Wall clock time and date at job start Mon Mar 30 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36887 * 126.39774 * 2 1 4 4 C 1.34670 * 106.81794 * 180.25415 * 3 2 1 5 5 N 1.34133 * 108.01825 * 359.73989 * 4 3 2 6 6 C 1.30496 * 109.25937 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.65261 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46866 * 90.02585 * 7 6 5 9 9 H 1.09001 * 109.50290 * 305.07694 * 8 7 6 10 10 C 1.53119 * 109.50286 * 65.19923 * 8 7 6 11 11 C 1.53120 * 109.16035 * 177.59426 * 10 8 7 12 12 C 1.53041 * 109.27645 * 302.34648 * 11 10 8 13 13 N 1.46842 * 109.52608 * 59.17529 * 12 11 10 14 14 C 1.46902 * 111.00065 * 174.15947 * 13 12 11 15 15 C 1.53005 * 109.47281 * 314.21317 * 14 13 12 16 16 C 1.50698 * 109.46955 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00315 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99624 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99986 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99658 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47078 * 90.00013 * 20 18 16 22 22 H 1.48500 * 109.46774 * 209.99747 * 20 18 16 23 23 H 1.48493 * 109.47330 * 329.99300 * 20 18 16 24 24 C 1.46846 * 111.20098 * 298.25994 * 13 12 11 25 25 H 1.09005 * 109.47091 * 270.19223 * 1 2 3 26 26 H 1.09004 * 109.46842 * 30.18793 * 1 2 3 27 27 H 1.08996 * 109.47205 * 150.18830 * 1 2 3 28 28 H 1.07993 * 126.59548 * 359.96923 * 3 2 1 29 29 H 1.08004 * 125.99415 * 179.76336 * 4 3 2 30 30 H 1.08993 * 109.47512 * 330.02707 * 7 6 5 31 31 H 1.09000 * 109.47247 * 210.02416 * 7 6 5 32 32 H 1.08997 * 109.52139 * 297.49463 * 10 8 7 33 33 H 1.08997 * 109.52339 * 57.68882 * 10 8 7 34 34 H 1.08999 * 109.50668 * 182.40290 * 11 10 8 35 35 H 1.09002 * 109.53601 * 62.30474 * 11 10 8 36 36 H 1.08998 * 109.45843 * 299.16220 * 12 11 10 37 37 H 1.09001 * 109.45247 * 179.19030 * 12 11 10 38 38 H 1.08999 * 109.47074 * 74.21297 * 14 13 12 39 39 H 1.08995 * 109.47309 * 194.21293 * 14 13 12 40 40 H 1.08999 * 109.47050 * 299.99995 * 15 14 13 41 41 H 1.09007 * 109.46843 * 59.99381 * 15 14 13 42 42 H 0.97000 * 120.00260 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.46264 * 301.72926 * 24 13 12 44 44 H 1.08999 * 109.45382 * 181.75102 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 -0.0057 5 7 3.5095 -0.6903 -0.0033 6 6 2.2663 -1.0870 0.0031 7 6 1.8018 -2.5206 0.0071 8 6 1.6509 -3.0038 1.4510 9 1 2.5874 -2.8480 1.9866 10 6 0.5309 -2.2180 2.1386 11 6 0.3461 -2.7484 3.5630 12 6 0.0335 -4.2456 3.5080 13 7 1.1347 -4.9528 2.8421 14 6 0.9341 -6.4071 2.8940 15 6 0.5197 -6.8147 4.3093 16 6 0.3133 -8.3065 4.3623 17 1 0.4623 -8.9042 3.4752 18 6 -0.0668 -8.9084 5.5432 19 7 -0.2487 -8.1805 6.6233 20 14 -0.3219 -10.7577 5.6090 21 1 0.9562 -11.4211 5.9713 22 1 -1.3528 -11.0791 6.6285 23 1 -0.7723 -11.2429 4.2798 24 6 1.3003 -4.4935 1.4572 25 1 -0.3633 0.0034 1.0277 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3633 -0.8916 -0.5109 28 1 1.9614 2.1345 -0.0005 29 1 4.4369 1.2611 -0.0109 30 1 2.5341 -3.1413 -0.5090 31 1 0.8409 -2.5926 -0.5024 32 1 0.7965 -1.1615 2.1749 33 1 -0.3970 -2.3423 1.5804 34 1 -0.4785 -2.2219 4.0434 35 1 1.2613 -2.5885 4.1331 36 1 -0.8895 -4.4035 2.9502 37 1 -0.0844 -4.6292 4.5214 38 1 0.1516 -6.6913 2.1903 39 1 1.8628 -6.9117 2.6278 40 1 1.3021 -6.5305 5.0130 41 1 -0.4091 -6.3100 4.5755 42 1 -0.5158 -8.6039 7.4542 43 1 0.3714 -4.6502 0.9090 44 1 2.1026 -5.0573 0.9812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119993105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:04 Heat of formation + Delta-G solvation = 48.880772 kcal Electronic energy + Delta-G solvation = -21724.894547 eV Core-core repulsion = 18677.521681 eV Total energy + Delta-G solvation = -3047.372867 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.25264 -38.90152 -35.09891 -34.11205 -32.92890 -31.99403 -29.97604 -28.89112 -27.41496 -26.02041 -25.09375 -22.88672 -22.33104 -21.49500 -20.28406 -19.34801 -19.31895 -17.20353 -16.55675 -16.12765 -15.10013 -14.88906 -14.61663 -14.39811 -14.30240 -14.03280 -13.94327 -13.53584 -13.14185 -13.02400 -12.75513 -12.67879 -12.52729 -12.13338 -11.92713 -11.64502 -11.07588 -10.95430 -10.85324 -10.62658 -10.55377 -10.26713 -10.06324 -10.02241 -9.86184 -9.72690 -9.29645 -9.05464 -8.46062 -8.33810 -7.65118 -6.00130 -4.02271 1.90614 2.62024 3.05883 3.32383 3.38455 3.41495 4.22959 4.42225 4.43515 4.53338 4.64389 4.77751 4.86805 4.97265 5.04074 5.05797 5.21828 5.35818 5.36601 5.43137 5.56578 5.65756 5.68701 5.71147 5.80381 5.92422 5.98324 6.08249 6.12410 6.20280 6.34561 6.38548 6.45733 6.59953 6.64197 6.65863 6.95154 7.03469 7.54382 7.64491 7.82074 7.87032 8.03032 8.06161 8.43609 9.04479 9.61396 11.11267 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.003075 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.864342 B = 9102.758141 C = 9310.671892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.458 5.458 3 C -0.067 4.067 4 C -0.028 4.028 5 N -0.491 5.491 6 C 0.221 3.779 7 C -0.032 4.032 8 C -0.077 4.077 9 H 0.086 0.914 10 C -0.115 4.115 11 C -0.116 4.116 12 C 0.051 3.949 13 N -0.538 5.538 14 C 0.063 3.937 15 C 0.021 3.979 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.063 3.937 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.171 0.829 29 H 0.167 0.833 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.094 0.906 38 H 0.019 0.981 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.260 0.740 43 H 0.026 0.974 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 18.857 -13.815 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.141 5.141 3 C -0.200 4.200 4 C -0.176 4.176 5 N -0.209 5.209 6 C -0.041 4.041 7 C -0.071 4.071 8 C -0.097 4.097 9 H 0.105 0.895 10 C -0.153 4.153 11 C -0.154 4.154 12 C -0.077 4.077 13 N -0.263 5.263 14 C -0.063 4.063 15 C -0.016 4.016 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.066 4.066 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.188 0.812 29 H 0.185 0.815 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.112 0.888 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.720 18.443 -13.388 22.801 hybrid contribution -1.653 -0.463 -0.308 1.744 sum -0.933 17.980 -13.696 22.621 Atomic orbital electron populations 1.22159 0.76937 1.04425 1.03984 1.45296 1.07441 1.06663 1.54675 1.22642 0.91462 0.92448 1.13399 1.22288 0.96335 0.91315 1.07706 1.70275 1.18558 1.11878 1.20237 1.23255 0.85639 0.90874 1.04363 1.20105 1.01597 0.86854 0.98549 1.21186 1.00182 0.94880 0.93472 0.89547 1.21772 0.97834 0.98686 0.96966 1.21597 1.01825 0.95957 0.96009 1.22184 0.91471 0.92840 1.01171 1.61985 1.43466 1.06594 1.14231 1.22309 0.99072 0.84143 1.00822 1.19244 0.96771 0.95769 0.89842 1.21194 1.46223 0.92795 0.95801 0.92749 1.24994 0.95501 0.98116 0.95719 1.69964 1.47479 1.35321 1.00556 0.86589 0.77920 0.85734 0.77728 1.20604 1.21257 1.19937 1.22035 0.99742 0.94108 0.90689 0.90040 0.89857 0.89410 0.81157 0.81528 0.88540 0.90661 0.92713 0.92649 0.92097 0.91257 0.95757 0.88827 0.96317 0.91892 0.95681 0.96187 0.92996 0.95554 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 9.62 59.85 0.58 0.99 16 2 N -0.46 -4.45 2.80 -121.28 -0.34 -4.78 16 3 C -0.07 -0.63 11.58 -16.56 -0.19 -0.82 16 4 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 5 N -0.49 -6.93 11.25 -10.81 -0.12 -7.05 16 6 C 0.22 2.66 6.39 -155.41 -0.99 1.67 16 7 C -0.03 -0.34 5.00 -27.88 -0.14 -0.48 16 8 C -0.08 -0.98 2.34 -90.53 -0.21 -1.19 16 9 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 10 C -0.12 -1.35 3.82 -26.61 -0.10 -1.45 16 11 C -0.12 -1.62 6.09 -26.65 -0.16 -1.79 16 12 C 0.05 0.89 4.85 -3.83 -0.02 0.87 16 13 N -0.54 -9.84 4.81 -234.67 -1.13 -10.97 16 14 C 0.06 1.34 5.21 -3.82 -0.02 1.32 16 15 C 0.02 0.54 4.22 -27.88 -0.12 0.42 16 16 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.06 0.92 4.71 -3.83 -0.02 0.90 16 25 H 0.08 0.48 6.76 -51.93 -0.35 0.13 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.47 7.04 -51.93 -0.37 0.10 16 28 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.66 7.06 -51.93 -0.37 0.29 16 32 H 0.05 0.62 5.75 -51.93 -0.30 0.32 16 33 H 0.05 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 1.88 5.81 -51.93 -0.30 1.58 16 38 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.02 0.54 6.21 -51.93 -0.32 0.22 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -32.73 341.61 -10.20 -42.94 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.46 Total: -2.23 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.02 Total: -13.63 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.85 Total: -48.90 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.73 -10.20 -42.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119993105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.818 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds