Wall clock time and date at job start Mon Mar 30 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 N 1.46495 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00475 * 274.73503 * 4 3 2 6 6 H 1.08002 * 119.99530 * 37.10534 * 5 4 3 7 7 C 1.38803 * 120.00258 * 217.09984 * 5 4 3 8 8 N 1.31622 * 120.00218 * 22.79873 * 7 5 4 9 9 Si 1.86802 * 120.00006 * 202.79423 * 7 5 4 10 10 H 1.48495 * 109.47201 * 60.00236 * 9 7 5 11 11 H 1.48507 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47092 * 299.99898 * 9 7 5 13 13 C 1.46505 * 119.99746 * 94.73794 * 4 3 2 14 14 C 1.50700 * 109.47178 * 270.00203 * 13 4 3 15 15 C 1.39862 * 125.90302 * 94.99730 * 14 13 4 16 16 C 1.35311 * 107.92548 * 179.71744 * 15 14 13 17 17 N 1.34951 * 107.74399 * 0.42418 * 16 15 14 18 18 C 1.46498 * 126.03862 * 179.84090 * 17 16 15 19 19 C 1.54265 * 110.03316 * 32.62309 * 18 17 16 20 20 C 1.54964 * 104.15843 * 217.13862 * 19 18 17 21 21 C 1.54891 * 102.78120 * 37.88675 * 20 19 18 22 22 C 1.53882 * 110.03046 * 275.40644 * 18 17 16 23 23 N 1.30842 * 125.89429 * 274.97734 * 14 13 4 24 24 H 1.08997 * 109.47733 * 59.99391 * 1 2 3 25 25 H 1.09002 * 109.47190 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46688 * 299.99096 * 1 2 3 27 27 H 1.09006 * 109.46688 * 240.00904 * 2 1 3 28 28 H 1.08997 * 109.47733 * 120.00609 * 2 1 3 29 29 H 1.09006 * 109.46549 * 60.00819 * 3 2 1 30 30 H 1.08997 * 109.47262 * 300.00897 * 3 2 1 31 31 H 0.96998 * 120.00166 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47111 * 150.00083 * 13 4 3 33 33 H 1.09005 * 109.47099 * 30.00177 * 13 4 3 34 34 H 1.08008 * 126.03556 * 359.97438 * 15 14 13 35 35 H 1.07998 * 126.13427 * 180.27101 * 16 15 14 36 36 H 1.08999 * 110.01669 * 154.01780 * 18 17 16 37 37 H 1.09003 * 110.48716 * 335.78539 * 19 18 17 38 38 H 1.08997 * 110.48531 * 98.43197 * 19 18 17 39 39 H 1.09002 * 110.71867 * 279.57537 * 20 19 18 40 40 H 1.09004 * 110.76622 * 156.22528 * 20 19 18 41 41 H 1.08995 * 110.48499 * 203.40793 * 21 20 19 42 42 H 1.08995 * 110.59439 * 80.81557 * 21 20 19 43 43 H 1.08998 * 110.02934 * 238.57343 * 22 18 17 44 44 H 1.09003 * 110.03017 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3444 1.1809 6 1 3.8146 0.7125 1.9721 7 6 5.3677 2.0570 1.3616 8 7 5.6027 3.1332 0.6413 9 14 6.6186 1.4885 2.6271 10 1 7.0774 0.1174 2.2883 11 1 7.7799 2.4141 2.6257 12 1 5.9927 1.4824 3.9737 13 6 4.2369 1.5475 -1.2654 14 6 4.4878 0.1675 -1.8166 15 6 3.6931 -0.4973 -2.7562 16 6 4.2541 -1.7051 -2.9959 17 7 5.3593 -1.8050 -2.2280 18 6 6.2686 -2.9522 -2.1712 19 6 6.3394 -3.6392 -3.5506 20 6 6.4352 -5.1496 -3.2174 21 6 5.4932 -5.2915 -1.9960 22 6 5.7312 -4.0023 -1.1830 23 7 5.4869 -0.6154 -1.4992 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 6.4257 3.6309 0.7673 32 1 5.1894 2.0488 -1.0934 33 1 3.6475 2.1225 -1.9797 34 1 2.7932 -0.1127 -3.2130 35 1 3.8826 -2.4558 -3.6776 36 1 7.2625 -2.6257 -1.8652 37 1 5.4374 -3.4323 -4.1266 38 1 7.2246 -3.3110 -4.0953 39 1 7.4566 -5.4216 -2.9511 40 1 6.0788 -5.7529 -4.0523 41 1 5.7614 -6.1687 -1.4074 42 1 4.4539 -5.3526 -2.3185 43 1 6.4647 -4.1859 -0.3979 44 1 4.7941 -3.6580 -0.7454 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085175120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:30 Heat of formation + Delta-G solvation = 82.123628 kcal Electronic energy + Delta-G solvation = -22377.387967 eV Core-core repulsion = 19331.456619 eV Total energy + Delta-G solvation = -3045.931348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58799 -37.88984 -35.96021 -32.89710 -31.89838 -30.44598 -29.43065 -28.79251 -27.76949 -25.53194 -25.30548 -22.17048 -21.58318 -20.69306 -20.09371 -19.24431 -18.86079 -17.01335 -16.51731 -15.76850 -14.82413 -14.55729 -14.30927 -13.97225 -13.74536 -13.63453 -13.27942 -12.98578 -12.74917 -12.51467 -12.31704 -11.82786 -11.49090 -11.42402 -11.32175 -11.29062 -11.16216 -10.87550 -10.83893 -10.71000 -10.60103 -10.48101 -10.39391 -10.07130 -9.93742 -9.64698 -9.45800 -8.41548 -8.29983 -7.79310 -6.49266 -5.69623 -3.24336 2.61778 3.10840 3.46336 3.51737 3.58458 3.71462 4.32603 4.43503 4.61884 4.72678 5.15700 5.20339 5.24193 5.31454 5.38572 5.42386 5.44852 5.63166 5.64254 5.67913 5.73972 5.76906 5.86643 5.87022 6.06005 6.12775 6.16318 6.18349 6.31493 6.37064 6.48103 6.53463 6.64586 6.72701 6.75070 6.98039 7.07750 7.29543 7.54893 7.71366 7.75037 7.93424 8.58869 8.76136 9.28517 9.92463 10.49285 11.31725 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.006245 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.330812 B = 4482.197059 C = 5484.228019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.151 3.849 4 N -0.571 5.571 5 C -0.253 4.253 6 H 0.055 0.945 7 C 0.021 3.979 8 N -0.886 5.886 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.212 3.788 14 C 0.084 3.916 15 C -0.269 4.269 16 C 0.032 3.968 17 N -0.383 5.383 18 C 0.162 3.838 19 C -0.135 4.135 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.137 4.137 23 N -0.278 5.278 24 H 0.046 0.954 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.105 0.895 33 H 0.045 0.955 34 H 0.133 0.867 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 -13.828 -9.148 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.024 3.976 4 N -0.290 5.290 5 C -0.382 4.382 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.083 3.917 14 C -0.086 4.086 15 C -0.300 4.300 16 C -0.113 4.113 17 N -0.165 5.165 18 C 0.059 3.941 19 C -0.173 4.173 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.176 4.176 23 N -0.098 5.098 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.063 0.937 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.893 -13.903 -8.408 16.273 hybrid contribution -0.088 -0.515 0.123 0.537 sum -0.981 -14.418 -8.285 16.658 Atomic orbital electron populations 1.21718 0.97576 1.00111 1.00905 1.22160 0.93444 1.01226 1.01679 1.20899 0.85047 0.92868 0.98763 1.43648 0.99322 1.84248 1.01782 1.18819 1.05513 1.20775 0.93120 0.92739 1.25037 1.00461 0.94420 0.97994 1.69989 1.25402 1.14607 1.42779 0.86517 0.81362 0.78576 0.81206 1.20775 1.21724 1.20978 1.19488 1.00395 0.85936 0.85858 1.24121 0.91149 0.99680 0.93637 1.21366 1.04817 0.96183 1.07594 1.22099 0.91078 0.99198 0.98910 1.48929 1.20316 1.13849 1.33359 1.21734 0.93257 0.83314 0.95787 1.22815 1.03226 0.95390 0.95891 1.22478 1.00135 0.95207 0.98103 1.22359 0.99762 0.97444 0.96517 1.22619 1.02589 0.94355 0.98031 1.77598 1.23803 0.91692 1.16752 0.93449 0.94108 0.93370 0.92373 0.92972 0.93724 0.94712 0.93553 0.87752 0.93662 0.84868 0.82725 0.88439 0.90342 0.90611 0.91064 0.91080 0.91360 0.91511 0.90708 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.15 -2.80 6.24 -26.73 -0.17 -2.96 16 3 C 0.15 3.27 5.72 -4.04 -0.02 3.24 16 4 N -0.57 -14.57 2.42 -174.61 -0.42 -14.99 16 5 C -0.25 -7.14 9.45 -15.06 -0.14 -7.28 16 6 H 0.05 1.57 7.93 -52.49 -0.42 1.16 16 7 C 0.02 0.61 4.92 -17.43 -0.09 0.52 16 8 N -0.89 -26.04 11.53 55.49 0.64 -25.40 16 9 Si 0.89 22.81 29.61 -169.99 -5.03 17.77 16 10 H -0.28 -7.33 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.21 5.21 5.89 -5.19 -0.03 5.18 16 14 C 0.08 1.90 6.66 -82.41 -0.55 1.35 16 15 C -0.27 -5.04 9.44 -40.02 -0.38 -5.42 16 16 C 0.03 0.53 10.43 -17.22 -0.18 0.35 16 17 N -0.38 -6.94 3.45 -53.78 -0.19 -7.13 16 18 C 0.16 2.30 4.01 -66.81 -0.27 2.03 16 19 C -0.13 -1.41 6.38 -25.03 -0.16 -1.57 16 20 C -0.12 -1.02 6.91 -24.70 -0.17 -1.19 16 21 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16 22 C -0.14 -1.77 6.60 -25.61 -0.17 -1.94 16 23 N -0.28 -6.45 12.58 33.67 0.42 -6.03 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.15 6.64 -51.93 -0.34 0.81 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.03 0.70 7.84 -51.93 -0.41 0.29 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.10 2.92 5.54 -51.93 -0.29 2.64 16 33 H 0.05 1.02 7.86 -51.93 -0.41 0.62 16 34 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 35 H 0.16 1.93 6.90 -52.49 -0.36 1.57 16 36 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.08 0.81 5.95 -51.93 -0.31 0.50 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -31.56 350.87 -8.99 -40.55 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.57 Total: 0.82 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.12 Total: -10.89 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.46 Total: -53.55 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.56 -8.99 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085175120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.677 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds