Wall clock time and date at job start Mon Mar 30 2020 02:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47265 * 2 1 4 4 C 1.50704 * 109.47426 * 120.00068 * 2 1 3 5 5 C 1.38118 * 120.39714 * 275.28380 * 4 2 1 6 6 C 1.39628 * 118.33120 * 180.23527 * 5 4 2 7 7 N 1.38537 * 120.53359 * 179.75682 * 6 5 4 8 8 C 1.46500 * 119.99910 * 359.72410 * 7 6 5 9 9 H 1.09002 * 109.47092 * 34.99737 * 8 7 6 10 10 C 1.53000 * 109.47023 * 274.99478 * 8 7 6 11 11 C 1.50703 * 109.47155 * 154.99775 * 8 7 6 12 12 H 1.08003 * 119.99742 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99873 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99975 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.47197 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47693 * 210.00055 * 15 13 11 18 18 H 1.48508 * 109.46868 * 330.00146 * 15 13 11 19 19 N 1.32998 * 118.93533 * 359.48529 * 6 5 4 20 20 C 1.31753 * 120.68367 * 0.24929 * 19 6 5 21 21 C 1.50701 * 119.07945 * 179.97438 * 20 19 6 22 22 C 1.53001 * 109.47412 * 300.00265 * 21 20 19 23 23 C 1.53002 * 109.46720 * 60.00411 * 21 20 19 24 24 N 1.31789 * 121.83612 * 0.02713 * 20 19 6 25 25 H 1.09007 * 109.46845 * 299.99963 * 1 2 3 26 26 H 1.08993 * 109.47276 * 59.99895 * 1 2 3 27 27 H 1.08999 * 109.46562 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47457 * 240.00142 * 2 1 3 29 29 H 1.09003 * 109.47575 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46877 * 300.00470 * 3 2 1 31 31 H 1.09006 * 109.47151 * 59.99675 * 3 2 1 32 32 H 1.08001 * 120.83708 * 359.97189 * 5 4 2 33 33 H 0.97004 * 119.99866 * 179.72232 * 7 6 5 34 34 H 1.09004 * 109.46724 * 60.00549 * 10 8 7 35 35 H 1.09001 * 109.47194 * 179.97438 * 10 8 7 36 36 H 1.08992 * 109.47399 * 300.00063 * 10 8 7 37 37 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47057 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.46627 * 59.99950 * 22 21 20 40 40 H 1.09004 * 109.46775 * 180.02562 * 22 21 20 41 41 H 1.08992 * 109.47275 * 299.99802 * 22 21 20 42 42 H 1.08992 * 109.47197 * 299.99217 * 23 21 20 43 43 H 1.08999 * 109.47179 * 59.99777 * 23 21 20 44 44 H 1.09004 * 109.47034 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1620 -0.0308 2.4259 6 6 2.6363 -0.7300 3.5375 7 7 2.7887 -0.0920 4.7578 8 6 2.4571 1.3290 4.8879 9 1 1.6042 1.5628 4.2507 10 6 3.6591 2.1743 4.4617 11 6 2.1112 1.6349 6.3224 12 1 2.1364 0.8493 7.0632 13 6 1.7637 2.9176 6.6893 14 7 1.7345 3.8745 5.7876 15 14 1.3343 3.2966 8.4674 16 1 2.5649 3.6860 9.2017 17 1 0.3563 4.4131 8.5134 18 1 0.7402 2.0919 9.1007 19 7 2.9342 -2.0197 3.4076 20 6 2.7899 -2.6295 2.2486 21 6 3.1389 -4.0917 2.1419 22 6 4.6133 -4.2915 2.4984 23 6 2.2670 -4.8958 3.1084 24 7 2.3500 -1.9963 1.1798 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.9069 1.0161 2.4980 33 1 3.1151 -0.5862 5.5260 34 1 3.9092 1.9531 3.4241 35 1 3.4122 3.2316 4.5581 36 1 4.5119 1.9405 5.0989 37 1 1.4896 4.7769 6.0456 38 1 2.9615 -4.4341 1.1224 39 1 4.7902 -3.9492 3.5180 40 1 4.8657 -5.3491 2.4207 41 1 5.2344 -3.7187 1.8099 42 1 2.4439 -4.5536 4.1280 43 1 1.2166 -4.7535 2.8545 44 1 2.5190 -5.9535 3.0310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134764652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:37 Heat of formation + Delta-G solvation = 16.846948 kcal Electronic energy + Delta-G solvation = -22090.437874 eV Core-core repulsion = 19041.675917 eV Total energy + Delta-G solvation = -3048.761958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56781 -36.60374 -36.32262 -34.36157 -33.02404 -31.51253 -29.59305 -28.35268 -27.01663 -26.97425 -25.41481 -24.49307 -23.13116 -21.56402 -20.12730 -19.32727 -17.83511 -16.55804 -16.08788 -15.03863 -14.73730 -14.65913 -14.49494 -14.16173 -13.91485 -13.78101 -13.40979 -13.03096 -12.81683 -12.54211 -12.12948 -12.03502 -11.91528 -11.71901 -11.40398 -11.18550 -11.16302 -11.09901 -10.96897 -10.88427 -10.80404 -10.73231 -10.49727 -10.32241 -10.13671 -9.84224 -9.18985 -9.01262 -8.61532 -8.56659 -7.21534 -6.26402 -4.34797 1.64505 2.06207 3.18167 3.25349 3.28098 3.87964 4.25569 4.32846 4.40562 4.70911 5.06820 5.09187 5.12996 5.27564 5.35978 5.39595 5.47332 5.61225 5.75265 5.76190 5.82854 5.92241 5.95675 6.00295 6.00645 6.02859 6.04747 6.25165 6.32510 6.37135 6.38198 6.47825 6.52171 6.60027 6.77769 6.86464 6.96745 7.28587 7.50262 7.55803 7.71557 7.94832 8.21583 8.50684 8.71192 8.97691 9.33082 10.79840 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.005249 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.205604 B = 5333.567227 C = 6515.918197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C -0.147 4.147 4 C 0.199 3.801 5 C -0.292 4.292 6 C 0.444 3.556 7 N -0.684 5.684 8 C 0.269 3.731 9 H 0.043 0.957 10 C -0.153 4.153 11 C -0.533 4.533 12 H 0.063 0.937 13 C 0.068 3.932 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.273 1.273 19 N -0.589 5.589 20 C 0.359 3.641 21 C -0.021 4.021 22 C -0.137 4.137 23 C -0.138 4.138 24 N -0.578 5.578 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.144 0.856 33 H 0.397 0.603 34 H 0.013 0.987 35 H 0.094 0.906 36 H 0.031 0.969 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -9.092 -9.202 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.205 4.205 4 C 0.058 3.942 5 C -0.320 4.320 6 C 0.198 3.802 7 N -0.310 5.310 8 C 0.167 3.833 9 H 0.061 0.939 10 C -0.212 4.212 11 C -0.571 4.571 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.198 1.198 19 N -0.316 5.316 20 C 0.089 3.911 21 C -0.042 4.042 22 C -0.196 4.196 23 C -0.196 4.196 24 N -0.299 5.299 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.232 0.768 34 H 0.032 0.968 35 H 0.112 0.888 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.080 -9.512 -9.229 13.298 hybrid contribution -0.282 1.119 1.413 1.825 sum 0.798 -8.393 -7.816 11.496 Atomic orbital electron populations 1.21774 0.93703 1.02051 1.02175 1.19989 0.96109 0.95416 0.94621 1.21907 1.01291 0.94803 1.02476 1.21112 0.89957 0.89297 0.93835 1.22042 1.12860 1.03500 0.93625 1.18759 0.86317 0.87605 0.87560 1.45490 1.66272 1.12389 1.06823 1.18882 0.93673 0.73214 0.97542 0.93889 1.22195 0.98267 1.04412 0.96285 1.21156 1.47810 0.95115 0.93042 0.91877 1.24852 0.94751 0.95802 0.98096 1.69859 1.47275 1.01759 1.33375 0.86402 0.78355 0.78144 0.83999 1.20431 1.20961 1.19782 1.67668 1.26892 1.09184 1.27813 1.22510 0.89204 0.96021 0.83415 1.19830 0.96272 0.87179 1.00900 1.21751 0.94110 1.01083 1.02616 1.21753 0.98998 0.98802 1.00028 1.67952 1.20342 1.09594 1.32050 0.92203 0.92070 0.92531 0.89585 0.92525 0.92138 0.91531 0.83855 0.76812 0.96785 0.88768 0.94957 0.92423 0.89272 0.91484 0.92291 0.93048 0.91470 0.93028 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.18 37.16 0.34 -1.43 16 2 C -0.04 -0.59 3.26 -91.77 -0.30 -0.89 16 3 C -0.15 -1.93 8.64 37.16 0.32 -1.61 16 4 C 0.20 3.50 5.81 -82.33 -0.48 3.02 16 5 C -0.29 -5.68 8.03 -39.11 -0.31 -5.99 16 6 C 0.44 9.15 7.69 -154.77 -1.19 7.96 16 7 N -0.68 -14.64 5.22 -54.90 -0.29 -14.93 16 8 C 0.27 6.38 2.26 -69.08 -0.16 6.22 16 9 H 0.04 1.10 6.50 -51.93 -0.34 0.77 16 10 C -0.15 -3.52 9.24 37.16 0.34 -3.18 16 11 C -0.53 -13.69 8.73 -34.44 -0.30 -13.99 16 12 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 13 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 14 N -0.89 -23.48 11.32 55.43 0.63 -22.85 16 15 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 19 N -0.59 -11.42 9.84 -9.96 -0.10 -11.52 16 20 C 0.36 6.37 6.34 -157.23 -1.00 5.37 16 21 C -0.02 -0.30 3.25 -91.77 -0.30 -0.59 16 22 C -0.14 -1.71 9.09 37.16 0.34 -1.37 16 23 C -0.14 -1.72 9.09 37.16 0.34 -1.39 16 24 N -0.58 -10.45 10.24 -7.07 -0.07 -10.52 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.96 6.58 -51.93 -0.34 0.61 16 32 H 0.14 2.85 4.72 -52.49 -0.25 2.60 16 33 H 0.40 8.22 8.66 -40.82 -0.35 7.86 16 34 H 0.01 0.29 7.81 -51.93 -0.41 -0.12 16 35 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 39 H 0.07 0.91 8.01 -51.93 -0.42 0.50 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.92 8.01 -51.93 -0.42 0.51 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -27.09 353.46 -9.42 -36.50 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.44 Total: 9.02 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.45 Total: -6.20 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.17 Total: -59.81 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.09 -9.42 -36.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134764652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.352 kcal (2) G-P(sol) polarization free energy of solvation -27.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds