Wall clock time and date at job start Mon Mar 30 2020 02:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.50699 * 109.47221 * 170.00202 * 14 12 2 16 16 C 1.39871 * 125.89755 * 94.71317 * 15 14 12 17 17 C 1.35318 * 107.92145 * 179.86286 * 16 15 14 18 18 N 1.34949 * 107.74269 * 0.39692 * 17 16 15 19 19 C 1.46501 * 126.03773 * 179.74954 * 18 17 16 20 20 C 1.54268 * 110.03300 * 32.88201 * 19 18 17 21 21 C 1.54957 * 104.15806 * 217.13650 * 20 19 18 22 22 C 1.54893 * 102.78101 * 37.89060 * 21 20 19 23 23 C 1.53881 * 110.03110 * 275.66496 * 19 18 17 24 24 N 1.30835 * 125.89861 * 275.02102 * 15 14 12 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 30 30 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 31 31 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 32 32 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 33 33 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 34 34 H 1.07999 * 126.04186 * 359.97438 * 16 15 14 35 35 H 1.07998 * 126.13244 * 180.14459 * 17 16 15 36 36 H 1.08999 * 110.01670 * 154.27382 * 19 18 17 37 37 H 1.08999 * 110.48619 * 335.78677 * 20 19 18 38 38 H 1.08995 * 110.48330 * 98.42807 * 20 19 18 39 39 H 1.08994 * 110.72605 * 279.56826 * 21 20 19 40 40 H 1.09003 * 110.76389 * 156.22016 * 21 20 19 41 41 H 1.08996 * 110.48848 * 203.40250 * 22 21 20 42 42 H 1.09001 * 110.59628 * 80.81563 * 22 21 20 43 43 H 1.09006 * 110.02916 * 238.56889 * 23 19 18 44 44 H 1.08997 * 110.03215 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5793 16 6 1.9365 -1.4268 -4.4930 17 6 2.8992 -1.7359 -5.3924 18 7 4.0125 -1.0523 -5.0544 19 6 5.2973 -1.0959 -5.7572 20 6 5.0662 -1.3015 -7.2685 21 6 6.2265 -2.2306 -7.7064 22 6 6.3665 -3.1948 -6.5023 23 6 6.1240 -2.2989 -5.2701 24 7 3.7229 -0.2937 -3.9129 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7082 1.1610 3.4844 29 1 0.3491 -1.9549 -1.3693 30 1 1.8134 -2.5258 -2.2045 31 1 1.7059 -2.6221 -0.4301 32 1 0.6815 0.1053 -2.6087 33 1 2.1026 1.1189 -2.2604 34 1 0.9281 -1.8132 -4.4836 35 1 2.7963 -2.4120 -6.2282 36 1 5.8476 -0.1708 -5.5861 37 1 4.1045 -1.7832 -7.4453 38 1 5.1195 -0.3490 -7.7956 39 1 7.1434 -1.6598 -7.8528 40 1 5.9626 -2.7783 -8.6111 41 1 7.3681 -3.6234 -6.4711 42 1 5.6163 -3.9840 -6.5538 43 1 7.0760 -1.9575 -4.8634 44 1 5.5691 -2.8505 -4.5112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085175147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:51 Heat of formation + Delta-G solvation = 79.276208 kcal Electronic energy + Delta-G solvation = -21732.876168 eV Core-core repulsion = 18686.821346 eV Total energy + Delta-G solvation = -3046.054822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08522 -38.22535 -36.93525 -33.03538 -31.90645 -29.95899 -29.13521 -28.94398 -27.62813 -26.23475 -25.14208 -23.57252 -21.97022 -20.93134 -19.79294 -19.52118 -18.77714 -17.29678 -16.17037 -15.94642 -15.21789 -14.83087 -14.52026 -14.16589 -13.94843 -13.73179 -13.49951 -13.08439 -12.93626 -12.61351 -12.28921 -11.87723 -11.76127 -11.51017 -11.48394 -11.35710 -11.08840 -10.97664 -10.94235 -10.90757 -10.70899 -10.57902 -10.45001 -10.11469 -9.96447 -9.74757 -8.95407 -8.76548 -8.31695 -8.26064 -7.03120 -5.93784 -3.96477 2.16685 2.66851 3.14544 3.35074 3.42646 3.48226 4.08535 4.21908 4.48838 4.52563 4.86348 4.92699 4.98862 5.07720 5.12146 5.17916 5.25542 5.35193 5.39184 5.44597 5.52316 5.69905 5.74783 5.78824 5.93350 5.93796 5.98981 6.14280 6.21147 6.38778 6.41506 6.54305 6.75947 6.89963 6.97258 7.01851 7.19590 7.29570 7.54714 7.79306 7.92876 8.12782 8.24041 8.47522 8.68173 9.09929 9.68055 11.13498 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028593 B = 0.003590 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.030723 B = 7798.178871 C = 8332.695116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.526 5.526 13 C 0.035 3.965 14 C 0.130 3.870 15 C 0.098 3.902 16 C -0.266 4.266 17 C 0.044 3.956 18 N -0.373 5.373 19 C 0.160 3.840 20 C -0.135 4.135 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.138 4.138 24 N -0.278 5.278 25 H 0.032 0.968 26 H 0.007 0.993 27 H 0.088 0.912 28 H 0.259 0.741 29 H 0.019 0.981 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -6.228 -20.934 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.251 5.251 13 C -0.114 4.114 14 C 0.000 4.000 15 C -0.070 4.070 16 C -0.296 4.296 17 C -0.102 4.102 18 N -0.156 5.156 19 C 0.058 3.942 20 C -0.174 4.174 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.176 4.176 24 N -0.100 5.100 25 H 0.051 0.949 26 H 0.026 0.974 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.108 -5.534 -20.522 22.749 hybrid contribution -1.390 -0.848 0.593 1.733 sum 6.718 -6.382 -19.930 21.978 Atomic orbital electron populations 1.22416 1.00805 0.99474 1.00517 1.19337 0.89758 0.94549 0.85878 0.94271 1.21148 1.30147 1.12342 0.89580 0.91971 1.24920 0.95347 0.95184 0.98938 1.69896 1.37314 1.23189 1.23173 0.86475 0.78481 0.79685 0.82971 1.19791 1.21115 1.21241 1.62288 1.58976 1.02385 1.01413 1.22246 0.96312 0.91891 1.00902 1.20370 0.95435 0.97198 0.87018 1.22413 0.91419 0.96584 0.96577 1.21391 1.01313 1.07259 0.99630 1.22226 0.87479 0.99504 1.00962 1.48820 1.09407 1.34914 1.22408 1.21871 0.81403 1.00479 0.90477 1.22828 1.00192 1.01015 0.93360 1.22483 0.98134 0.97185 0.98156 1.22373 1.02048 0.97769 0.94006 1.22628 1.00535 0.95872 0.98611 1.77436 1.16133 1.16790 0.99593 0.94881 0.97384 0.89334 0.93151 0.96309 0.93673 0.91298 0.93714 0.90263 0.84132 0.81868 0.88046 0.90277 0.90408 0.90918 0.90900 0.91135 0.91385 0.90389 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.22 37.16 0.31 -3.93 16 2 C 0.21 5.46 2.31 -68.87 -0.16 5.30 16 3 H 0.04 1.11 7.93 -51.93 -0.41 0.70 16 4 C -0.49 -13.90 7.97 -34.44 -0.27 -14.18 16 5 H 0.06 1.78 7.10 -52.48 -0.37 1.41 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.93 11.32 55.43 0.63 -25.31 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.53 -12.02 4.69 -237.73 -1.12 -13.14 16 13 C 0.04 0.73 8.62 60.06 0.52 1.25 16 14 C 0.13 2.59 5.10 -4.97 -0.03 2.56 16 15 C 0.10 1.79 5.94 -82.41 -0.49 1.30 16 16 C -0.27 -4.06 9.62 -40.01 -0.38 -4.45 16 17 C 0.04 0.57 10.43 -17.22 -0.18 0.39 16 18 N -0.37 -5.36 3.44 -53.77 -0.19 -5.55 16 19 C 0.16 1.71 4.00 -66.81 -0.27 1.44 16 20 C -0.14 -1.03 6.38 -25.03 -0.16 -1.19 16 21 C -0.12 -0.73 6.91 -24.70 -0.17 -0.90 16 22 C -0.12 -0.88 6.83 -25.07 -0.17 -1.06 16 23 C -0.14 -1.35 6.60 -25.61 -0.17 -1.52 16 24 N -0.28 -5.19 12.58 33.67 0.42 -4.77 16 25 H 0.03 0.78 6.33 -51.93 -0.33 0.45 16 26 H 0.01 0.16 6.91 -51.93 -0.36 -0.20 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.37 6.21 -51.93 -0.32 0.05 16 30 H 0.04 0.86 6.31 -51.93 -0.33 0.53 16 31 H 0.07 1.52 6.86 -51.93 -0.36 1.17 16 32 H 0.04 0.84 7.06 -51.93 -0.37 0.48 16 33 H 0.08 1.62 7.93 -51.93 -0.41 1.21 16 34 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.16 1.50 6.91 -52.49 -0.36 1.14 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.59 5.96 -51.93 -0.31 0.28 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -31.28 339.98 -9.04 -40.32 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.17 Total: -0.03 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -1.72 Total: -13.47 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.25 Total: -48.76 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.28 -9.04 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085175147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.595 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds