2.2975 11 6 10.2102 2.2483 -0.9796 12 6 10.2052 0.2047 -2.4171 13 6 10.2596 2.4714 -3.4673 14 6 11.7661 2.4488 -3.4392 15 1 12.2836 1.9022 -2.6647 16 6 12.4838 3.1250 -4.4027 17 7 13.7986 3.1048 -4.3785 18 14 11.5889 4.0698 -5.7428 19 1 11.3544 5.4653 -5.2923 20 1 12.4146 4.0803 -6.9770 21 1 10.2861 3.4151 -6.0244 22 6 3.4892 -1.1442 -0.0117 23 7 2.1676 -1.1442 -0.0056 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 0.8925 -0.5095 26 1 -0.3634 -0.8874 -0.5181 27 1 1.6589 2.1338 0.0042 28 1 6.0544 0.4857 0.9155 29 1 6.0509 -0.9697 -0.1092 30 1 5.8274 0.4524 -2.1282 31 1 5.8309 1.9078 -1.1035 32 1 8.0241 -0.0582 -1.2234 33 1 7.8325 1.2461 -3.2646 34 1 7.8367 2.7018 -2.2404 35 1 9.8223 1.6628 -0.1460 36 1 11.2999 2.2319 -0.9597 37 1 9.8611 3.2773 -0.8945 38 1 9.8525 -0.2221 -3.3560 39 1 11.2950 0.1880 -2.3975 40 1 9.8174 -0.3808 -1.5834 41 1 9.9069 2.0450 -4.4065 42 1 9.9104 3.5004 -3.3817 43 1 14.3036 3.5802 -5.0566 44 1 4.0291 -2.0795 -0.0167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657487139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:48 Heat of formation + Delta-G solvation = 1.627012 kcal Electronic energy + Delta-G solvation = -20812.067770 eV Core-core repulsion = 17762.645826 eV Total energy + Delta-G solvation = -3049.421943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.12689 -39.30099 -36.86623 -35.39432 -34.45800 -33.86502 -31.54834 -29.60764 -28.01227 -27.89598 -26.23809 -25.70707 -24.31284 -23.29197 -22.31144 -19.45287 -18.86491 -18.71785 -17.27729 -17.00428 -16.69364 -16.33055 -16.02014 -15.81005 -15.25216 -15.09143 -14.70055 -14.22522 -14.14852 -13.96055 -13.82423 -13.54161 -13.35090 -13.10271 -12.99362 -12.75740 -12.66721 -12.53078 -12.46826 -12.24361 -12.16729 -12.07730 -11.93041 -11.70689 -11.34824 -10.99378 -10.82105 -10.69950 -10.00639 -9.94772 -9.29728 -8.21588 -6.21570 -0.21244 0.14452 1.35476 1.36647 1.47734 2.39240 2.65303 3.00882 3.13253 3.24216 3.31377 3.54840 3.86878 4.00713 4.12975 4.16689 4.23412 4.32395 4.35800 4.38147 4.55076 4.67994 4.74611 4.76148 4.79693 4.85038 4.92262 5.04054 5.06821 5.10916 5.11846 5.16254 5.20735 5.38199 5.46284 5.48171 5.54366 5.62878 5.77555 5.82895 6.08861 6.33713 6.42200 6.57078 6.82798 6.85658 7.40753 8.94498 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035711 B = 0.002720 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.893377 B =10291.285589 C =10697.411835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.062 3.938 3 C 0.048 3.952 4 N -0.458 5.458 5 C 0.067 3.933 6 C -0.055 4.055 7 C 0.074 3.926 8 N -0.683 5.683 9 C 0.081 3.919 10 C -0.048 4.048 11 C -0.110 4.110 12 C -0.125 4.125 13 C -0.005 4.005 14 C -0.501 4.501 15 H 0.046 0.954 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.940 3.060 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.251 1.251 22 C 0.053 3.947 23 N -0.463 5.463 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.194 0.806 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.022 0.978 31 H 0.064 0.936 32 H 0.347 0.653 33 H 0.025 0.975 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.035 0.965 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.012 0.988 42 H 0.009 0.991 43 H 0.262 0.738 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.532 -7.910 9.473 30.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.078 4.078 3 C -0.113 4.113 4 N -0.173 5.173 5 C -0.073 4.073 6 C -0.094 4.094 7 C -0.055 4.055 8 N -0.316 5.316 9 C -0.049 4.049 10 C -0.049 4.049 11 C -0.167 4.167 12 C -0.182 4.182 13 C -0.043 4.043 14 C -0.540 4.540 15 H 0.064 0.936 16 C -0.196 4.196 17 N -0.596 5.596 18 Si 0.765 3.235 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.174 1.174 22 C -0.106 4.106 23 N -0.178 5.178 24 H 0.111 0.889 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.210 0.790 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.167 0.833 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.030 0.970 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -27.344 -7.342 9.835 29.972 hybrid contribution 0.300 0.144 -1.573 1.608 sum -27.044 -7.198 8.262 29.180 Atomic orbital electron populations 1.20777 0.85443 1.04864 1.04424 1.22869 1.00077 0.89379 0.95486 1.24105 0.90203 1.00484 0.96477 1.68270 1.09758 1.30297 1.08987 1.22389 0.98466 0.89763 0.96646 1.20423 0.86400 1.02613 0.99957 1.21736 0.87430 1.00301 0.96055 1.60446 1.06871 1.18978 1.45298 1.21840 0.93960 0.97885 0.91173 1.20349 0.93022 0.95899 0.95590 1.21528 0.99270 0.99421 0.96511 1.21707 1.00733 0.95193 1.00605 1.19616 0.94536 0.95237 0.94881 1.21419 0.91403 1.29895 1.11246 0.93557 1.25918 0.95396 0.97783 1.00480 1.70059 1.07221 1.45479 1.36812 0.85810 0.79447 0.79511 0.78756 1.19706 1.21379 1.17446 1.24001 0.90471 1.00005 0.96162 1.68357 1.09296 1.30303 1.09891 0.88861 0.88043 0.90498 0.78962 0.88980 0.87505 0.96020 0.91746 0.83275 0.95707 0.92093 0.91209 0.95229 0.94588 0.93747 0.94428 0.91062 0.96963 0.97240 0.92903 0.79100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.19 71.24 0.73 -0.06 16 2 C 0.06 0.97 6.79 42.55 0.29 1.26 16 3 C 0.05 0.77 10.88 84.68 0.92 1.70 16 4 N -0.46 -9.67 10.06 -183.29 -1.84 -11.51 16 5 C 0.07 1.27 6.18 42.54 0.26 1.53 16 6 C -0.06 -0.93 5.89 29.85 0.18 -0.76 16 7 C 0.07 1.63 5.55 86.30 0.48 2.11 16 8 N -0.68 -16.95 5.71 -513.93 -2.94 -19.88 16 9 C 0.08 2.50 4.65 86.30 0.40 2.90 16 10 C -0.05 -1.81 0.60 -52.18 -0.03 -1.84 16 11 C -0.11 -4.17 8.06 71.98 0.58 -3.59 16 12 C -0.13 -4.41 7.89 71.98 0.57 -3.84 16 13 C 0.00 -0.23 3.11 29.85 0.09 -0.13 16 14 C -0.50 -28.36 8.20 25.60 0.21 -28.15 16 15 H 0.05 2.86 5.92 -2.91 -0.02 2.84 16 16 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 17 N -0.95 -60.31 13.96 21.44 0.30 -60.01 16 18 Si 0.94 45.24 27.47 68.60 1.88 47.12 16 19 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 21 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 22 C 0.05 0.90 10.85 84.67 0.92 1.82 16 23 N -0.46 -8.77 10.42 -183.30 -1.91 -10.68 16 24 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.10 0.37 8.08 -2.39 -0.02 0.35 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 1.25 7.89 -2.39 -0.02 1.23 16 30 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 1.64 7.96 -2.39 -0.02 1.62 16 32 H 0.35 7.63 6.77 -89.69 -0.61 7.03 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 36 H 0.03 1.27 6.62 -2.39 -0.02 1.26 16 37 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.04 1.56 6.62 -2.39 -0.02 1.54 16 40 H 0.07 1.99 6.57 -2.38 -0.02 1.97 16 41 H 0.01 0.57 7.20 -2.38 -0.02 0.55 16 42 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 43 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.19 2.08 7.95 -2.91 -0.02 2.06 16 Total: -1.00 -70.44 350.94 1.86 -68.58 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.31 Total: 12.99 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 6.06 Total: -26.60 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -6.39 Total: -102.09 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -70.44 1.86 -68.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657487139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.203 kcal (2) G-P(sol) polarization free energy of solvation -70.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds