Wall clock time and date at job start Mon Mar 30 2020 01:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 N 1.46495 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00475 * 274.73503 * 4 3 2 6 6 H 1.08002 * 119.99530 * 37.10534 * 5 4 3 7 7 C 1.38803 * 120.00258 * 217.09984 * 5 4 3 8 8 N 1.31622 * 120.00218 * 22.79873 * 7 5 4 9 9 Si 1.86802 * 120.00006 * 202.79423 * 7 5 4 10 10 H 1.48495 * 109.47201 * 60.00236 * 9 7 5 11 11 H 1.48507 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47092 * 299.99898 * 9 7 5 13 13 C 1.46505 * 119.99746 * 94.73794 * 4 3 2 14 14 C 1.50700 * 109.47178 * 270.00203 * 13 4 3 15 15 C 1.39862 * 125.90302 * 94.99730 * 14 13 4 16 16 C 1.35311 * 107.92548 * 179.71744 * 15 14 13 17 17 N 1.34951 * 107.74399 * 0.42418 * 16 15 14 18 18 C 1.46498 * 126.03862 * 179.84090 * 17 16 15 19 19 C 1.54265 * 110.03316 * 32.62309 * 18 17 16 20 20 C 1.54964 * 104.15843 * 217.13862 * 19 18 17 21 21 C 1.54891 * 102.78120 * 37.88675 * 20 19 18 22 22 C 1.53882 * 110.03046 * 275.40644 * 18 17 16 23 23 N 1.30842 * 125.89429 * 274.97734 * 14 13 4 24 24 H 1.08997 * 109.47733 * 59.99391 * 1 2 3 25 25 H 1.09002 * 109.47190 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46688 * 299.99096 * 1 2 3 27 27 H 1.09006 * 109.46688 * 240.00904 * 2 1 3 28 28 H 1.08997 * 109.47733 * 120.00609 * 2 1 3 29 29 H 1.09006 * 109.46549 * 60.00819 * 3 2 1 30 30 H 1.08997 * 109.47262 * 300.00897 * 3 2 1 31 31 H 0.96998 * 120.00166 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47111 * 150.00083 * 13 4 3 33 33 H 1.09005 * 109.47099 * 30.00177 * 13 4 3 34 34 H 1.08008 * 126.03556 * 359.97438 * 15 14 13 35 35 H 1.07998 * 126.13427 * 180.27101 * 16 15 14 36 36 H 1.08999 * 110.01669 * 154.01780 * 18 17 16 37 37 H 1.09003 * 110.48716 * 335.78539 * 19 18 17 38 38 H 1.08997 * 110.48531 * 98.43197 * 19 18 17 39 39 H 1.09002 * 110.71867 * 279.57537 * 20 19 18 40 40 H 1.09004 * 110.76622 * 156.22528 * 20 19 18 41 41 H 1.08995 * 110.48499 * 203.40793 * 21 20 19 42 42 H 1.08995 * 110.59439 * 80.81557 * 21 20 19 43 43 H 1.08998 * 110.02934 * 238.57343 * 22 18 17 44 44 H 1.09003 * 110.03017 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3444 1.1809 6 1 3.8146 0.7125 1.9721 7 6 5.3677 2.0570 1.3616 8 7 5.6027 3.1332 0.6413 9 14 6.6186 1.4885 2.6271 10 1 7.0774 0.1174 2.2883 11 1 7.7799 2.4141 2.6257 12 1 5.9927 1.4824 3.9737 13 6 4.2369 1.5475 -1.2654 14 6 4.4878 0.1675 -1.8166 15 6 3.6931 -0.4973 -2.7562 16 6 4.2541 -1.7051 -2.9959 17 7 5.3593 -1.8050 -2.2280 18 6 6.2686 -2.9522 -2.1712 19 6 6.3394 -3.6392 -3.5506 20 6 6.4352 -5.1496 -3.2174 21 6 5.4932 -5.2915 -1.9960 22 6 5.7312 -4.0023 -1.1830 23 7 5.4869 -0.6154 -1.4992 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 6.4257 3.6309 0.7673 32 1 5.1894 2.0488 -1.0934 33 1 3.6475 2.1225 -1.9797 34 1 2.7932 -0.1127 -3.2130 35 1 3.8826 -2.4558 -3.6776 36 1 7.2625 -2.6257 -1.8652 37 1 5.4374 -3.4323 -4.1266 38 1 7.2246 -3.3110 -4.0953 39 1 7.4566 -5.4216 -2.9511 40 1 6.0788 -5.7529 -4.0523 41 1 5.7614 -6.1687 -1.4074 42 1 4.4539 -5.3526 -2.3185 43 1 6.4647 -4.1859 -0.3979 44 1 4.7941 -3.6580 -0.7454 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085175120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:29 Heat of formation + Delta-G solvation = 64.917473 kcal Electronic energy + Delta-G solvation = -22378.134082 eV Core-core repulsion = 19331.456619 eV Total energy + Delta-G solvation = -3046.677463 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.02392 -38.95120 -37.77093 -34.63677 -33.45093 -32.18833 -30.84755 -29.73436 -29.19903 -27.30743 -26.92268 -23.87160 -22.80789 -21.83772 -21.55572 -20.61117 -20.36348 -18.60843 -18.12199 -16.90865 -16.72614 -16.00109 -15.73371 -15.53416 -15.30287 -14.96935 -14.72931 -14.47397 -14.10261 -13.90491 -13.69087 -13.30448 -13.02621 -12.95053 -12.67396 -12.60550 -12.54691 -12.22695 -12.15161 -12.11385 -12.05653 -11.93721 -11.86358 -11.73100 -11.51543 -11.31599 -11.13068 -10.48849 -9.95522 -9.23980 -8.57494 -7.84077 -5.43209 1.20050 1.37255 1.42944 1.49014 1.80481 2.09928 2.50767 3.26160 3.39821 3.55415 3.84860 3.86095 4.03144 4.09233 4.26401 4.29634 4.38242 4.41079 4.45420 4.49441 4.67741 4.68420 4.72454 4.81779 4.86166 4.97567 4.98376 5.00071 5.02792 5.14482 5.17206 5.20957 5.22058 5.27105 5.35774 5.39010 5.46522 5.64007 5.67277 5.70379 5.98071 6.43948 6.46844 7.14796 7.18941 7.87043 8.38442 9.12180 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.006245 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.330812 B = 4482.197059 C = 5484.228019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.148 3.852 4 N -0.586 5.586 5 C -0.257 4.257 6 H 0.041 0.959 7 C -0.022 4.022 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.293 1.293 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.217 3.783 14 C 0.066 3.934 15 C -0.284 4.284 16 C 0.055 3.945 17 N -0.377 5.377 18 C 0.147 3.853 19 C -0.126 4.126 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.136 4.136 23 N -0.338 5.338 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.252 0.748 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.153 0.847 35 H 0.205 0.795 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 -16.576 -10.998 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.023 3.977 4 N -0.306 5.306 5 C -0.387 4.387 6 H 0.058 0.942 7 C -0.220 4.220 8 N -0.554 5.554 9 Si 0.773 3.227 10 H -0.220 1.220 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.089 3.911 14 C -0.103 4.103 15 C -0.314 4.314 16 C -0.091 4.091 17 N -0.159 5.159 18 C 0.045 3.955 19 C -0.164 4.164 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.175 4.175 23 N -0.160 5.160 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.171 0.829 35 H 0.222 0.778 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.005 -16.657 -10.251 19.661 hybrid contribution 0.263 0.267 0.660 0.759 sum -1.742 -16.390 -9.592 19.070 Atomic orbital electron populations 1.21635 0.94046 1.01681 1.01996 1.21950 0.96363 0.98732 1.00042 1.21029 0.83050 0.94656 0.98968 1.43813 1.00824 1.84665 1.01310 1.18883 1.06094 1.19881 0.93857 0.94173 1.25590 1.01826 0.94676 0.99902 1.70086 1.25552 1.15505 1.44240 0.85712 0.79663 0.77335 0.79993 1.21995 1.21308 1.19753 1.19205 0.98563 0.87505 0.85861 1.23737 0.92449 0.98906 0.95183 1.21549 1.05580 0.96842 1.07395 1.22763 0.89376 0.99171 0.97764 1.49158 1.21210 1.13172 1.32354 1.22184 0.91878 0.82485 0.98959 1.22824 1.04004 0.96380 0.93226 1.22476 1.00449 0.93682 0.98220 1.22341 1.00622 0.95666 0.96611 1.22584 1.00744 0.95896 0.98226 1.77452 1.25295 0.94143 1.19151 0.91667 0.92297 0.92990 0.92778 0.95799 0.94918 0.92929 0.93914 0.91720 0.92515 0.82885 0.77798 0.90163 0.89418 0.89937 0.90274 0.88499 0.89897 0.90814 0.91109 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.13 -4.99 6.24 30.59 0.19 -4.80 16 3 C 0.15 6.48 5.72 86.38 0.49 6.98 16 4 N -0.59 -30.87 2.42 -706.33 -1.71 -32.58 16 5 C -0.26 -15.08 9.45 84.03 0.79 -14.28 16 6 H 0.04 2.43 7.93 -2.91 -0.02 2.41 16 7 C -0.02 -1.30 4.92 84.86 0.42 -0.89 16 8 N -0.91 -55.64 11.53 21.65 0.25 -55.39 16 9 Si 0.94 48.52 29.61 68.60 2.03 50.55 16 10 H -0.29 -15.45 7.11 99.48 0.71 -14.74 16 11 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 12 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 13 C 0.22 11.06 5.89 85.63 0.50 11.56 16 14 C 0.07 3.02 6.66 43.10 0.29 3.31 16 15 C -0.28 -10.26 9.44 21.99 0.21 -10.05 16 16 C 0.06 1.68 10.43 83.54 0.87 2.56 16 17 N -0.38 -13.46 3.45 -324.05 -1.12 -14.57 16 18 C 0.15 4.02 4.01 45.72 0.18 4.20 16 19 C -0.13 -2.22 6.38 31.69 0.20 -2.01 16 20 C -0.11 -1.39 6.91 31.91 0.22 -1.17 16 21 C -0.11 -1.82 6.83 31.67 0.22 -1.60 16 22 C -0.14 -3.38 6.60 31.32 0.21 -3.18 16 23 N -0.34 -16.17 12.58 -47.39 -0.60 -16.76 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.05 2.10 6.64 -2.38 -0.02 2.08 16 28 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.03 1.48 8.08 -2.38 -0.02 1.46 16 30 H 0.05 2.09 7.84 -2.39 -0.02 2.07 16 31 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.06 3.83 5.54 -2.39 -0.01 3.82 16 33 H 0.06 2.64 7.86 -2.38 -0.02 2.62 16 34 H 0.15 4.77 8.06 -2.91 -0.02 4.74 16 35 H 0.21 4.07 6.90 -2.91 -0.02 4.05 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.09 1.40 5.95 -2.39 -0.01 1.38 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 1.40 7.92 -2.39 -0.02 1.38 16 Total: -1.00 -72.70 350.87 5.32 -67.38 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.95 Total: 13.89 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.51 Total: -12.51 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -3.17 Total: -119.30 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -72.70 5.32 -67.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085175120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.298 kcal (2) G-P(sol) polarization free energy of solvation -72.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds