Wall clock time and date at job start Mon Mar 30 2020 02:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47265 * 2 1 4 4 C 1.50704 * 109.47426 * 120.00068 * 2 1 3 5 5 C 1.38118 * 120.39714 * 275.28380 * 4 2 1 6 6 C 1.39628 * 118.33120 * 180.23527 * 5 4 2 7 7 N 1.38537 * 120.53359 * 179.75682 * 6 5 4 8 8 C 1.46500 * 119.99910 * 359.72410 * 7 6 5 9 9 H 1.09002 * 109.47092 * 34.99737 * 8 7 6 10 10 C 1.53000 * 109.47023 * 274.99478 * 8 7 6 11 11 C 1.50703 * 109.47155 * 154.99775 * 8 7 6 12 12 H 1.08003 * 119.99742 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99873 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99975 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.47197 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47693 * 210.00055 * 15 13 11 18 18 H 1.48508 * 109.46868 * 330.00146 * 15 13 11 19 19 N 1.32998 * 118.93533 * 359.48529 * 6 5 4 20 20 C 1.31753 * 120.68367 * 0.24929 * 19 6 5 21 21 C 1.50701 * 119.07945 * 179.97438 * 20 19 6 22 22 C 1.53001 * 109.47412 * 300.00265 * 21 20 19 23 23 C 1.53002 * 109.46720 * 60.00411 * 21 20 19 24 24 N 1.31789 * 121.83612 * 0.02713 * 20 19 6 25 25 H 1.09007 * 109.46845 * 299.99963 * 1 2 3 26 26 H 1.08993 * 109.47276 * 59.99895 * 1 2 3 27 27 H 1.08999 * 109.46562 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47457 * 240.00142 * 2 1 3 29 29 H 1.09003 * 109.47575 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46877 * 300.00470 * 3 2 1 31 31 H 1.09006 * 109.47151 * 59.99675 * 3 2 1 32 32 H 1.08001 * 120.83708 * 359.97189 * 5 4 2 33 33 H 0.97004 * 119.99866 * 179.72232 * 7 6 5 34 34 H 1.09004 * 109.46724 * 60.00549 * 10 8 7 35 35 H 1.09001 * 109.47194 * 179.97438 * 10 8 7 36 36 H 1.08992 * 109.47399 * 300.00063 * 10 8 7 37 37 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47057 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.46627 * 59.99950 * 22 21 20 40 40 H 1.09004 * 109.46775 * 180.02562 * 22 21 20 41 41 H 1.08992 * 109.47275 * 299.99802 * 22 21 20 42 42 H 1.08992 * 109.47197 * 299.99217 * 23 21 20 43 43 H 1.08999 * 109.47179 * 59.99777 * 23 21 20 44 44 H 1.09004 * 109.47034 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1620 -0.0308 2.4259 6 6 2.6363 -0.7300 3.5375 7 7 2.7887 -0.0920 4.7578 8 6 2.4571 1.3290 4.8879 9 1 1.6042 1.5628 4.2507 10 6 3.6591 2.1743 4.4617 11 6 2.1112 1.6349 6.3224 12 1 2.1364 0.8493 7.0632 13 6 1.7637 2.9176 6.6893 14 7 1.7345 3.8745 5.7876 15 14 1.3343 3.2966 8.4674 16 1 2.5649 3.6860 9.2017 17 1 0.3563 4.4131 8.5134 18 1 0.7402 2.0919 9.1007 19 7 2.9342 -2.0197 3.4076 20 6 2.7899 -2.6295 2.2486 21 6 3.1389 -4.0917 2.1419 22 6 4.6133 -4.2915 2.4984 23 6 2.2670 -4.8958 3.1084 24 7 2.3500 -1.9963 1.1798 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.9069 1.0161 2.4980 33 1 3.1151 -0.5862 5.5260 34 1 3.9092 1.9531 3.4241 35 1 3.4122 3.2316 4.5581 36 1 4.5119 1.9405 5.0989 37 1 1.4896 4.7769 6.0456 38 1 2.9615 -4.4341 1.1224 39 1 4.7902 -3.9492 3.5180 40 1 4.8657 -5.3491 2.4207 41 1 5.2344 -3.7187 1.8099 42 1 2.4439 -4.5536 4.1280 43 1 1.2166 -4.7535 2.8545 44 1 2.5190 -5.9535 3.0310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134764652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:36 Heat of formation + Delta-G solvation = 3.422536 kcal Electronic energy + Delta-G solvation = -22091.020001 eV Core-core repulsion = 19041.675917 eV Total energy + Delta-G solvation = -3049.344084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.02212 -38.26124 -37.52926 -35.75774 -34.64578 -33.13097 -31.09763 -30.05881 -28.05036 -28.00611 -27.37893 -25.85776 -24.59098 -23.02566 -21.71388 -20.60185 -19.42793 -18.16906 -17.73950 -16.85854 -16.21114 -16.07925 -15.86089 -15.49591 -15.21912 -14.94230 -14.86666 -14.38731 -14.23444 -14.09165 -13.64007 -13.19827 -13.07720 -12.99520 -12.90803 -12.78459 -12.75705 -12.44081 -12.29568 -12.20542 -12.18682 -12.09924 -11.93216 -11.79976 -11.66039 -11.30571 -11.10504 -10.62765 -10.43144 -10.05569 -8.86871 -8.23711 -6.39079 0.19801 0.53338 1.41490 1.42887 1.52409 2.22556 2.46130 2.95797 3.03148 3.07567 3.38918 3.85258 4.02609 4.13036 4.16906 4.22620 4.28525 4.38161 4.50733 4.61211 4.72790 4.74728 4.80308 4.84690 4.88137 4.93109 4.96297 4.97213 4.98196 4.98760 5.10475 5.14728 5.29174 5.32698 5.36610 5.38283 5.44395 5.52537 5.64053 5.78620 5.89705 6.06272 6.52487 6.67091 6.92289 7.30972 7.47511 8.81938 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.005249 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.205604 B = 5333.567227 C = 6515.918197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.041 4.041 3 C -0.143 4.143 4 C 0.203 3.797 5 C -0.310 4.310 6 C 0.427 3.573 7 N -0.690 5.690 8 C 0.281 3.719 9 H 0.019 0.981 10 C -0.138 4.138 11 C -0.552 4.552 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.908 5.908 15 Si 0.966 3.034 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.272 1.272 19 N -0.597 5.597 20 C 0.350 3.650 21 C -0.022 4.022 22 C -0.131 4.131 23 C -0.132 4.132 24 N -0.581 5.581 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.133 0.867 33 H 0.398 0.602 34 H 0.022 0.978 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.268 0.732 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -10.306 -10.126 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 C -0.200 4.200 4 C 0.061 3.939 5 C -0.338 4.338 6 C 0.182 3.818 7 N -0.317 5.317 8 C 0.178 3.822 9 H 0.037 0.963 10 C -0.197 4.197 11 C -0.590 4.590 12 H 0.079 0.921 13 C -0.175 4.175 14 N -0.546 5.546 15 Si 0.791 3.209 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.196 1.196 19 N -0.323 5.323 20 C 0.080 3.920 21 C -0.043 4.043 22 C -0.189 4.189 23 C -0.190 4.190 24 N -0.302 5.302 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.151 0.849 33 H 0.233 0.767 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.031 -10.756 -10.169 14.838 hybrid contribution -0.270 1.423 1.598 2.156 sum 0.761 -9.333 -8.571 12.695 Atomic orbital electron populations 1.21750 0.92488 1.02064 1.02883 1.20139 0.96983 0.95575 0.93295 1.21878 1.00890 0.94297 1.02974 1.21720 0.88396 0.89282 0.94490 1.22059 1.14154 1.03256 0.94329 1.18962 0.86946 0.88405 0.87460 1.45212 1.67423 1.11593 1.07437 1.18543 0.92915 0.74566 0.96220 0.96340 1.21997 0.97878 1.03029 0.96760 1.21432 1.48261 0.95409 0.93907 0.92132 1.25595 0.94550 0.95621 1.01780 1.69962 1.47599 1.02035 1.34988 0.85440 0.78176 0.77824 0.79490 1.19850 1.20574 1.19647 1.67729 1.27206 1.08575 1.28771 1.23435 0.88030 0.97723 0.82784 1.20057 0.97399 0.84643 1.02174 1.21716 0.92860 1.03057 1.01293 1.21719 0.98258 1.00485 0.98506 1.68116 1.20348 1.09636 1.32063 0.93797 0.89061 0.92844 0.88075 0.93131 0.89191 0.93426 0.84891 0.76688 0.95863 0.90626 0.95133 0.92249 0.87777 0.93127 0.89027 0.93694 0.93164 0.93796 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.18 71.98 0.66 -2.55 16 2 C -0.04 -1.09 3.26 -11.54 -0.04 -1.13 16 3 C -0.14 -3.61 8.64 71.98 0.62 -2.98 16 4 C 0.20 7.09 5.81 42.42 0.25 7.33 16 5 C -0.31 -12.37 8.03 22.58 0.18 -12.19 16 6 C 0.43 18.07 7.69 133.16 1.02 19.09 16 7 N -0.69 -30.50 5.22 -327.62 -1.71 -32.21 16 8 C 0.28 13.77 2.26 44.25 0.10 13.87 16 9 H 0.02 1.01 6.50 -2.39 -0.02 0.99 16 10 C -0.14 -6.52 9.24 71.98 0.67 -5.86 16 11 C -0.55 -28.92 8.73 25.60 0.22 -28.70 16 12 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 13 C 0.03 1.34 5.30 84.65 0.45 1.79 16 14 N -0.91 -48.88 11.32 21.44 0.24 -48.63 16 15 Si 0.97 41.47 29.54 68.60 2.03 43.49 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 N -0.60 -23.32 9.84 -185.43 -1.82 -25.14 16 20 C 0.35 12.19 6.34 138.76 0.88 13.07 16 21 C -0.02 -0.58 3.25 -11.54 -0.04 -0.62 16 22 C -0.13 -3.00 9.09 71.98 0.65 -2.34 16 23 C -0.13 -3.05 9.09 71.98 0.65 -2.39 16 24 N -0.58 -20.47 10.24 -176.27 -1.80 -22.28 16 25 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.38 6.58 -2.38 -0.02 1.37 16 32 H 0.13 5.56 4.72 -2.91 -0.01 5.54 16 33 H 0.40 17.02 8.66 -92.71 -0.80 16.22 16 34 H 0.02 1.01 7.81 -2.39 -0.02 0.99 16 35 H 0.08 3.87 6.07 -2.39 -0.01 3.86 16 36 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 38 H 0.10 2.40 8.09 -2.39 -0.02 2.38 16 39 H 0.05 1.32 8.01 -2.39 -0.02 1.30 16 40 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 1.33 8.01 -2.39 -0.02 1.31 16 43 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -58.47 353.46 3.39 -55.08 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.18 Total: 33.31 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.29 Total: -3.62 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -5.10 Total: -128.26 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -58.47 3.39 -55.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134764652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.499 kcal (2) G-P(sol) polarization free energy of solvation -58.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds