Wall clock time and date at job start Mon Mar 30 2020 02:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47171 * 300.00251 * 3 2 1 6 6 H 1.48505 * 109.47303 * 60.00078 * 3 2 1 7 7 C 1.37884 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99566 * 165.72314 * 7 2 1 9 9 C 1.50701 * 119.99943 * 345.71803 * 7 2 1 10 10 C 1.53004 * 115.54904 * 324.68444 * 9 7 2 11 11 N 1.46899 * 109.46960 * 148.21362 * 10 9 7 12 12 C 1.46851 * 110.99704 * 161.66445 * 11 10 9 13 13 C 1.53053 * 109.50615 * 185.85398 * 12 11 10 14 14 C 1.53079 * 109.25756 * 300.85243 * 13 12 11 15 15 C 1.52972 * 109.47540 * 297.78156 * 14 13 12 16 16 C 1.53005 * 109.47205 * 179.97438 * 15 14 13 17 17 C 1.53013 * 109.45308 * 59.96434 * 16 15 14 18 18 C 1.52996 * 109.47121 * 299.95432 * 17 16 15 19 19 C 1.52937 * 109.53510 * 177.62979 * 14 13 12 20 20 C 1.53079 * 109.22713 * 57.66008 * 14 13 12 21 21 C 1.46843 * 110.99808 * 285.91642 * 11 10 9 22 22 C 1.52992 * 117.51740 * 110.38183 * 9 7 2 23 23 C 1.52992 * 117.49956 * 179.01376 * 9 7 2 24 24 H 0.96998 * 120.00177 * 5.00341 * 1 2 3 25 25 H 1.09002 * 109.47242 * 28.20718 * 10 9 7 26 26 H 1.09005 * 109.46867 * 268.20996 * 10 9 7 27 27 H 1.09001 * 109.46565 * 65.84132 * 12 11 10 28 28 H 1.08996 * 109.46364 * 305.86893 * 12 11 10 29 29 H 1.09004 * 109.50160 * 180.92164 * 13 12 11 30 30 H 1.08995 * 109.54430 * 60.81469 * 13 12 11 31 31 H 1.09003 * 109.47306 * 59.94753 * 15 14 13 32 32 H 1.08993 * 109.47392 * 299.94521 * 15 14 13 33 33 H 1.09003 * 109.47583 * 299.97019 * 16 15 14 34 34 H 1.08996 * 109.47625 * 179.97438 * 16 15 14 35 35 H 1.09000 * 109.46804 * 59.96072 * 17 16 15 36 36 H 1.09002 * 109.46640 * 179.97438 * 17 16 15 37 37 H 1.09004 * 109.46617 * 180.02562 * 18 17 16 38 38 H 1.08995 * 109.47430 * 300.01625 * 18 17 16 39 39 H 1.08990 * 109.47398 * 59.99136 * 19 14 13 40 40 H 1.09001 * 109.46593 * 299.99657 * 19 14 13 41 41 H 1.09007 * 109.50080 * 62.28865 * 20 14 13 42 42 H 1.09002 * 109.50262 * 182.41678 * 20 14 13 43 43 H 1.08996 * 109.46340 * 294.17180 * 21 11 10 44 44 H 1.08995 * 109.45985 * 54.14046 * 21 11 10 45 45 H 1.09000 * 117.49926 * 214.97215 * 22 9 7 46 46 H 1.09004 * 117.50164 * 359.97438 * 22 9 7 47 47 H 1.08999 * 117.50198 * 359.97319 * 23 9 7 48 48 H 1.08998 * 117.49891 * 144.99737 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0595 -1.2083 -0.2312 9 6 1.2859 -2.4792 0.3209 10 6 0.1814 -2.3720 1.3742 11 7 -0.8748 -3.3489 1.0773 12 6 -1.7159 -3.5893 2.2568 13 6 -2.7089 -4.7143 1.9557 14 6 -3.5760 -4.3155 0.7588 15 6 -4.3820 -3.0630 1.1078 16 6 -5.2481 -2.6640 -0.0887 17 6 -6.2046 -3.8087 -0.4296 18 6 -5.3976 -5.0604 -0.7799 19 6 -4.5309 -5.4596 0.4152 20 6 -2.6734 -4.0237 -0.4426 21 6 -1.6811 -2.9190 -0.0722 22 6 1.0801 -3.4782 -0.8194 23 6 2.1010 -3.7733 0.2812 24 1 -0.4850 0.8368 -0.0733 25 1 -0.2390 -1.3664 1.3588 26 1 0.5986 -2.5764 2.3602 27 1 -2.2622 -2.6793 2.5049 28 1 -1.0866 -3.8760 3.0993 29 1 -3.3441 -4.8816 2.8256 30 1 -2.1639 -5.6288 1.7217 31 1 -3.7000 -2.2481 1.3510 32 1 -5.0215 -3.2698 1.9658 33 1 -4.6089 -2.4568 -0.9470 34 1 -5.8227 -1.7719 0.1600 35 1 -6.8432 -4.0164 0.4290 36 1 -6.8221 -3.5245 -1.2817 37 1 -6.0791 -5.8757 -1.0232 38 1 -4.7589 -4.8526 -1.6383 39 1 -5.1703 -5.6692 1.2727 40 1 -3.9551 -6.3506 0.1651 41 1 -2.1274 -4.9269 -0.7154 42 1 -3.2832 -3.6978 -1.2853 43 1 -2.2274 -2.0119 0.1862 44 1 -1.0266 -2.7193 -0.9206 45 1 0.1578 -4.0591 -0.8193 46 1 1.4640 -3.2059 -1.8026 47 1 3.1569 -3.6953 0.0222 48 1 1.8504 -4.5483 1.0055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:13 Heat of formation + Delta-G solvation = 0.192796 kcal Electronic energy + Delta-G solvation = -23718.047205 eV Core-core repulsion = 20772.103412 eV Total energy + Delta-G solvation = -2945.943792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37392 -39.01649 -36.68935 -34.20522 -33.29251 -31.72849 -31.57328 -28.76838 -27.63211 -25.69243 -24.28553 -23.67249 -22.82595 -22.46516 -20.99409 -20.56306 -18.78198 -18.07571 -16.98895 -16.60693 -16.02202 -16.00530 -15.58822 -15.22784 -15.02783 -14.94842 -14.57017 -14.11840 -13.93695 -13.44104 -13.39466 -13.20869 -12.94245 -12.90213 -12.83733 -12.62775 -12.40950 -12.18624 -12.07815 -11.88979 -11.85446 -11.77669 -11.73864 -11.33579 -11.08923 -10.99905 -10.76036 -10.68626 -10.60605 -10.37555 -9.81717 -8.86539 -7.98756 -6.13258 1.38184 1.42939 1.53185 2.41526 2.98933 3.35552 3.72791 3.78842 3.83367 3.89464 4.17942 4.32975 4.34281 4.42841 4.49736 4.53659 4.56438 4.63343 4.67076 4.72747 4.77103 4.83794 4.84931 4.88320 4.93575 4.95669 5.06653 5.08009 5.15617 5.20364 5.22267 5.25576 5.27385 5.31914 5.35061 5.43929 5.46939 5.50351 5.52125 5.61064 5.62643 5.69884 5.72010 5.76051 6.08422 6.34095 6.59722 6.69058 6.89282 7.44350 8.91316 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.005404 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.304455 B = 5180.229251 C = 5720.141423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.031 3.969 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.514 4.514 8 H 0.046 0.954 9 C 0.029 3.971 10 C 0.084 3.916 11 N -0.531 5.531 12 C 0.053 3.947 13 C -0.095 4.095 14 C -0.049 4.049 15 C -0.106 4.106 16 C -0.121 4.121 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.100 4.100 20 C -0.099 4.099 21 C 0.079 3.921 22 C -0.188 4.188 23 C -0.191 4.191 24 H 0.259 0.741 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.010 0.990 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.049 0.951 47 H 0.064 0.936 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.020 -8.970 1.921 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.170 4.170 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.028 3.972 10 C -0.043 4.043 11 N -0.255 5.255 12 C -0.075 4.075 13 C -0.132 4.132 14 C -0.049 4.049 15 C -0.144 4.144 16 C -0.158 4.158 17 C -0.148 4.148 18 C -0.157 4.157 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.049 4.049 22 C -0.226 4.226 23 C -0.229 4.229 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.028 0.972 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.951 -9.273 1.871 16.038 hybrid contribution 0.644 2.012 0.055 2.113 sum -12.306 -7.261 1.927 14.418 Atomic orbital electron populations 1.69946 1.06641 1.26816 1.49028 1.25565 0.95611 1.01524 0.94281 0.85661 0.79134 0.80130 0.77596 1.19768 1.20778 1.20448 1.20891 0.94939 0.91643 1.47649 0.93565 1.19057 0.95243 0.87728 0.95202 1.21650 0.91635 0.96389 0.94637 1.61958 1.12446 1.45824 1.05266 1.22110 0.94919 0.97546 0.92900 1.21573 0.96225 0.97432 0.97988 1.20469 0.94362 0.95501 0.94583 1.21585 0.97669 0.96895 0.98224 1.21550 0.97845 0.98443 0.97998 1.21483 0.97302 0.94584 1.01474 1.21553 0.98444 0.97764 0.97979 1.21496 0.97053 0.96614 0.98595 1.21697 0.96077 0.98037 0.97809 1.21849 0.94142 0.95050 0.93882 1.22951 0.99806 1.07002 0.92801 1.22764 0.95179 1.01756 1.03176 0.93102 0.90895 0.95197 0.96569 0.91907 0.90320 0.91531 0.94348 0.91415 0.93194 0.92388 0.91386 0.91651 0.90811 0.92602 0.91119 0.91860 0.92325 0.91377 0.97162 0.92571 0.88507 0.93213 0.91705 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.55 10.75 21.45 0.23 -48.32 16 2 C 0.03 1.66 5.13 84.66 0.43 2.10 16 3 Si 0.95 43.16 29.56 68.60 2.03 45.19 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.51 -28.66 9.03 25.60 0.23 -28.43 16 8 H 0.05 2.62 7.85 -2.91 -0.02 2.60 16 9 C 0.03 1.45 2.14 -52.93 -0.11 1.34 16 10 C 0.08 4.07 4.85 86.30 0.42 4.48 16 11 N -0.53 -21.45 3.66 -896.32 -3.28 -24.73 16 12 C 0.05 1.82 5.19 86.33 0.45 2.26 16 13 C -0.09 -2.52 4.88 30.64 0.15 -2.37 16 14 C -0.05 -1.26 0.51 -52.16 -0.03 -1.28 16 15 C -0.11 -2.79 4.14 30.59 0.13 -2.66 16 16 C -0.12 -2.90 5.65 30.60 0.17 -2.73 16 17 C -0.11 -2.09 5.92 30.60 0.18 -1.91 16 18 C -0.12 -2.26 5.65 30.57 0.17 -2.08 16 19 C -0.10 -2.02 4.73 30.55 0.14 -1.88 16 20 C -0.10 -3.07 4.19 30.63 0.13 -2.94 16 21 C 0.08 3.17 4.01 86.33 0.35 3.51 16 22 C -0.19 -8.87 8.03 30.59 0.25 -8.63 16 23 C -0.19 -8.74 9.94 30.59 0.30 -8.44 16 24 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 25 H 0.07 3.95 4.92 -2.39 -0.01 3.94 16 26 H 0.03 1.41 7.82 -2.38 -0.02 1.40 16 27 H 0.02 0.58 6.51 -2.39 -0.02 0.57 16 28 H 0.06 2.08 7.94 -2.39 -0.02 2.06 16 29 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.25 4.91 -2.39 -0.01 1.23 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.37 6.39 -2.39 -0.02 1.35 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.06 1.17 6.50 -2.39 -0.02 1.15 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.07 2.03 4.85 -2.39 -0.01 2.02 16 43 H 0.01 0.45 6.51 -2.39 -0.02 0.44 16 44 H 0.06 2.64 5.53 -2.39 -0.01 2.63 16 45 H 0.10 4.35 5.49 -2.39 -0.01 4.34 16 46 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 48 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -56.62 338.67 3.25 -53.37 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.91 Total: 24.14 kcal Atomic # 6 Polarization: -53.01 SS G_CDS: 3.36 Total: -49.65 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -3.05 Total: -73.05 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -56.62 3.25 -53.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.563 kcal (2) G-P(sol) polarization free energy of solvation -56.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds