Wall clock time and date at job start Mon Mar 30 2020 02:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36887 * 126.39774 * 2 1 4 4 C 1.34670 * 106.81794 * 180.25415 * 3 2 1 5 5 N 1.34133 * 108.01825 * 359.73989 * 4 3 2 6 6 C 1.30496 * 109.25937 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.65261 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46866 * 90.02585 * 7 6 5 9 9 H 1.09001 * 109.50290 * 305.07694 * 8 7 6 10 10 C 1.53119 * 109.50286 * 65.19923 * 8 7 6 11 11 C 1.53120 * 109.16035 * 177.59426 * 10 8 7 12 12 C 1.53041 * 109.27645 * 302.34648 * 11 10 8 13 13 N 1.46842 * 109.52608 * 59.17529 * 12 11 10 14 14 C 1.46902 * 111.00065 * 174.15947 * 13 12 11 15 15 C 1.53005 * 109.47281 * 314.21317 * 14 13 12 16 16 C 1.50698 * 109.46955 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00315 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99624 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99986 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99658 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47078 * 90.00013 * 20 18 16 22 22 H 1.48500 * 109.46774 * 209.99747 * 20 18 16 23 23 H 1.48493 * 109.47330 * 329.99300 * 20 18 16 24 24 C 1.46846 * 111.20098 * 298.25994 * 13 12 11 25 25 H 1.09005 * 109.47091 * 270.19223 * 1 2 3 26 26 H 1.09004 * 109.46842 * 30.18793 * 1 2 3 27 27 H 1.08996 * 109.47205 * 150.18830 * 1 2 3 28 28 H 1.07993 * 126.59548 * 359.96923 * 3 2 1 29 29 H 1.08004 * 125.99415 * 179.76336 * 4 3 2 30 30 H 1.08993 * 109.47512 * 330.02707 * 7 6 5 31 31 H 1.09000 * 109.47247 * 210.02416 * 7 6 5 32 32 H 1.08997 * 109.52139 * 297.49463 * 10 8 7 33 33 H 1.08997 * 109.52339 * 57.68882 * 10 8 7 34 34 H 1.08999 * 109.50668 * 182.40290 * 11 10 8 35 35 H 1.09002 * 109.53601 * 62.30474 * 11 10 8 36 36 H 1.08998 * 109.45843 * 299.16220 * 12 11 10 37 37 H 1.09001 * 109.45247 * 179.19030 * 12 11 10 38 38 H 1.08999 * 109.47074 * 74.21297 * 14 13 12 39 39 H 1.08995 * 109.47309 * 194.21293 * 14 13 12 40 40 H 1.08999 * 109.47050 * 299.99995 * 15 14 13 41 41 H 1.09007 * 109.46843 * 59.99381 * 15 14 13 42 42 H 0.97000 * 120.00260 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.46264 * 301.72926 * 24 13 12 44 44 H 1.08999 * 109.45382 * 181.75102 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 -0.0057 5 7 3.5095 -0.6903 -0.0033 6 6 2.2663 -1.0870 0.0031 7 6 1.8018 -2.5206 0.0071 8 6 1.6509 -3.0038 1.4510 9 1 2.5874 -2.8480 1.9866 10 6 0.5309 -2.2180 2.1386 11 6 0.3461 -2.7484 3.5630 12 6 0.0335 -4.2456 3.5080 13 7 1.1347 -4.9528 2.8421 14 6 0.9341 -6.4071 2.8940 15 6 0.5197 -6.8147 4.3093 16 6 0.3133 -8.3065 4.3623 17 1 0.4623 -8.9042 3.4752 18 6 -0.0668 -8.9084 5.5432 19 7 -0.2487 -8.1805 6.6233 20 14 -0.3219 -10.7577 5.6090 21 1 0.9562 -11.4211 5.9713 22 1 -1.3528 -11.0791 6.6285 23 1 -0.7723 -11.2429 4.2798 24 6 1.3003 -4.4935 1.4572 25 1 -0.3633 0.0034 1.0277 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3633 -0.8916 -0.5109 28 1 1.9614 2.1345 -0.0005 29 1 4.4369 1.2611 -0.0109 30 1 2.5341 -3.1413 -0.5090 31 1 0.8409 -2.5926 -0.5024 32 1 0.7965 -1.1615 2.1749 33 1 -0.3970 -2.3423 1.5804 34 1 -0.4785 -2.2219 4.0434 35 1 1.2613 -2.5885 4.1331 36 1 -0.8895 -4.4035 2.9502 37 1 -0.0844 -4.6292 4.5214 38 1 0.1516 -6.6913 2.1903 39 1 1.8628 -6.9117 2.6278 40 1 1.3021 -6.5305 5.0130 41 1 -0.4091 -6.3100 4.5755 42 1 -0.5158 -8.6039 7.4542 43 1 0.3714 -4.6502 0.9090 44 1 2.1026 -5.0573 0.9812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119993105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:03 Heat of formation + Delta-G solvation = 28.734177 kcal Electronic energy + Delta-G solvation = -21725.768169 eV Core-core repulsion = 18677.521681 eV Total energy + Delta-G solvation = -3048.246489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.01737 -40.18296 -36.51341 -34.96963 -34.67906 -33.27517 -31.42590 -30.24905 -28.07346 -26.96012 -26.83900 -24.51237 -23.56220 -22.27073 -21.64137 -20.67569 -20.25163 -18.63595 -17.89649 -17.07641 -16.56856 -16.24885 -15.93994 -15.82494 -15.43441 -15.20309 -14.92573 -14.41873 -14.26143 -14.24552 -13.89101 -13.77337 -13.61460 -13.29048 -13.20463 -12.94577 -12.81968 -12.71088 -12.40858 -12.06527 -11.97645 -11.70723 -11.54057 -11.31605 -11.09856 -10.98625 -10.87305 -10.53708 -10.47808 -9.24401 -9.12164 -8.20479 -6.31690 1.16018 1.40061 1.41779 1.52550 1.98649 2.21824 2.40257 3.06996 3.12907 3.49426 3.82030 3.87891 3.93599 4.00269 4.07557 4.25605 4.39799 4.42527 4.44036 4.51066 4.52321 4.57289 4.62272 4.68172 4.73799 4.79312 4.84547 4.85570 4.95110 5.02167 5.05213 5.12049 5.19996 5.31110 5.41356 5.44330 5.48893 5.67054 5.79049 5.90745 6.10807 6.31586 6.35432 6.39417 6.85078 7.24088 7.37324 8.91501 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.003075 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.864342 B = 9102.758141 C = 9310.671892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.455 5.455 3 C -0.051 4.051 4 C -0.063 4.063 5 N -0.537 5.537 6 C 0.202 3.798 7 C -0.023 4.023 8 C -0.067 4.067 9 H 0.057 0.943 10 C -0.104 4.104 11 C -0.110 4.110 12 C 0.054 3.946 13 N -0.553 5.553 14 C 0.079 3.921 15 C 0.031 3.969 16 C -0.545 4.545 17 H 0.060 0.940 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.966 3.034 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.262 1.262 24 C 0.063 3.937 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.207 0.793 29 H 0.178 0.822 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.023 0.977 39 H 0.060 0.940 40 H -0.011 1.011 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.042 0.958 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 19.668 -15.609 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.137 5.137 3 C -0.185 4.185 4 C -0.210 4.210 5 N -0.257 5.257 6 C -0.061 4.061 7 C -0.062 4.062 8 C -0.087 4.087 9 H 0.075 0.925 10 C -0.142 4.142 11 C -0.148 4.148 12 C -0.074 4.074 13 N -0.277 5.277 14 C -0.049 4.049 15 C -0.006 4.006 16 C -0.584 4.584 17 H 0.078 0.922 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.791 3.209 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.186 1.186 24 C -0.065 4.065 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.224 0.776 29 H 0.195 0.805 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.007 0.993 41 H 0.021 0.979 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.739 19.267 -15.200 24.552 hybrid contribution -1.188 -0.631 0.274 1.373 sum -1.927 18.635 -14.927 23.954 Atomic orbital electron populations 1.22478 0.74622 1.06312 1.04911 1.45511 1.08816 1.05961 1.53420 1.23187 0.90729 0.93810 1.10758 1.22676 0.98104 0.90844 1.09380 1.70188 1.20359 1.13550 1.21565 1.23296 0.85688 0.91710 1.05359 1.20013 1.02882 0.86374 0.96945 1.21021 0.99151 0.93617 0.94869 0.92483 1.21711 0.98455 0.98781 0.95216 1.21552 1.01715 0.93650 0.97891 1.22105 0.91531 0.94818 0.98931 1.61924 1.44017 1.04800 1.17002 1.21963 0.98798 0.86455 0.97652 1.19055 0.94740 0.94893 0.91945 1.21637 1.46358 0.94087 0.96284 0.92187 1.25961 0.94961 1.03515 0.95222 1.70103 1.48174 1.37620 1.01237 0.85430 0.78066 0.79176 0.78271 1.19883 1.20650 1.18643 1.22116 1.00552 0.95421 0.88370 0.89476 0.87372 0.88345 0.77637 0.80460 0.89017 0.87942 0.91679 0.90234 0.90124 0.93011 0.95203 0.92696 0.95845 0.92136 0.99290 0.97905 0.92752 0.93987 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 9.62 127.77 1.23 1.70 16 2 N -0.46 -7.52 2.80 -537.61 -1.50 -9.03 16 3 C -0.05 -0.83 11.58 83.09 0.96 0.13 16 4 C -0.06 -1.38 11.87 83.52 0.99 -0.39 16 5 N -0.54 -15.01 11.25 -188.12 -2.12 -17.12 16 6 C 0.20 4.56 6.39 138.13 0.88 5.44 16 7 C -0.02 -0.45 5.00 29.85 0.15 -0.30 16 8 C -0.07 -1.61 2.34 -10.74 -0.03 -1.63 16 9 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 10 C -0.10 -2.21 3.82 30.67 0.12 -2.09 16 11 C -0.11 -3.01 6.09 30.65 0.19 -2.82 16 12 C 0.05 1.90 4.85 86.33 0.42 2.32 16 13 N -0.55 -20.47 4.81 -896.36 -4.31 -24.78 16 14 C 0.08 3.41 5.21 86.30 0.45 3.86 16 15 C 0.03 1.67 4.22 29.85 0.13 1.80 16 16 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 17 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 18 C 0.00 0.08 5.46 84.66 0.46 0.54 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 20 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 24 C 0.06 1.78 4.71 86.33 0.41 2.19 16 25 H 0.09 0.66 6.76 -2.38 -0.02 0.64 16 26 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 27 H 0.10 0.62 7.04 -2.39 -0.02 0.60 16 28 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16 29 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.10 1.43 7.06 -2.39 -0.02 1.42 16 32 H 0.06 1.29 5.75 -2.39 -0.01 1.28 16 33 H 0.08 1.35 8.06 -2.39 -0.02 1.33 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 2.34 5.81 -2.39 -0.01 2.32 16 38 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16 39 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 40 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 41 H 0.00 0.16 6.21 -2.38 -0.01 0.14 16 42 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 Total: -1.00 -73.51 341.61 1.93 -71.58 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.96 Total: 10.22 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 6.59 Total: -20.54 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -7.64 Total: -107.89 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -73.51 1.93 -71.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119993105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.317 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds